Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  101  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33504156--33504215
3
20.0
3
85
0
84
60
3
0
36
1.14
33504970--33504995
3
8.7
3
100
0
52
65
0
0
34
0.93
33505123--33505157
17
2.1
17
94
0
61
57
2
0
40
1.14
33505542--33505570
5
5.8
5
100
0
58
20
0
17
62
1.33
33509604--33509690
23
3.7
24
71
13
81
52
0
0
47
1.00
33510717--33510752
17
2.1
17
94
0
63
72
0
0
27
0.85
33511700--33511798
50
2.0
48
80
11
110
18
12
4
65
1.40
33513648--33513688
18
2.3
18
91
8
66
41
31
4
21
1.74
33516510--33516549
20
2.0
21
90
9
66
42
0
5
52
1.23
33517981--33518045
19
3.5
18
75
6
58
61
1
1
35
1.15
33527183--33527242
30
2.0
30
83
3
75
41
0
38
20
1.52
33527457--33527493
9
4.1
9
92
0
65
29
10
13
45
1.77
33527547--33527577
9
3.4
9
90
0
53
38
22
12
25
1.90
33528715--33528749
17
2.1
17
89
10
54
71
5
2
20
1.19
33529104--33529174
30
2.4
30
97
2
135
56
8
5
29
1.52
33529548--33529586
19
2.1
19
85
0
51
33
5
7
53
1.51
33530210--33530272
27
2.3
27
88
0
90
30
19
31
19
1.96
33530345--33530383
19
2.1
19
85
4
53
35
7
0
56
1.28
33530538--33530607
19
3.7
19
82
3
97
37
10
0
52
1.35
33530823--33530861
19
2.1
19
90
4
62
38
5
0
56
1.22
33530828--33530870
18
2.3
19
88
4
61
41
9
0
48
1.35
33537010--33537070
24
2.5
24
82
15
72
39
1
0
59
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33537011--33537070
25
2.5
23
82
15
68
40
1
0
58
1.08
33537288--33537330
22
2.0
22
85
0
59
11
18
25
44
1.84
33537424--33537564
43
3.3
43
83
3
151
31
26
21
20
1.98
33537402--33537632
43
5.4
44
76
5
143
27
25
19
26
1.99
33537945--33537994
21
2.4
21
86
0
64
4
42
18
36
1.69
33537965--33538131
66
2.6
64
85
2
199
13
27
17
41
1.87
33540153--33540526
187
2.0
187
100
0
748
37
16
18
28
1.92
33542977--33543026
16
3.2
16
94
2
84
36
0
16
48
1.46
33542980--33543035
9
6.8
9
73
19
59
35
0
16
48
1.46
33542980--33543086
43
2.7
40
80
12
121
39
0
12
47
1.47
33543683--33543718
15
2.5
15
90
4
56
63
8
16
11
1.49
33546280--33546305
7
3.7
7
100
0
52
57
26
0
15
1.38
33548019--33548130
41
2.7
41
80
5
111
22
25
23
28
1.99
33548107--33548338
41
5.7
40
78
7
218
31
25
24
19
1.98
33548122--33548352
123
1.9
123
81
5
279
31
24
25
18
1.98
33548570--33548648
39
2.0
39
97
0
149
27
34
25
12
1.92
33549475--33549512
14
2.8
13
88
7
51
36
2
0
60
1.11
33549646--33549709
26
2.5
26
84
2
76
37
12
0
50
1.41
33549668--33549717
26
1.9
26
87
0
73
34
14
0
52
1.42
33549833--33549865
14
2.4
14
100
0
66
48
15
0
36
1.45
33550733--33550825
41
2.3
40
83
3
107
19
24
21
34
1.96
33553486--33553553
34
2.0
34
85
5
93
29
23
26
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33554340--33554568
126
1.8
126
90
3
372
29
20
19
31
1.97
33557233--33557290
28
2.1
28
83
6
73
46
6
1
44
1.40
33561278--33561311
16
2.1
17
88
5
52
55
0
0
44
0.99
33564621--33564654
16
2.1
17
88
5
52
47
2
0
50
1.16
33584146--33584359
108
2.0
108
97
0
401
24
17
21
36
1.94
33584367--33584396
13
2.3
13
94
0
51
73
16
10
0
1.09
33589333--33589902
285
2.0
285
100
0
1140
22
15
22
40
1.91
33591473--33591516
21
2.1
21
91
8
72
43
4
0
52
1.22
33591728--33591753
12
2.2
12
100
0
52
50
7
0
42
1.31
33595531--33595620
45
2.0
45
88
0
135
45
16
24
13
1.83
33596892--33597106
44
4.9
44
69
4
128
26
20
26
26
1.99
33596892--33597174
132
2.1
132
90
2
444
27
18
26
27
1.98
33597140--33597525
100
3.8
100
90
1
603
27
19
26
26
1.99
33597140--33597525
201
1.9
200
89
1
603
27
19
26
26
1.99
33597152--33597525
50
7.5
50
70
4
277
28
19
26
25
1.99
33599309--33599352
21
2.1
21
91
8
72
43
2
0
54
1.12
33603873--33603925
21
2.5
21
81
0
70
32
35
5
26
1.80
33607294--33607333
20
2.0
20
85
9
55
55
25
17
2
1.55
33608223--33608339
3
38.7
3
84
5
155
31
4
1
62
1.24
33610611--33610654
19
2.3
20
84
7
56
27
20
11
40
1.86
33617019--33617079
22
2.9
21
87
4
70
37
8
1
52
1.41
33617029--33617079
22
2.3
22
93
0
84
39
9
0
50
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33617661--33617868
109
1.9
109
93
2
355
29
16
20
33
1.95
33619609--33619660
24
2.1
25
89
3
79
32
0
0
67
0.91
33620352--33620421
3
23.3
3
100
0
140
65
0
34
0
0.93
33623554--33623592
7
5.7
7
84
6
53
43
28
2
25
1.68
33623556--33623598
20
2.1
21
91
4
70
44
25
4
25
1.73
33623612--33623668
20
2.8
21
81
2
71
22
3
26
47
1.67
33623655--33623679
7
3.6
7
100
0
50
12
0
44
44
1.41
33624971--33625027
7
8.1
7
100
0
114
56
0
0
43
0.99
33626691--33626819
25
5.2
25
72
12
81
34
22
24
18
1.96
33628056--33628123
29
2.2
33
82
15
83
44
13
0
42
1.43
33629159--33629197
21
1.9
20
85
15
53
48
7
7
35
1.61
33631658--33631707
24
2.2
24
85
7
68
26
8
2
64
1.32
33632498--33632646
30
5.0
30
81
8
178
36
22
1
40
1.62
33632504--33632646
59
2.4
59
83
6
180
37
22
1
39
1.63
33632798--33632835
19
2.0
19
89
0
58
68
26
0
5
1.11
33632986--33633052
17
3.9
17
73
13
57
77
7
14
0
0.97
33632986--33633061
20
4.1
18
75
21
68
77
6
15
0
0.96
33633145--33633206
11
5.5
11
82
17
83
79
0
20
0
0.74
33633148--33633215
7
9.3
7
81
15
84
80
0
19
0
0.70
33633144--33633212
22
3.1
22
89
6
113
78
0
21
0
0.76
33633462--33633491
13
2.4
12
89
10
51
83
0
16
0
0.65
33633464--33633513
15
3.4
15
84
10
59
80
0
20
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33633473--33633514
8
5.2
8
80
11
50
80
0
19
0
0.70
33633600--33633656
26
2.2
25
84
3
69
21
3
8
66
1.34
33633661--33633710
6
8.7
6
82
10
52
32
2
0
66
1.03
33633834--33633938
20
5.4
20
72
14
60
38
12
6
42
1.69
33634055--33634286
17
13.1
18
75
13
205
31
13
10
44
1.77
33634055--33634286
35
6.6
35
75
13
190
31
13
10
44
1.77
33634358--33634398
20
2.0
21
86
9
59
43
4
12
39
1.63
33634378--33634431
17
3.3
17
74
10
58
33
9
11
46
1.71
33634379--33634430
16
3.2
16
78
10
61
30
9
11
48
1.72
33640564--33640620
10
5.6
10
81
10
71
84
14
1
0
0.71
33640567--33640615
6
8.5
6
78
17
59
83
16
0
0
0.64
33640562--33640632
15
4.9
15
77
16
69
83
12
4
0
0.79
33640562--33640606
19
2.4
19
100
0
90
84
15
0
0
0.62
33640567--33640620
25
2.2
25
86
6
74
83
14
1
0
0.73
33640564--33640625
19
3.5
17
78
13
63
83
12
3
0
0.75
33641259--33641590
78
4.3
78
89
3
431
30
14
17
37
1.90
33641691--33642598
78
11.9
76
87
5
936
27
14
19
37
1.91
33641691--33642598
150
5.9
151
85
6
953
27
14
19
37
1.91
33642790--33642937
30
5.0
30
80
3
156
35
22
3
38
1.71
33642799--33642937
59
2.3
58
85
4
170
36
23
2
37
1.70
33643088--33643126
20
2.0
20
94
0
69
64
30
0
5
1.15
33643437--33643540
7
14.3
7
77
15
104
79
0
19
0
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33643437--33643547
20
5.8
20
73
17
101
80
0
18
1
0.81
33643437--33643540
23
4.1
27
78
14
114
79
0
19
0
0.78
33643782--33643837
17
3.4
17
78
4
53
82
0
17
0
0.68
33643782--33643834
7
7.7
7
77
10
56
83
0
16
0
0.66
33643780--33643834
15
3.5
16
83
13
62
81
0
18
0
0.68
33643780--33643837
24
2.4
25
85
2
73
81
0
18
0
0.70
33643780--33643835
16
3.6
16
81
15
64
82
0
17
0
0.68
33643982--33644031
6
8.7
6
84
8
52
30
2
0
68
1.01
33644375--33644696
17
18.3
17
68
17
162
30
12
12
44
1.79
33644375--33644547
35
5.0
34
84
4
195
30
14
12
43
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313