Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  278  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91457439--91458177
250
2.9
248
88
4
1065
35
20
17
27
1.94
91457502--91458177
161
4.0
161
74
19
566
35
20
17
27
1.95
91457812--91457846
14
2.5
14
95
0
61
60
8
14
17
1.58
91457912--91458248
91
3.7
91
99
0
656
35
20
13
30
1.91
91473209--91473256
24
1.9
26
84
16
66
58
6
0
35
1.23
91492622--91492697
37
2.1
37
94
0
134
35
17
14
32
1.90
91493714--91493746
2
16.5
2
93
0
57
54
0
0
45
0.99
91496664--91496738
29
2.6
29
93
0
123
36
8
2
53
1.45
91501490--91501516
14
1.9
14
100
0
54
0
3
14
81
0.82
91501922--91501955
15
2.3
15
89
0
50
70
0
0
29
0.87
91510556--91510612
18
3.2
18
94
0
105
31
15
24
28
1.96
91518216--91518254
16
2.4
16
91
0
60
43
5
20
30
1.73
91518404--91518430
7
3.9
7
100
0
54
70
0
0
29
0.88
91518444--91518481
14
2.5
15
83
12
51
60
0
0
39
0.97
91518499--91518549
15
3.3
16
81
8
61
43
0
0
56
0.99
91519133--91519190
23
2.8
20
72
23
55
29
8
8
53
1.61
91519991--91520041
21
2.4
21
90
0
75
17
5
11
64
1.45
91523855--91523904
24
2.1
24
100
0
100
34
16
16
34
1.90
91527475--91527521
21
2.2
22
92
3
78
21
19
38
21
1.94
91530627--91530671
23
2.0
23
82
8
56
40
13
8
37
1.76
91535584--91535629
16
2.9
16
90
0
74
41
6
30
21
1.78
91535609--91535699
44
2.0
46
91
4
150
26
3
30
39
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91535609--91535715
46
2.5
44
85
11
143
28
2
30
37
1.72
91535858--91536013
17
10.5
15
65
30
61
54
2
1
41
1.22
91535863--91535896
17
2.0
17
100
0
68
58
0
0
41
0.98
91535980--91536013
17
2.0
17
100
0
68
58
0
0
41
0.98
91535843--91536332
117
4.3
117
93
3
795
51
3
1
42
1.30
91536092--91536130
17
2.5
15
84
15
60
61
0
0
38
0.96
91536097--91536130
17
2.0
17
100
0
68
58
0
0
41
0.98
91536163--91536202
20
2.0
21
85
5
55
60
5
0
35
1.19
91536170--91536249
28
2.8
28
81
11
92
56
1
0
42
1.07
91535947--91536282
43
8.3
41
65
24
137
51
4
1
42
1.31
91536292--91536355
32
2.0
32
81
0
74
48
3
0
48
1.17
91541175--91541217
22
2.0
22
95
0
77
27
11
13
46
1.78
91542729--91542821
47
2.0
47
93
0
159
46
6
6
40
1.55
91548825--91548957
66
2.0
66
98
0
257
24
19
21
33
1.97
91551515--91551665
53
2.8
53
89
4
214
29
27
16
25
1.97
91561576--91561726
53
2.8
53
89
4
214
29
27
16
25
1.97
91564004--91564037
16
2.1
17
88
5
52
44
2
8
44
1.50
91565266--91565426
39
4.1
39
88
1
225
31
27
24
16
1.97
91565966--91566065
50
2.0
50
100
0
200
34
18
18
30
1.94
91567753--91567856
40
2.6
40
92
3
165
23
21
29
25
1.99
91567664--91567828
89
1.9
89
84
5
226
25
20
28
25
1.99
91567753--91567870
40
2.9
41
85
9
145
25
20
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91575726--91575991
40
6.7
40
90
4
319
27
21
26
25
1.99
91575779--91576024
120
2.1
119
83
6
311
28
19
26
25
1.99
91576788--91576845
29
2.0
29
100
0
116
48
0
20
31
1.50
91576791--91576840
17
3.2
17
68
26
56
48
0
22
30
1.51
91605989--91606272
40
7.1
40
92
0
435
27
26
22
24
2.00
91614771--91614948
27
6.6
27
84
3
205
29
28
15
26
1.96
91614792--91614947
82
1.9
81
88
3
233
29
28
15
26
1.96
91638599--91638676
6
13.0
6
100
0
156
33
0
16
50
1.46
91638801--91639016
96
2.2
96
83
6
278
29
18
24
27
1.98
91638808--91639022
48
4.5
48
81
4
238
28
18
25
26
1.98
91638801--91639057
96
2.7
96
79
8
247
29
19
24
26
1.99
91644067--91644091
12
2.1
12
100
0
50
24
8
44
24
1.80
91646030--91646145
6
18.8
6
71
18
78
50
12
16
19
1.77
91646029--91646136
37
2.9
37
80
4
110
50
12
16
20
1.78
91646081--91646141
25
2.4
25
94
0
104
50
14
14
19
1.77
91646263--91646398
27
5.0
26
82
9
157
37
21
22
18
1.94
91646263--91646398
55
2.5
54
80
11
161
37
21
22
18
1.94
91646628--91646684
20
2.8
19
73
7
51
40
33
15
10
1.82
91646980--91647319
27
12.6
27
83
0
376
26
18
18
36
1.94
91647277--91647428
27
5.6
27
85
1
162
26
8
21
43
1.81
91647274--91647428
81
1.9
81
84
5
206
26
9
21
42
1.83
91653645--91653870
48
4.8
48
77
11
214
26
24
19
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91654470--91654515
24
2.0
23
88
12
69
60
0
8
30
1.26
91655197--91655272
27
2.8
27
80
7
91
63
19
1
15
1.38
91655277--91655325
21
2.2
21
82
10
53
65
4
0
30
1.11
91659118--91659183
14
4.7
14
72
7
53
45
30
3
21
1.67
91659118--91659218
21
4.8
21
69
15
73
43
29
3
22
1.71
91659226--91659268
15
2.9
15
79
6
52
46
34
0
18
1.50
91659855--91660079
74
3.1
73
69
14
174
29
18
17
34
1.94
91659780--91660079
148
2.0
148
85
3
408
28
17
19
35
1.94
91660290--91660340
20
2.6
20
84
3
68
25
37
0
37
1.56
91660893--91660956
31
2.1
31
96
0
119
31
26
6
35
1.81
91662562--91662589
9
3.1
9
100
0
56
21
0
21
57
1.41
91663839--91663962
9
14.1
9
78
6
121
46
21
0
30
1.57
91676485--91676656
40
4.3
40
88
2
222
25
27
21
25
1.99
91676487--91676709
40
5.6
39
83
5
216
25
27
21
25
1.99
91676485--91676709
80
2.8
79
80
7
240
25
27
21
25
1.99
91676641--91676718
40
1.9
41
82
10
97
26
28
20
24
1.99
91681577--91681616
19
2.1
19
90
0
62
45
2
2
50
1.28
91688763--91688820
15
4.1
14
77
18
50
29
0
5
65
1.14
91702578--91702935
179
2.0
179
100
0
716
27
19
17
35
1.95
91706215--91706260
23
2.0
24
83
12
60
43
10
8
36
1.71
91706389--91706430
18
2.2
20
87
8
61
57
4
2
35
1.33
91706388--91706439
19
2.7
20
82
11
63
57
7
1
32
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91706416--91706466
25
2.0
25
84
0
66
66
3
3
25
1.26
91718701--91718753
23
2.4
22
76
20
56
9
18
1
69
1.25
91722480--91722532
23
2.4
22
76
20
56
9
18
1
69
1.25
91728554--91728605
19
2.7
18
88
8
68
26
1
1
69
1.10
91742162--91742280
43
2.8
43
80
1
132
31
31
15
21
1.95
91746634--91746748
52
2.2
53
82
1
133
30
16
26
26
1.97
91746661--91746748
26
3.4
25
79
13
97
29
18
27
25
1.98
91751785--91751815
7
4.4
7
100
0
62
29
0
29
41
1.56
91751953--91752000
23
2.1
23
96
0
87
27
14
33
25
1.94
91774729--91774797
29
2.4
29
92
0
120
34
27
17
20
1.95
91775940--91775987
10
4.8
10
85
10
71
20
8
2
68
1.26
91775928--91775987
20
3.0
20
87
0
84
21
6
3
68
1.28
91776703--91776736
18
1.9
18
94
5
61
26
11
5
55
1.58
91785875--91786056
40
4.6
40
89
2
260
24
21
26
26
2.00
91796721--91797341
325
1.9
325
98
0
1215
31
25
16
27
1.96
91797256--91797349
46
2.1
46
86
4
129
29
30
20
19
1.97
91804482--91804519
19
2.0
20
85
15
53
39
23
0
36
1.55
91804749--91804919
93
1.8
93
91
0
279
28
28
21
21
1.98
91804744--91804916
46
3.7
46
77
10
190
29
27
21
21
1.98
91813026--91813221
50
3.9
49
80
4
223
29
26
18
26
1.98
91813039--91813221
49
3.7
49
80
6
224
28
26
18
25
1.98
91813026--91813219
100
1.9
101
89
1
300
29
25
18
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91816338--91816498
49
3.3
49
72
11
168
22
27
21
29
1.99
91816338--91816565
97
2.4
97
91
0
366
22
28
19
29
1.98
91816338--91816565
48
4.7
49
72
13
168
22
28
19
29
1.98
91816385--91816567
48
3.8
48
73
9
183
21
30
18
29
1.97
91816540--91816793
47
5.5
46
78
6
203
23
28
17
30
1.97
91818114--91818225
29
3.9
29
82
3
129
26
33
14
25
1.94
91822024--91822062
20
2.0
20
100
0
78
25
20
23
30
1.98
91824692--91824798
55
1.9
55
81
3
126
26
27
28
17
1.98
91831044--91831348
40
7.7
40
88
3
411
26
27
20
24
1.99
91839136--91839387
40
6.3
39
92
3
371
26
27
20
25
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310