genome.fa.s13.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  148  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48349130--48349167	18	2.1	19	85	5	51	42	13	0	44	1.43
48358304--48358352	23	2.1	23	81	7	55	32	2	6	59	1.34
48362872--48362936	28	2.5	25	75	22	62	49	0	1	49	1.10
48365948--48365991	23	2.0	21	86	8	61	63	6	2	27	1.31
48365979--48366012	16	2.1	16	94	0	59	50	8	2	38	1.49
48370964--48371005	19	2.2	19	91	0	66	23	33	28	14	1.94
48371161--48371202	19	2.2	19	91	0	66	23	33	28	14	1.94
48370878--48371271	197	2.0	197	98	0	761	33	24	18	23	1.97
48372442--48372482	19	2.2	19	90	0	64	24	34	29	12	1.91
48372638--48372679	19	2.2	19	91	0	66	23	33	28	14	1.94
48376464--48376615	43	3.5	44	83	5	161	28	14	23	33	1.94
48378903--48379022	58	2.1	58	100	0	240	27	21	24	26	1.99
48378984--48379164	48	3.9	48	75	10	169	28	24	20	25	1.99
48385706--48385886	40	4.6	40	88	2	260	21	28	24	25	1.99
48388442--48388511	27	2.6	27	95	2	113	31	28	12	27	1.93
48388442--48388539	28	3.5	28	90	2	135	31	28	13	26	1.94
48396561--48396686	28	4.5	28	90	2	182	33	27	11	26	1.92
48396560--48396686	55	2.3	57	87	2	186	33	28	11	26	1.92
48407972--48408152	40	4.6	40	91	2	278	22	27	23	26	1.99
48424445--48424622	52	3.5	51	87	6	247	28	15	28	28	1.96
48431441--48432552	47	23.6	47	97	0	2019	32	8	28	31	1.87
48438925--48438999	26	2.9	26	85	0	105	37	24	21	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48438980--48439041	25	2.4	27	83	5	74	35	22	24	17	1.95
48439152--48439203	27	1.9	27	84	7	70	30	19	21	28	1.97
48450885--48451066	49	3.7	49	81	2	220	28	26	19	25	1.99
48450878--48451064	100	1.9	100	93	0	320	28	25	20	25	1.99
48451312--48451365	27	2.0	27	85	0	72	38	14	7	38	1.75
48453814--48453878	29	2.3	29	86	2	87	44	3	24	27	1.68
48457158--48457320	42	3.7	43	80	7	177	33	27	17	21	1.96
48462832--48462871	18	2.2	18	86	0	53	57	15	5	22	1.57
48462832--48462858	12	2.2	12	100	0	54	59	14	0	25	1.36
48465845--48465893	24	2.0	24	92	0	80	30	20	16	32	1.94
48467233--48467284	21	2.5	20	82	11	61	32	1	21	44	1.63
48473500--48473607	43	2.5	41	84	10	128	29	21	15	33	1.94
48478486--48478533	20	2.4	20	100	0	96	47	12	31	8	1.71
48488338--48488373	18	2.0	18	100	0	72	38	16	5	38	1.72
48508185--48508243	26	2.3	27	82	8	77	25	13	20	40	1.89
48508922--48508967	24	1.9	24	100	0	92	19	41	26	13	1.88
48515511--48515556	22	2.1	22	100	0	92	28	13	8	50	1.70
48521282--48521514	117	2.0	117	94	1	414	21	22	28	27	1.99
48524295--48524472	27	6.6	27	83	3	205	26	15	28	29	1.96
48524296--48524451	82	1.9	81	88	3	233	26	15	28	29	1.96
48524292--48524472	82	2.2	81	83	2	229	27	15	27	29	1.96
48526949--48527011	30	2.1	30	96	0	117	25	15	31	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48531468--48531621	40	3.8	40	92	0	245	24	22	30	23	1.99
48533631--48533957	47	6.8	47	76	10	268	22	31	18	26	1.97
48533631--48533996	47	7.7	49	75	12	255	23	30	18	27	1.98
48533631--48534000	94	3.9	95	77	12	339	23	30	18	27	1.98
48533681--48533997	142	2.2	146	81	8	366	23	30	18	27	1.98
48534668--48534692	13	1.9	13	100	0	50	64	16	4	16	1.44
48540169--48540212	22	2.0	22	91	4	72	27	27	36	9	1.87
48540173--48540230	22	2.6	22	86	0	71	31	29	27	12	1.92
48541325--48541652	47	6.9	49	71	14	186	23	30	17	27	1.97
48542317--48542341	13	1.9	13	100	0	50	56	16	12	16	1.68
48543609--48543666	20	2.9	20	84	0	80	43	18	27	10	1.83
48543981--48544018	14	2.7	14	91	0	58	52	39	0	7	1.31
48544644--48544671	5	5.6	5	100	0	56	82	0	0	17	0.68
48549367--48549391	13	1.9	13	100	0	50	24	4	0	72	1.02
48553216--48553257	19	2.2	20	83	12	52	50	19	0	30	1.48
48554342--48554389	16	2.8	17	84	6	53	68	8	6	16	1.35
48559256--48559462	40	5.2	40	91	4	305	24	22	27	25	2.00
48566213--48566237	13	1.9	13	100	0	50	24	24	24	28	2.00
48568509--48568544	18	1.9	19	88	5	56	33	19	2	44	1.65
48570391--48570561	46	3.7	47	80	9	176	25	30	16	26	1.97
48570391--48570561	94	1.8	92	86	5	245	25	30	16	26	1.97
48571827--48571969	40	3.6	40	78	3	153	30	13	25	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48592542--48592641	50	2.0	50	88	0	146	24	25	19	32	1.98
48592725--48592857	69	1.9	69	86	3	187	15	25	9	48	1.76
48597492--48597550	25	2.4	25	88	0	82	25	25	0	49	1.51
48598023--48598176	46	3.4	45	75	6	130	27	16	21	35	1.94
48599890--48599937	25	1.9	25	86	0	69	33	25	16	25	1.96
48599974--48600016	20	2.2	20	100	0	86	37	11	18	32	1.87
48599981--48600024	20	2.2	20	91	0	70	34	11	22	31	1.90
48600069--48600198	24	5.4	24	86	7	183	32	18	20	29	1.96
48600405--48600468	31	2.1	31	87	0	92	35	14	23	26	1.93
48602524--48602647	46	2.7	46	84	2	142	23	20	25	30	1.99
48610192--48610340	27	5.4	27	92	3	226	27	12	28	30	1.93
48610192--48610340	55	2.7	55	92	0	235	27	12	28	30	1.93
48613391--48614297	46	19.7	46	95	2	1628	21	18	28	31	1.97
48615560--48615642	41	2.0	41	95	0	148	15	7	18	59	1.59
48623839--48623979	71	2.0	71	94	0	246	41	4	15	38	1.69
48636201--48636354	80	1.9	78	93	2	263	26	16	27	29	1.97
48639734--48639794	30	2.0	30	83	0	77	37	6	24	31	1.81
48643089--48643199	56	2.0	56	98	0	213	42	5	12	39	1.66
48645748--48645872	29	4.4	28	81	5	144	32	26	14	26	1.94
48646067--48646116	16	3.1	15	80	5	55	8	20	28	44	1.79
48646075--48646121	8	5.9	8	87	0	58	10	14	27	46	1.78
48646074--48646121	24	2.0	24	87	0	69	10	16	27	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48647338--48647369	16	2.0	16	93	0	55	9	6	34	50	1.60
48658942--48658972	16	1.9	16	93	0	53	58	3	9	29	1.46
48668723--48668764	21	2.0	21	100	0	84	42	14	4	38	1.66
48672245--48672301	30	1.9	30	85	7	80	40	7	24	28	1.81
48672538--48672576	20	1.9	20	84	5	51	35	2	10	51	1.50
48672797--48672914	47	2.5	47	97	0	218	25	16	27	29	1.97
48676560--48676585	13	2.0	13	100	0	52	15	38	30	15	1.88
48681622--48681717	49	2.0	49	91	0	156	28	23	23	23	2.00
48682444--48682486	16	2.7	16	89	7	61	6	18	13	60	1.55
48699265--48699485	85	2.6	85	98	0	424	38	9	26	26	1.86
48701770--48701947	47	3.7	47	87	3	257	33	7	29	28	1.85
48701770--48701947	96	1.9	94	88	2	266	33	7	29	28	1.85
48717253--48717740	162	3.0	162	100	0	976	27	22	18	31	1.97
48722687--48722718	16	2.0	16	100	0	64	25	6	31	37	1.81
48724600--48724722	46	2.7	46	94	0	210	21	20	28	30	1.98
48725666--48725890	40	5.6	40	83	2	263	25	24	26	23	2.00
48725666--48725926	80	3.3	80	81	3	285	26	24	26	23	2.00
48725666--48725890	120	1.9	121	83	4	294	25	24	26	23	2.00
48734556--48734727	46	3.7	46	77	13	190	28	27	21	22	1.99
48734561--48734731	93	1.8	93	92	0	288	28	28	21	21	1.99
48735151--48735210	30	2.0	30	90	0	93	30	25	8	36	1.85
48747199--48747375	27	6.6	27	83	5	205	27	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48747200--48747354	81	1.9	81	88	5	233	27	15	28	29	1.96
48747196--48747375	81	2.2	81	83	3	229	27	15	27	29	1.96
48748432--48748525	47	2.0	46	95	2	170	27	20	28	23	1.99
48749305--48749401	49	2.0	49	91	0	158	26	19	20	32	1.97
48750157--48750264	54	2.0	54	92	0	180	21	32	25	20	1.97
48750559--48750677	61	2.0	61	96	0	220	24	15	28	31	1.96
48752091--48752356	40	6.7	40	83	6	270	26	27	21	25	1.99
48752091--48752303	81	2.7	79	84	2	257	26	27	21	24	1.99
48752093--48752349	121	2.1	120	80	5	270	26	26	20	26	1.99
48752091--48752356	81	3.3	81	80	7	215	26	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310