Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  177  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55028010--55028066
26
2.1
27
84
9
73
66
3
29
0
1.08
55028947--55028972
11
2.4
11
100
0
52
23
0
15
61
1.33
55031534--55031586
15
3.2
15
80
17
52
54
1
1
41
1.22
55031617--55031655
20
2.0
20
94
0
69
48
0
2
48
1.15
55031738--55031814
14
5.0
15
71
20
52
42
15
9
32
1.78
55031754--55031793
20
2.0
20
90
0
62
50
12
10
27
1.72
55031742--55031808
34
1.9
35
90
3
109
46
13
8
31
1.74
55031777--55031816
14
2.9
14
84
0
53
42
17
7
32
1.77
55032335--55032418
25
3.4
25
91
0
132
20
26
19
34
1.96
55038504--55038541
20
1.9
20
88
0
58
52
0
10
36
1.36
55039403--55039502
41
2.5
42
86
4
134
39
12
24
25
1.89
55056624--55056663
21
2.0
20
90
5
62
32
2
0
65
1.06
55057112--55057156
17
2.5
18
82
7
56
64
2
6
26
1.30
55058988--55059025
6
6.2
6
85
14
51
81
0
18
0
0.69
55058948--55059030
35
2.4
34
80
13
89
74
3
18
3
1.11
55064080--55064115
15
2.5
14
86
8
54
44
8
0
47
1.33
55066029--55066101
5
14.6
5
73
18
55
76
1
2
19
0.98
55066021--55066083
12
5.0
12
80
16
65
73
0
3
23
0.98
55066022--55066100
17
4.8
16
77
16
72
77
1
2
18
0.96
55066014--55066095
26
3.3
26
83
14
102
74
1
3
20
1.04
55066025--55066100
12
6.0
12
70
10
53
77
1
2
18
0.95
55072424--55072459
15
2.5
14
86
8
54
44
8
0
47
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55073817--55073858
15
2.8
15
92
0
66
52
0
47
0
1.00
55073820--55073865
15
3.1
15
90
0
65
50
0
50
0
1.00
55090424--55090458
17
1.9
19
88
11
56
51
0
20
28
1.47
55090550--55090613
28
2.4
28
82
15
89
34
6
18
40
1.76
55091252--55091342
35
2.6
35
87
5
121
35
16
23
25
1.95
55091448--55091477
6
4.8
6
95
4
51
70
0
0
30
0.88
55094151--55094246
41
2.5
37
76
18
113
42
2
16
38
1.60
55094619--55094870
136
1.9
136
91
0
414
30
22
19
26
1.98
55095651--55095708
20
3.0
20
92
7
95
55
0
0
44
0.99
55109736--55109763
14
2.0
14
100
0
56
42
21
28
7
1.79
55116748--55116983
118
2.0
118
97
0
445
27
22
17
32
1.96
55121031--55121055
12
2.1
12
100
0
50
8
8
8
76
1.18
55122130--55122178
17
2.9
18
73
11
50
57
0
2
40
1.10
55123330--55123386
22
2.7
21
75
22
57
49
1
22
26
1.60
55130680--55130714
14
2.6
14
95
4
63
54
5
0
40
1.24
55139164--55139205
7
5.9
7
84
15
59
83
0
0
16
0.65
55139169--55139205
5
7.6
5
88
11
51
83
0
0
16
0.64
55144006--55144101
32
3.2
31
81
8
92
32
3
3
61
1.27
55144044--55144096
24
2.2
24
86
0
70
33
1
5
58
1.32
55151559--55151623
30
2.2
30
83
5
78
33
0
6
60
1.22
55153814--55153876
13
4.8
13
80
0
72
38
23
6
31
1.80
55160747--55160776
6
5.0
6
100
0
60
16
0
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55161611--55161661
21
2.3
23
83
12
63
35
1
7
54
1.40
55169915--55169982
5
13.0
5
82
14
84
76
0
1
22
0.87
55169911--55169982
27
2.7
27
80
8
94
76
0
1
22
0.86
55169915--55169982
32
2.2
31
89
7
102
76
0
1
22
0.87
55175869--55175912
19
2.3
19
88
7
63
59
27
2
11
1.44
55182972--55183098
51
2.5
49
80
10
132
47
0
1
51
1.10
55185319--55185369
4
12.8
4
100
0
102
50
23
0
25
1.49
55185408--55185470
26
2.5
26
89
2
92
31
19
22
26
1.97
55192652--55192689
20
2.0
19
90
10
60
50
0
2
47
1.15
55192807--55192857
23
2.3
22
80
12
59
41
1
1
54
1.22
55193266--55193311
19
2.4
19
88
0
65
50
0
8
41
1.33
55194163--55194200
12
3.2
12
82
14
51
50
2
5
42
1.39
55194403--55194657
43
6.0
42
88
2
314
22
27
20
29
1.99
55194403--55194656
85
3.0
84
90
2
364
22
27
20
29
1.99
55194403--55194654
128
2.0
128
88
1
371
23
26
20
29
1.99
55194403--55194670
86
3.1
85
89
3
376
23
27
19
28
1.99
55195178--55195239
25
2.4
26
89
2
90
40
1
14
43
1.55
55195178--55195249
17
4.2
17
72
13
58
40
1
13
44
1.53
55195342--55195401
17
3.5
17
80
8
68
36
0
16
46
1.47
55195345--55195401
9
6.8
8
80
7
60
33
0
17
49
1.47
55195353--55195525
46
3.6
46
72
13
159
34
0
17
47
1.53
55195345--55195430
17
4.8
17
73
16
66
34
0
16
48
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55195369--55195525
53
2.9
54
72
14
128
34
0
17
47
1.53
55196396--55196429
14
2.2
16
90
10
54
52
0
0
47
1.00
55196368--55196445
38
2.1
38
83
9
97
53
2
2
41
1.28
55196699--55196737
20
2.0
20
89
0
60
43
7
0
48
1.31
55198844--55199053
101
2.0
105
88
5
311
26
12
12
48
1.78
55199059--55199413
138
2.6
138
94
2
628
26
16
12
44
1.83
55199561--55199609
23
2.2
22
85
10
64
40
44
0
14
1.45
55199846--55199889
23
2.0
23
90
4
72
34
36
0
29
1.58
55200174--55200658
114
4.3
113
93
1
747
25
26
22
25
2.00
55205958--55206266
159
2.0
156
80
5
345
27
19
14
39
1.90
55209149--55209220
27
2.7
26
81
14
92
27
23
15
33
1.95
55212411--55212473
30
2.1
30
82
5
74
22
7
9
60
1.54
55212878--55212911
15
2.3
15
89
0
50
32
29
17
20
1.96
55217314--55217362
23
2.1
23
85
14
66
59
6
8
26
1.50
55220539--55220619
25
3.2
25
70
13
76
37
25
13
23
1.92
55225299--55225329
16
1.9
16
93
0
53
32
25
16
25
1.96
55238274--55238382
50
2.2
49
85
4
148
30
22
23
23
1.99
55238280--55238376
25
3.9
24
79
11
106
29
21
24
23
1.99
55241608--55241645
20
1.9
19
94
5
67
28
28
5
36
1.79
55250493--55250522
15
2.0
15
100
0
60
53
6
20
20
1.67
55251534--55251599
26
2.6
26
83
7
73
15
25
22
36
1.93
55256392--55256434
19
2.3
18
84
11
52
44
13
4
37
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55266297--55266394
49
2.0
49
93
0
169
40
11
12
35
1.78
55268679--55268716
12
3.2
12
88
0
58
7
15
42
34
1.76
55272659--55272703
15
2.9
15
84
12
56
75
0
2
22
0.91
55276495--55276534
20
2.0
20
85
0
53
40
2
15
42
1.60
55277601--55277633
14
2.3
15
89
5
50
66
0
12
21
1.23
55282505--55282549
8
5.1
8
80
19
54
40
0
2
57
1.11
55282505--55282543
20
2.0
20
94
0
69
41
0
2
56
1.13
55291027--55291084
27
2.1
27
84
6
73
13
41
0
44
1.44
55291029--55291072
21
2.1
21
87
8
63
13
36
0
50
1.42
55297614--55297714
18
5.6
18
77
3
87
27
16
18
36
1.93
55297600--55297714
38
3.1
37
77
9
126
27
16
19
36
1.93
55297606--55297715
36
2.9
37
79
5
132
28
17
18
36
1.93
55298720--55298756
18
2.0
19
89
5
58
16
24
0
59
1.37
55304051--55304120
22
3.2
22
77
0
68
11
7
18
62
1.50
55304051--55304123
11
6.6
11
75
0
56
12
6
17
63
1.50
55304075--55304150
36
2.2
33
81
6
80
17
6
14
61
1.53
55306670--55306723
3
18.0
3
100
0
108
33
0
0
66
0.92
55308343--55308399
22
2.5
22
73
15
55
45
8
8
36
1.66
55308414--55308480
3
21.7
3
79
11
64
67
0
5
26
1.14
55310057--55310347
44
6.8
43
71
12
145
27
21
21
29
1.99
55325998--55326065
35
1.9
35
87
0
100
23
17
8
50
1.74
55327586--55327616
9
3.4
9
90
0
53
38
22
12
25
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55331212--55331287
38
2.0
39
94
2
136
31
17
19
31
1.95
55336311--55336343
15
2.2
15
94
0
57
66
0
0
33
0.92
55336422--55336455
14
2.3
15
90
5
52
47
11
5
35
1.65
55340500--55340539
14
2.9
14
84
0
53
32
7
17
42
1.77
55340508--55340574
34
1.9
35
84
3
91
32
10
11
44
1.75
55340523--55340562
20
2.0
20
85
0
53
27
12
12
47
1.77
55341949--55342018
27
2.6
27
80
8
79
51
20
2
25
1.61
55343458--55343592
40
3.1
40
75
22
144
41
8
11
38
1.72
55350924--55351147
49
4.6
48
82
4
234
26
32
15
25
1.95
55350924--55351147
98
2.3
98
81
6
258
26
32
15
25
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313