genome.fa.s26.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  143  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45931889--45931914	2	13.0	2	100	0	52	50	0	50	0	1.00
45939481--45939519	16	2.5	17	88	12	57	2	28	0	69	1.02
45941391--45941419	15	1.9	15	100	0	58	44	13	0	41	1.44
45942601--45942672	30	2.4	31	77	13	87	56	0	1	41	1.07
45950070--45950113	21	2.1	21	100	0	88	38	22	4	34	1.75
45954239--45954412	45	3.9	45	90	0	249	25	18	15	40	1.90
45954526--45954557	16	2.0	16	100	0	64	50	25	12	12	1.75
45957543--45957640	23	4.3	23	89	2	153	31	25	21	21	1.98
45957550--45957638	45	2.0	45	93	0	151	31	25	22	20	1.98
45969921--45969981	21	2.8	22	78	16	65	39	3	8	49	1.49
45972840--45972898	29	2.0	29	96	0	109	13	33	20	32	1.91
45975025--45975127	51	2.0	51	100	0	206	23	25	18	33	1.97
45975751--45975801	24	2.0	26	82	14	63	56	21	0	21	1.42
45982287--45982324	20	1.9	20	88	0	58	39	0	0	60	0.97
45985037--45985082	22	2.1	22	100	0	92	21	21	8	47	1.77
45989539--45989704	86	1.9	87	93	1	289	42	21	12	24	1.86
46001888--46001918	16	1.9	16	93	0	53	3	29	0	67	1.06
46002154--46002240	40	2.2	40	89	4	131	21	13	10	54	1.69
46005016--46005070	2	27.5	2	100	0	110	50	0	49	0	1.00
46012136--46012503	184	2.0	184	90	3	578	32	14	14	38	1.86
46014081--46014148	31	2.2	31	81	0	82	41	7	17	33	1.77
46014652--46014681	4	7.5	4	92	0	51	26	0	23	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46027570--46027621	26	2.0	26	92	0	86	40	17	21	21	1.91
46040972--46041004	17	2.1	17	88	11	52	72	0	0	27	0.85
46051067--46051104	19	2.0	19	90	10	60	55	0	0	44	0.99
46058740--46058800	31	2.0	31	90	0	95	45	6	6	40	1.56
46059431--46059460	14	2.1	14	93	0	51	73	10	0	16	1.09
46059427--46059508	33	2.5	32	76	4	83	69	14	4	10	1.33
46071097--46071127	13	2.3	14	94	5	55	61	0	16	22	1.34
46075971--46076009	17	2.2	18	86	4	53	46	17	7	28	1.76
46078168--46078229	30	2.1	30	100	0	124	48	19	9	22	1.78
46083490--46083628	58	2.4	58	86	2	181	24	28	8	38	1.85
46084610--46084649	20	2.0	20	95	0	71	27	20	10	42	1.83
46085056--46085080	11	2.3	11	100	0	50	56	8	0	36	1.29
46085780--46085822	15	2.8	14	80	19	50	0	23	0	76	0.78
46085784--46085871	25	3.4	25	81	4	86	3	21	3	71	1.16
46085828--46085868	16	2.6	16	81	14	50	4	17	7	70	1.28
46085833--46085875	20	2.2	20	87	8	61	6	13	4	74	1.19
46090761--46090802	17	2.5	17	80	3	50	28	0	4	66	1.12
46090794--46090827	17	1.9	18	88	5	52	29	2	2	64	1.22
46091623--46091657	15	2.3	15	90	0	52	8	0	34	57	1.29
46091727--46091816	34	2.7	34	81	9	98	41	0	13	45	1.43
46091751--46091826	34	2.2	35	88	9	120	36	1	11	50	1.48
46091888--46092154	125	2.1	125	87	2	383	35	17	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46091987--46092340	186	1.9	186	88	2	532	33	18	17	30	1.94
46095255--46095279	11	2.3	11	100	0	50	72	0	0	28	0.86
46095625--46095660	18	2.0	18	88	0	54	38	11	25	25	1.88
46097091--46097244	43	3.6	42	83	6	159	23	19	24	33	1.97
46101184--46101265	41	2.0	41	100	0	164	29	21	12	36	1.90
46105219--46105282	30	2.1	30	94	0	110	40	3	28	28	1.71
46106336--46106391	29	1.9	29	88	0	85	48	12	12	26	1.77
46109256--46109355	37	2.7	38	75	14	93	39	3	6	52	1.42
46116136--46116253	37	3.5	37	80	13	121	33	27	10	28	1.89
46116438--46116606	41	4.1	41	92	0	284	23	27	20	28	1.98
46116444--46116606	82	2.0	82	100	0	326	23	28	19	28	1.98
46116834--46116874	17	2.5	17	88	7	59	43	14	2	39	1.59
46116827--46116874	17	2.6	18	77	12	53	43	16	2	37	1.60
46123638--46123724	41	2.1	41	93	0	147	22	27	20	28	1.99
46123945--46123988	17	2.7	17	89	6	65	43	18	2	36	1.63
46125539--46125592	28	1.9	28	85	7	74	46	0	25	27	1.53
46126035--46126140	42	2.5	42	95	1	185	27	16	28	27	1.97
46128632--46128690	25	2.3	27	80	16	72	27	22	5	45	1.73
46129619--46129662	17	2.6	17	81	0	52	36	0	0	63	0.95
46129646--46129766	11	11.4	11	69	21	62	39	2	0	57	1.12
46129689--46129766	11	7.4	11	73	17	67	43	2	0	53	1.14
46131757--46131796	21	2.0	20	90	5	62	32	5	27	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46133944--46133968	9	2.8	9	100	0	50	56	0	0	44	0.99
46134069--46134105	16	2.3	17	86	13	60	62	0	0	37	0.96
46134589--46134629	19	2.2	19	86	8	57	58	7	0	34	1.26
46134589--46134629	20	2.1	19	86	4	55	58	7	0	34	1.26
46142571--46142644	11	6.3	12	76	19	59	4	24	2	68	1.19
46149656--46149850	93	2.1	92	88	4	286	44	4	4	47	1.41
46149828--46149926	52	2.0	52	80	11	118	45	6	2	46	1.39
46149883--46149916	17	2.0	17	94	0	59	44	5	0	50	1.26
46149888--46149935	17	3.0	16	79	17	55	45	6	2	45	1.40
46149989--46150030	15	2.7	16	82	14	52	45	0	2	52	1.13
46149980--46150021	15	2.9	15	82	10	52	47	0	0	52	1.00
46149964--46150277	154	2.0	156	95	1	569	46	5	3	44	1.42
46150130--46150164	18	2.0	17	88	5	52	45	0	0	54	0.99
46150397--46150435	16	2.4	16	86	0	51	28	33	2	35	1.71
46150410--46150466	16	3.6	16	95	0	87	33	36	0	29	1.58
46150989--46151032	18	2.4	19	88	3	63	36	2	2	59	1.23
46152284--46152371	31	2.9	30	81	3	106	38	18	10	32	1.84
46154270--46154335	32	2.1	32	97	0	123	40	12	18	28	1.86
46157687--46157733	24	2.0	23	84	8	60	36	2	6	55	1.37
46166384--46166447	31	2.1	31	88	2	94	39	15	6	39	1.73
46172396--46172431	17	2.1	17	90	10	56	38	0	5	55	1.23
46177816--46177891	25	3.2	25	65	24	74	28	14	23	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46177816--46177906	45	2.0	45	97	0	173	28	13	24	34	1.93
46178711--46178745	12	2.9	12	91	0	61	25	25	34	14	1.94
46185231--46185269	18	2.2	17	86	13	53	33	0	20	46	1.51
46185495--46185564	23	3.0	23	89	0	113	22	21	22	32	1.98
46190333--46190440	37	2.7	39	77	9	112	32	24	18	25	1.97
46191408--46191445	18	2.1	18	85	9	51	52	0	0	47	1.00
46198369--46198407	13	3.2	13	79	20	57	56	0	0	43	0.99
46199760--46199784	12	2.1	12	100	0	50	40	16	32	12	1.84
46199981--46200019	16	2.5	16	79	4	53	64	0	0	35	0.94
46209783--46209826	21	2.1	21	100	0	88	18	38	13	29	1.89
46212649--46212684	16	2.2	16	95	0	63	27	0	33	38	1.57
46212664--46212755	45	2.1	44	83	2	112	30	5	28	35	1.80
46212807--46213122	156	2.0	157	95	0	571	43	3	5	47	1.42
46213056--46213097	15	2.7	16	82	14	52	52	2	0	45	1.13
46213065--46213106	15	2.9	15	82	10	52	52	0	0	47	1.00
46213196--46213230	18	2.0	18	88	5	54	54	0	0	45	0.99
46223699--46223758	30	2.0	31	86	3	86	43	5	8	43	1.56
46241948--46241979	3	10.7	3	100	0	64	34	0	0	65	0.93
46243947--46244004	30	1.9	31	82	10	75	63	3	3	29	1.27
46244837--46244871	17	2.1	17	89	10	54	65	5	8	20	1.40
46248870--46248925	28	1.9	28	85	7	76	32	19	12	35	1.89
46250324--46250402	38	2.1	38	100	0	158	20	2	31	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46255451--46255576	42	3.0	42	85	2	164	42	19	23	15	1.88
46255443--46255566	21	6.0	20	69	6	77	41	20	23	13	1.88
46259727--46259801	6	12.5	6	76	18	59	77	6	1	14	1.04
46259727--46259811	5	16.0	5	75	15	57	76	7	1	15	1.06
46265574--46265598	13	1.9	13	100	0	50	92	8	0	0	0.40
46278609--46278848	127	1.9	126	83	9	310	36	17	12	33	1.88
46279449--46279483	15	2.4	14	90	9	61	20	5	31	42	1.75
46280404--46280524	62	1.9	63	94	1	217	42	22	5	29	1.77
46282315--46282390	13	5.6	13	72	17	57	78	0	17	3	0.89
46282326--46282389	15	4.5	14	77	15	69	79	0	15	4	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313