genome.fa.s26.2.7.7.80.10.50.1000.297.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  297  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91275696--91275746	21	2.6	19	79	11	59	35	19	9	35	1.85
91282467--91282533	33	2.0	33	94	0	116	49	17	8	23	1.75
91284001--91284030	14	2.1	15	93	6	53	63	0	0	36	0.95
91286443--91286469	13	2.1	13	100	0	54	48	29	0	22	1.51
91287329--91287374	16	2.9	16	78	12	51	45	0	2	52	1.13
91287269--91287479	107	2.0	108	96	0	388	44	1	5	49	1.33
91287436--91287477	15	2.7	16	82	14	52	45	0	2	52	1.13
91287427--91287468	15	2.9	15	82	10	52	47	0	0	52	1.00
91287603--91287712	45	2.6	44	81	11	133	31	28	5	34	1.80
91287693--91287760	16	4.2	16	92	0	109	35	38	0	26	1.57
91309576--91309605	15	2.0	15	100	0	60	33	20	6	40	1.78
91313787--91313821	11	3.1	11	87	4	52	65	0	0	34	0.93
91315054--91315092	20	2.0	20	84	0	51	15	25	17	41	1.89
91317427--91317501	27	2.7	29	68	12	77	46	2	4	46	1.35
91343021--91343094	29	2.6	29	86	4	96	27	16	31	25	1.96
91347697--91347748	10	5.1	10	82	11	52	61	3	0	34	1.14
91350021--91350058	19	2.0	19	85	10	51	34	0	2	63	1.09
91355956--91355993	3	12.7	3	100	0	76	65	0	34	0	0.93
91360678--91360728	24	2.2	23	82	3	57	3	19	1	74	1.07
91370368--91370437	30	2.4	29	83	7	79	77	1	4	17	1.01
91370389--91370440	6	8.7	6	87	8	79	80	0	1	17	0.80
91375353--91375410	30	1.9	30	86	6	82	10	32	37	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91375701--91375795	50	1.9	50	93	0	163	25	22	24	28	1.99
91375706--91375830	50	2.5	49	83	6	144	24	21	24	28	1.99
91384807--91384851	18	2.5	18	100	0	90	15	24	37	22	1.93
91384807--91384851	9	5.0	9	77	0	54	15	24	37	22	1.93
91384807--91384859	18	2.9	18	91	0	61	20	20	37	20	1.94
91394223--91394272	12	4.2	12	80	15	50	72	4	18	6	1.22
91394236--91394282	22	2.1	23	88	4	69	70	4	21	4	1.22
91395769--91395855	21	4.0	23	80	10	92	14	21	25	37	1.92
91402094--91402143	12	4.2	12	80	15	50	72	4	18	6	1.22
91402107--91402153	22	2.1	23	88	4	69	70	4	21	4	1.22
91403640--91403712	21	3.3	23	83	11	82	15	24	26	34	1.94
91403652--91403712	21	2.8	21	90	5	86	13	24	27	34	1.93
91407723--91407764	18	2.3	18	87	0	57	33	30	0	35	1.58
91413425--91413456	6	5.2	6	92	7	55	62	0	0	37	0.95
91415814--91415849	6	6.0	6	100	0	72	50	0	0	50	1.00
91418001--91418043	17	2.4	18	88	3	61	41	0	2	55	1.12
91417970--91418053	44	1.9	44	85	0	114	36	3	3	55	1.34
91425025--91425117	18	5.2	18	93	0	159	26	24	17	31	1.97
91425025--91425117	36	2.6	36	98	0	177	26	24	17	31	1.97
91429734--91429805	18	4.0	18	94	0	126	26	23	18	31	1.97
91434419--91434511	18	5.2	18	90	0	141	29	25	15	30	1.95
91434425--91434511	36	2.4	36	98	0	165	29	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91439745--91439842	49	2.0	49	91	0	160	36	16	27	19	1.93
91440861--91440998	41	3.4	41	92	0	213	34	24	21	19	1.96
91441031--91441107	38	2.0	39	87	2	111	50	29	0	19	1.48
91442030--91442076	8	6.0	8	90	5	51	76	0	0	23	0.78
91442023--91442073	14	3.4	15	75	8	50	74	0	0	25	0.82
91442030--91442063	15	2.2	16	89	5	52	85	0	0	14	0.60
91444651--91444675	2	12.5	2	100	0	50	0	48	0	52	1.00
91453793--91453874	32	2.6	32	100	0	164	32	21	12	32	1.91
91457485--91457522	18	2.1	18	100	0	76	36	10	21	31	1.87
91463245--91463313	36	1.9	36	84	0	93	37	14	11	36	1.83
91463322--91463392	18	3.9	18	69	10	54	43	14	9	32	1.78
91463510--91463634	53	2.4	53	87	0	187	41	21	18	18	1.90
91465238--91465272	15	2.3	15	95	0	61	0	25	0	74	0.82
91466758--91466813	18	3.5	15	81	18	60	37	10	16	35	1.83
91466756--91466834	35	2.2	37	86	13	121	37	10	16	35	1.82
91466756--91466827	19	3.9	19	89	10	123	37	11	15	36	1.83
91466756--91466850	17	4.8	22	84	12	79	36	9	15	37	1.80
91470696--91470742	23	2.0	23	83	0	58	44	10	27	17	1.81
91474850--91476108	221	5.7	221	78	12	1291	32	18	21	26	1.97
91475402--91475667	78	3.4	78	91	0	417	32	19	23	24	1.97
91475590--91475799	89	2.4	87	78	9	212	30	18	22	29	1.97
91476051--91476266	78	2.8	78	87	2	317	32	19	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91474936--91476266	674	2.0	675	92	0	2232	32	18	22	26	1.97
91476206--91476434	45	5.1	45	76	8	223	30	15	28	25	1.96
91476206--91476469	89	2.9	88	74	12	241	29	15	28	26	1.96
91476787--91476842	18	3.5	15	81	18	60	37	10	16	35	1.83
91476785--91476863	35	2.2	37	86	13	121	37	10	16	35	1.82
91476785--91476856	19	3.9	19	89	10	123	37	11	15	36	1.83
91476785--91476879	17	4.8	22	84	12	79	36	9	15	37	1.80
91479083--91479142	29	2.1	29	83	0	75	51	8	10	30	1.64
91479256--91479330	38	2.0	37	86	2	105	28	10	21	40	1.86
91481082--91481142	29	2.1	29	100	0	122	26	6	26	40	1.80
91482231--91482299	34	2.0	34	100	0	138	27	17	8	46	1.77
91491981--91492022	21	2.0	22	85	4	59	33	0	0	66	0.92
91503168--91503215	16	2.9	17	75	9	55	39	6	0	54	1.26
91506696--91506740	21	2.1	21	87	4	63	80	6	4	8	1.03
91508433--91508477	19	2.4	18	85	10	56	22	2	4	71	1.15
91509960--91510047	28	3.3	27	77	17	78	63	0	2	34	1.07
91509978--91510067	18	4.8	18	73	11	67	62	1	3	33	1.19
91512683--91512734	25	2.1	25	82	7	61	67	7	0	25	1.17
91513002--91513042	19	2.2	19	100	0	82	36	4	0	58	1.20
91517790--91517835	23	2.0	23	84	12	60	45	10	6	36	1.65
91517797--91517841	23	2.0	23	82	8	56	40	13	8	37	1.76
91518922--91518961	19	2.1	19	100	0	80	42	15	5	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91520864--91520921	8	7.0	8	79	14	64	37	1	1	58	1.18
91520864--91520914	18	2.9	17	88	8	68	39	1	1	56	1.22
91520881--91520931	16	3.2	16	83	8	61	39	0	0	60	0.97
91521672--91521717	19	2.5	19	82	10	51	41	4	4	50	1.42
91522762--91522816	11	5.1	11	82	4	67	20	45	3	30	1.68
91522761--91522817	22	2.7	21	83	5	78	19	45	5	29	1.72
91528070--91528475	210	1.9	210	86	1	580	32	14	20	32	1.92
91529295--91529319	7	3.6	7	100	0	50	28	28	28	16	1.97
91532100--91532652	210	2.7	207	84	5	703	34	14	18	32	1.91
91543062--91543144	40	2.1	40	90	4	132	25	22	18	33	1.96
91545883--91545965	40	2.1	40	90	4	132	24	22	19	33	1.97
91559518--91559923	210	1.9	210	86	2	573	32	14	21	32	1.93
91564581--91564633	24	2.2	24	96	0	97	43	3	3	49	1.38
91565307--91565348	14	2.9	15	78	3	50	45	0	2	52	1.13
91567646--91567691	21	2.2	21	96	0	83	30	23	45	0	1.53
91569656--91569717	32	1.9	31	81	12	72	58	12	4	24	1.54
91575078--91575127	10	5.0	10	81	13	59	68	2	8	22	1.26
91578343--91578582	132	1.8	132	87	1	356	25	18	19	36	1.94
91585284--91585449	84	2.0	83	96	1	305	31	16	6	45	1.74
91587894--91588516	210	3.0	209	88	1	899	33	14	20	31	1.92
91590931--91590973	20	2.0	22	86	8	63	27	2	0	69	1.00
91591540--91591825	147	1.9	147	79	6	321	36	20	11	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91593169--91593214	19	2.4	19	85	7	58	47	13	19	19	1.81
91595497--91595612	9	13.2	9	77	15	118	56	0	9	32	1.37
91595500--91595614	3	39.3	3	76	8	94	57	0	8	33	1.35
91595696--91595745	7	7.1	7	82	11	50	66	2	2	30	1.14
91595695--91595745	11	4.5	11	79	11	50	64	1	1	31	1.15
91595694--91595745	17	3.0	17	83	11	70	65	1	1	30	1.14
91595926--91596013	3	29.0	3	70	15	56	63	1	7	27	1.29
91596140--91596191	12	4.4	11	83	13	59	67	1	3	26	1.18
91596124--91596182	15	4.1	15	74	12	61	66	3	5	25	1.28
91598455--91598481	12	2.2	12	100	0	54	7	14	29	48	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313