genome.fa.s13.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  126  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40436584--40436757	46	3.8	46	77	10	183	24	21	27	27	1.99
40436578--40436750	93	1.9	93	90	2	276	24	21	27	26	2.00
40442304--40442481	27	6.6	27	85	3	214	29	28	15	26	1.96
40442325--40442480	82	1.9	81	88	3	233	29	28	15	26	1.96
40442560--40442693	67	2.0	67	98	0	259	29	27	4	38	1.76
40443093--40443117	13	1.9	13	100	0	50	32	16	20	32	1.94
40444381--40444505	62	2.0	62	87	3	180	20	29	16	34	1.94
40445062--40445185	63	2.0	63	96	0	230	29	19	23	28	1.98
40448151--40448276	63	2.0	63	96	0	234	22	32	16	28	1.96
40452333--40452382	19	2.6	19	96	0	91	18	34	32	16	1.92
40453976--40454790	92	8.8	92	99	0	1576	29	30	19	21	1.97
40454833--40454946	57	2.0	57	94	0	201	25	26	16	31	1.97
40457700--40458012	40	7.6	40	75	14	255	25	27	20	25	1.99
40457700--40458011	79	3.8	78	73	16	256	25	27	20	25	1.99
40457675--40457933	129	2.0	129	99	0	509	26	27	20	25	1.99
40462973--40463193	110	2.0	110	97	0	415	31	18	7	42	1.78
40470211--40470381	93	1.8	93	96	0	315	28	27	21	22	1.99
40470203--40470378	46	3.8	46	80	10	223	28	27	21	22	1.99
40470804--40470863	30	2.0	30	90	0	93	30	25	8	36	1.85
40474135--40474249	46	2.5	46	80	1	124	19	17	13	50	1.78
40474284--40474385	45	2.3	46	88	6	147	23	20	18	37	1.94
40474386--40474479	46	2.0	47	89	2	145	19	12	18	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40476150--40476242	40	2.3	42	87	7	129	32	16	20	31	1.94
40476231--40476324	41	2.3	41	96	0	170	23	15	29	30	1.96
40476170--40476349	41	4.4	40	80	7	139	29	16	23	30	1.96
40479895--40480072	27	6.6	27	82	3	178	29	27	15	26	1.96
40479916--40480071	82	1.9	81	86	3	224	29	27	16	26	1.96
40479895--40480086	82	2.3	83	76	11	207	30	26	15	28	1.96
40489438--40489607	49	3.5	48	77	7	157	25	27	20	26	1.99
40489670--40489778	46	2.4	46	77	10	125	23	27	19	29	1.98
40493459--40493497	20	2.0	20	90	10	62	35	17	0	46	1.49
40498140--40498251	29	3.9	29	86	6	149	28	31	15	25	1.95
40498131--40498241	58	1.9	57	88	1	168	27	31	15	25	1.95
40504021--40504096	26	2.9	26	74	3	71	22	13	22	42	1.88
40506257--40506322	32	2.1	32	97	0	123	30	15	18	36	1.91
40507081--40507161	40	2.0	40	95	0	144	35	13	18	32	1.90
40507707--40507811	52	2.0	52	98	0	201	29	20	7	42	1.79
40507949--40507983	18	1.9	18	88	0	52	48	0	0	51	1.00
40510795--40510848	27	2.0	27	85	0	72	38	14	7	38	1.75
40513323--40513367	15	2.9	16	77	12	58	55	13	11	20	1.68
40516188--40516232	22	2.0	22	100	0	90	26	22	22	28	1.99
40517415--40517466	27	1.9	27	84	0	68	42	13	7	36	1.73
40520920--40520961	19	2.3	19	95	4	77	23	19	9	47	1.78
40521850--40521892	22	2.0	23	86	9	63	58	4	4	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40521912--40521936	10	2.5	10	100	0	50	20	0	8	72	1.10
40522770--40522806	20	1.9	18	89	10	56	37	5	8	48	1.56
40526395--40526426	15	2.1	15	100	0	64	50	25	6	18	1.70
40527967--40528018	25	2.1	24	89	3	77	28	40	9	21	1.84
40529129--40529188	21	2.8	22	78	16	63	26	1	1	70	1.07
40529127--40529188	22	3.1	20	74	17	58	25	1	1	70	1.05
40529319--40529371	20	2.9	19	75	13	58	62	5	0	32	1.19
40546884--40548326	47	30.6	47	97	1	2441	29	29	8	32	1.87
40547204--40547278	22	3.3	22	65	7	60	28	32	12	28	1.92
40551832--40551866	16	2.2	16	89	0	52	57	20	14	8	1.63
40552117--40552195	29	2.7	29	84	0	104	26	17	29	26	1.98
40552095--40552224	57	2.3	58	78	6	140	29	16	28	25	1.97
40558333--40558526	54	3.5	54	78	12	194	27	22	14	35	1.94
40558333--40558525	27	6.9	27	77	15	160	26	22	15	35	1.94
40558402--40558525	62	2.0	62	93	0	212	25	21	16	37	1.93
40558439--40558506	35	1.9	35	87	0	100	23	22	14	39	1.91
40558554--40558884	27	12.3	27	79	4	283	31	7	19	40	1.80
40558515--40558864	81	4.3	81	80	2	222	33	7	19	39	1.80
40558571--40558885	81	3.9	81	82	2	321	30	7	20	40	1.80
40558624--40558884	54	4.9	54	88	2	364	31	7	20	40	1.79
40565835--40565880	24	1.9	24	82	8	58	26	4	6	63	1.38
40567967--40568015	21	2.3	21	96	3	89	46	26	8	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40570089--40570164	37	2.1	37	90	5	118	36	18	10	34	1.85
40574655--40574899	55	4.6	52	77	8	223	33	17	26	22	1.96
40574662--40574862	108	1.8	110	86	4	291	31	17	27	22	1.97
40575101--40575131	16	1.9	16	93	0	53	41	0	19	38	1.51
40581189--40581230	20	2.1	20	100	0	84	26	9	28	35	1.88
40592168--40592235	33	2.1	33	91	5	111	32	2	39	25	1.71
40595874--40596038	40	4.2	40	83	6	210	24	28	22	24	1.99
40595874--40596038	79	2.1	80	84	5	210	24	28	22	24	1.99
40598531--40598578	19	2.5	19	82	0	60	33	33	22	10	1.88
40605693--40605808	43	2.7	42	80	6	135	25	16	24	33	1.96
40614318--40614368	25	2.0	26	96	3	95	29	23	19	27	1.98
40614399--40614439	21	2.0	21	95	0	73	34	19	17	29	1.94
40614400--40614439	10	3.9	10	87	6	62	32	20	17	30	1.95
40622608--40622876	46	5.8	46	77	14	293	29	28	20	21	1.98
40622616--40622879	93	2.8	93	97	0	492	28	29	20	21	1.98
40622662--40622828	47	3.6	46	79	14	216	29	29	19	22	1.98
40624720--40624770	25	2.0	25	84	0	66	31	21	19	27	1.97
40624791--40624852	21	3.0	21	88	2	90	30	16	17	35	1.92
40624802--40624841	10	3.9	10	93	6	71	32	17	20	30	1.95
40626878--40626934	22	2.6	22	74	0	60	33	17	21	28	1.96
40628261--40628326	33	2.0	33	93	0	114	25	12	18	43	1.84
40635567--40635650	28	3.2	28	65	25	83	23	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40635565--40635802	50	4.8	50	83	2	298	24	18	26	30	1.97
40635532--40635797	50	5.3	51	81	3	252	24	19	26	29	1.98
40635532--40635810	150	1.9	150	95	0	504	24	18	26	30	1.98
40635532--40635797	101	2.6	100	82	2	264	24	19	26	29	1.98
40636483--40636637	27	5.7	27	79	4	161	39	22	9	29	1.85
40636483--40636637	81	1.9	81	82	2	195	39	22	9	29	1.85
40636477--40636652	81	2.2	81	79	2	192	38	22	8	30	1.84
40636563--40636689	27	4.7	27	69	11	73	39	24	7	29	1.82
40636764--40636931	6	27.3	6	74	15	103	19	16	14	50	1.78
40636767--40636847	19	4.7	18	67	22	57	19	19	14	45	1.85
40636758--40636922	49	3.3	49	78	5	152	19	16	13	50	1.78
40636764--40636905	25	5.7	25	80	5	153	19	16	14	50	1.79
40637195--40637230	15	2.4	15	95	0	63	22	8	16	52	1.70
40649799--40649861	31	2.0	31	90	0	99	30	15	14	39	1.87
40650914--40650951	20	1.9	20	89	10	60	31	15	5	47	1.68
40658686--40658868	64	2.8	63	76	8	181	22	30	16	29	1.96
40660866--40660985	23	5.0	24	89	7	174	28	20	22	28	1.99
40661179--40661241	31	2.0	31	93	0	108	36	15	23	23	1.94
40680483--40680519	17	2.2	18	85	9	51	48	8	16	27	1.74
40681060--40681092	14	2.4	14	100	0	66	48	0	9	42	1.35
40691324--40691488	47	3.5	46	80	4	206	21	15	28	34	1.94
40691468--40691509	21	2.0	21	90	0	66	16	21	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40694577--40694887	40	7.6	40	77	14	305	26	27	21	24	1.99
40694577--40694888	79	3.8	80	77	14	323	26	27	21	24	1.99
40694573--40694828	127	2.0	127	100	0	512	26	27	20	25	1.99
40702091--40702118	13	2.2	13	100	0	56	64	0	14	21	1.29
40703918--40704161	49	4.9	49	82	4	301	29	27	19	24	1.98
40703932--40704161	99	2.3	99	87	3	329	29	27	19	23	1.98
40704809--40704868	30	2.0	30	83	6	77	30	25	8	36	1.85
40706160--40706211	26	2.0	26	96	0	95	26	28	11	32	1.91
40707280--40707313	3	11.0	3	87	6	50	70	0	0	29	0.87
40707630--40707759	64	2.0	65	93	1	226	24	12	18	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310