genome.fa.s13.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  134  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43416284--43416347	6	10.7	6	86	0	65	32	10	15	40	1.82
43416287--43416347	24	2.5	24	91	0	95	34	11	16	37	1.85
43416284--43416345	18	3.4	18	81	0	79	32	11	16	40	1.83
43418468--43418526	19	3.1	19	73	4	64	42	18	27	11	1.85
43419502--43419531	14	2.1	14	93	0	51	26	0	3	70	1.03
43421717--43421838	40	3.0	40	84	7	158	22	22	30	24	1.99
43437474--43437590	40	2.9	40	88	2	173	24	21	25	28	1.99
43437480--43437604	40	3.1	40	87	2	171	22	21	28	28	1.99
43438997--43439031	18	1.9	18	88	0	52	54	8	2	34	1.46
43442624--43442651	14	2.0	14	100	0	56	35	14	0	50	1.43
43444156--43444314	27	5.8	27	89	2	219	29	23	8	38	1.83
43444111--43444460	27	12.9	27	79	6	161	36	21	8	34	1.84
43444132--43444343	54	3.9	54	81	2	226	32	22	8	36	1.83
43444307--43444545	54	4.4	53	72	11	187	40	19	9	30	1.84
43444293--43444545	27	9.3	27	75	10	149	39	20	9	30	1.84
43444275--43444516	108	2.2	108	78	5	247	39	20	8	31	1.83
43445445--43445514	25	2.8	25	88	0	104	27	22	22	27	1.99
43445734--43445816	31	2.7	30	89	7	132	28	14	26	30	1.95
43449516--43449552	17	2.2	17	95	0	65	16	2	2	78	0.98
43451694--43451738	22	2.0	22	95	0	81	33	13	24	28	1.93
43452075--43452134	27	2.3	26	82	2	66	35	20	21	23	1.96
43452175--43452226	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43452797--43452850	27	2.0	27	85	3	74	35	20	22	22	1.96
43452851--43452965	27	4.3	26	75	12	99	25	19	19	36	1.94
43452851--43452969	54	2.2	54	87	3	177	25	20	18	36	1.95
43452870--43452969	27	3.7	27	84	5	139	24	20	19	37	1.94
43453127--43453367	27	8.9	27	90	1	367	25	20	19	34	1.96
43453131--43453394	54	4.9	54	90	0	395	25	18	20	35	1.95
43453131--43453421	27	10.8	27	88	1	325	26	17	20	36	1.94
43453351--43453476	27	4.7	27	89	4	148	25	6	25	42	1.78
43453322--43453476	54	2.9	53	82	5	159	25	9	24	41	1.84
43457334--43457370	13	2.8	13	87	0	56	40	0	24	35	1.55
43459691--43459717	3	9.0	3	100	0	54	33	0	0	66	0.92
43460321--43460371	20	2.7	19	82	14	54	41	0	21	37	1.54
43465350--43465472	62	2.0	62	98	0	237	24	17	26	30	1.97
43465623--43465725	54	1.9	54	82	4	127	27	20	20	32	1.97
43465634--43465725	27	3.4	27	83	0	121	25	21	18	34	1.96
43471691--43471833	40	3.6	40	88	7	202	24	27	24	23	2.00
43482271--43482321	25	2.0	25	85	7	68	31	19	17	31	1.95
43482365--43482399	10	3.4	10	92	7	61	34	17	17	31	1.93
43482360--43482399	21	1.9	21	94	0	71	37	17	15	30	1.90
43482359--43482411	21	2.5	20	84	3	70	37	16	13	32	1.88
43485400--43485575	56	3.1	56	99	0	343	45	9	22	22	1.80
43485400--43485615	112	1.9	111	81	8	260	49	8	21	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43486713--43487211	47	10.6	47	93	1	815	30	11	31	25	1.92
43489520--43489822	40	7.6	40	85	3	337	24	22	27	25	2.00
43490121--43490226	43	2.5	43	95	3	187	25	14	32	28	1.94
43496555--43497092	47	11.3	47	91	2	717	33	9	29	27	1.89
43497911--43498077	84	2.0	84	96	0	307	23	19	19	37	1.95
43502689--43502840	40	3.8	40	91	1	225	22	28	25	23	1.99
43505259--43505429	93	1.8	93	94	2	308	28	28	21	21	1.98
43505251--43505426	46	3.8	46	80	14	218	29	28	20	21	1.98
43515746--43515796	25	2.0	25	85	7	68	29	21	19	29	1.98
43515840--43515874	10	3.4	10	92	7	61	34	17	17	31	1.93
43515835--43515874	21	1.9	21	94	0	71	37	17	15	30	1.90
43515834--43515886	21	2.5	20	84	3	70	37	16	13	32	1.88
43523692--43523725	10	3.4	10	84	15	52	35	17	17	29	1.93
43523687--43523724	20	1.9	20	94	0	67	39	18	15	26	1.91
43523686--43523737	20	2.6	20	81	6	61	38	17	13	30	1.88
43527345--43527395	25	2.0	25	85	7	68	29	21	19	29	1.98
43527439--43527473	10	3.4	10	88	7	52	34	17	14	34	1.90
43527434--43527473	21	1.9	21	89	0	62	37	17	12	32	1.87
43532778--43532884	27	3.9	27	82	9	119	38	23	21	16	1.93
43532775--43532884	54	2.0	54	84	3	141	39	22	21	16	1.92
43533300--43533333	16	2.2	15	94	5	59	2	17	26	52	1.58
43538803--43538876	24	3.1	25	82	5	91	41	21	20	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43553276--43553341	20	3.3	20	86	0	78	10	24	21	43	1.83
43553294--43553356	20	3.2	20	83	0	63	6	23	25	44	1.77
43561661--43561703	21	2.0	23	86	9	63	48	27	4	18	1.68
43574262--43574311	18	2.8	18	87	6	66	50	8	0	42	1.32
43574799--43574885	46	1.9	46	86	9	126	42	10	2	44	1.51
43575171--43575196	13	2.0	13	100	0	52	38	0	15	46	1.46
43576280--43576407	42	3.0	42	78	8	143	32	11	21	33	1.90
43580291--43580322	15	2.1	15	100	0	64	25	6	0	68	1.12
43582147--43582268	38	3.2	38	95	0	208	31	15	25	27	1.96
43590550--43590665	58	2.0	58	98	0	223	21	20	16	41	1.90
43599051--43599088	19	2.0	20	85	15	53	36	0	23	39	1.55
43605471--43605535	33	1.9	34	84	6	87	43	1	13	41	1.54
43607892--43608008	62	1.9	59	83	8	146	40	4	3	52	1.38
43610877--43611054	27	6.6	27	83	3	205	26	15	28	29	1.96
43610878--43611033	82	1.9	81	88	3	233	26	15	28	29	1.96
43610874--43611054	82	2.2	81	83	2	229	27	15	27	29	1.96
43618940--43619117	27	6.6	27	83	3	205	26	15	28	29	1.96
43618941--43619096	82	1.9	81	88	3	233	26	15	28	29	1.96
43618937--43619117	82	2.2	81	83	2	229	27	15	27	29	1.96
43623626--43623780	43	3.6	43	92	3	267	30	32	25	11	1.91
43623773--43624068	38	7.8	38	84	3	375	30	23	22	22	1.99
43623773--43624055	75	3.8	76	86	2	401	31	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43623778--43624068	113	2.6	113	87	2	406	30	23	22	23	1.99
43626812--43626844	17	1.9	17	93	0	57	75	3	9	12	1.14
43634610--43634653	22	2.0	22	95	0	79	50	13	11	25	1.75
43635730--43635855	27	4.9	27	73	13	106	40	15	16	27	1.88
43635787--43635828	20	2.1	20	90	0	66	40	4	19	35	1.72
43635761--43635855	47	2.0	47	87	4	138	40	13	16	29	1.87
43637278--43637302	12	2.1	12	100	0	50	24	52	0	24	1.48
43647585--43647757	46	3.7	46	80	13	219	21	21	28	28	1.98
43647582--43647752	93	1.8	93	96	0	315	21	21	29	28	1.98
43650230--43650295	28	2.4	28	92	2	107	25	21	18	34	1.96
43655686--43655793	56	1.9	56	87	7	157	33	24	15	26	1.95
43657927--43657987	27	2.3	27	85	5	79	27	16	22	32	1.96
43662148--43662307	46	3.5	46	71	17	141	30	28	18	21	1.97
43677507--43677552	23	2.1	21	84	8	56	50	21	4	23	1.67
43678268--43678403	43	3.2	42	74	9	105	31	23	19	25	1.98
43685030--43685179	67	2.2	67	81	8	171	32	17	28	21	1.96
43685054--43685237	67	2.8	64	77	8	194	29	17	29	22	1.97
43688707--43688752	23	2.1	21	84	8	56	50	21	4	23	1.67
43690421--43690460	19	2.1	19	95	0	71	30	5	17	47	1.69
43690509--43690597	40	2.2	41	84	9	112	30	15	24	29	1.96
43690528--43690626	40	2.4	40	85	10	119	26	14	30	29	1.95
43697993--43698070	39	2.0	39	100	0	156	41	17	17	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43723160--43723275	40	2.9	40	85	5	171	22	28	23	25	1.99
43731296--43731403	27	4.0	27	82	5	121	37	22	24	15	1.93
43732812--43732912	24	4.2	24	84	2	123	23	38	3	33	1.74
43735544--43735580	5	7.8	5	82	11	51	45	0	0	54	1.00
43735549--43735584	18	2.1	17	89	5	54	50	0	0	50	1.00
43743305--43743347	17	2.4	18	80	7	61	53	0	4	41	1.21
43743335--43743371	18	2.1	17	90	5	56	51	0	0	48	1.00
43751660--43751803	40	3.6	39	83	5	153	25	17	25	32	1.97
43775782--43775814	15	2.2	15	94	0	57	57	12	12	18	1.64
43778792--43779676	100	8.9	100	99	0	1718	28	25	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310