genome.fa.s26.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  207  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63559984--63560038	20	2.7	21	83	11	69	25	10	16	47	1.79
63561939--63562006	24	2.9	24	76	4	77	44	1	1	52	1.19
63561972--63562036	26	2.5	28	76	20	70	43	0	1	55	1.09
63562613--63562639	13	2.1	13	100	0	54	33	14	29	22	1.94
63575199--63576087	294	3.0	294	98	0	1724	30	25	13	31	1.94
63577297--63577326	3	10.0	3	92	0	51	30	0	70	0	0.88
63578283--63578320	3	13.0	3	88	5	60	0	28	0	71	0.87
63578442--63578510	31	2.3	30	80	12	79	23	7	20	49	1.73
63580836--63580899	29	2.1	29	81	16	69	32	10	18	37	1.86
63582886--63582931	23	2.0	23	91	4	76	23	15	6	54	1.64
63587547--63587856	43	7.3	42	83	6	349	25	19	30	25	1.98
63587547--63587856	42	7.3	43	84	3	371	25	19	30	25	1.98
63587547--63587839	86	3.5	85	83	4	387	24	18	30	26	1.98
63588380--63588740	51	7.1	51	85	0	454	29	13	19	37	1.89
63588380--63588734	153	2.3	152	88	1	512	30	12	19	37	1.89
63588890--63588937	25	1.9	25	82	0	60	20	6	33	39	1.78
63590103--63590221	42	2.7	43	83	5	132	47	12	15	23	1.80
63590387--63590554	67	2.5	67	81	0	183	31	19	22	27	1.97
63590430--63590572	67	2.1	67	77	2	144	34	14	23	27	1.94
63602308--63602453	78	1.9	78	86	2	213	30	21	14	32	1.93
63604120--63604151	15	2.0	17	88	11	50	56	21	0	21	1.43
63607352--63607429	26	3.2	26	64	23	69	19	44	6	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63607336--63607433	47	2.1	47	98	0	187	16	44	7	31	1.74
63608388--63608439	21	2.5	21	83	0	68	28	1	32	36	1.69
63625422--63625530	28	3.9	28	78	5	96	24	33	32	9	1.87
63634550--63634734	27	6.9	27	85	3	232	43	20	16	19	1.88
63634550--63634730	80	2.2	80	84	10	228	43	20	16	19	1.88
63640253--63640360	36	2.7	41	77	19	136	34	14	5	45	1.69
63645345--63645369	13	1.9	13	100	0	50	88	4	8	0	0.64
63646501--63646708	39	5.3	39	90	2	303	25	21	27	25	1.99
63646447--63646708	78	3.3	79	84	8	306	25	21	27	25	2.00
63648814--63648868	20	2.7	21	83	11	69	25	10	16	47	1.79
63650769--63650885	24	4.7	24	70	15	85	45	1	1	51	1.21
63650802--63650881	29	2.9	29	76	14	78	43	1	1	53	1.16
63651443--63651469	13	2.1	13	100	0	54	33	14	29	22	1.94
63664027--63664621	294	2.0	294	98	0	1136	30	24	13	31	1.93
63665831--63665860	3	10.0	3	92	0	51	30	0	70	0	0.88
63666817--63666854	3	13.0	3	88	5	60	0	28	0	71	0.87
63666976--63667044	31	2.3	30	80	12	79	23	7	20	49	1.73
63669370--63669433	29	2.1	29	81	16	69	32	10	18	37	1.86
63673442--63673529	45	1.9	46	83	2	115	32	19	4	43	1.71
63677696--63677742	24	1.9	25	91	4	78	38	0	36	25	1.56
63678856--63679027	27	6.4	27	87	2	247	43	20	17	18	1.89
63695356--63695566	40	5.3	40	89	4	239	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63707012--63707182	90	1.9	90	86	0	243	23	29	13	33	1.93
63708276--63708318	21	2.0	21	90	0	68	27	16	30	25	1.97
63711272--63711329	9	6.3	9	73	11	55	70	5	1	22	1.16
63712738--63712979	44	5.5	44	81	6	310	32	23	13	30	1.93
63712709--63712980	89	3.1	88	86	4	395	31	24	13	30	1.94
63712954--63713295	88	3.9	87	86	2	459	25	25	23	26	2.00
63713062--63713296	43	5.4	43	66	8	141	24	27	22	25	2.00
63713021--63713546	176	3.0	175	81	3	520	25	23	22	28	1.99
63713371--63713942	218	2.6	218	93	0	966	24	23	21	30	1.99
63713897--63714122	86	2.6	87	87	3	319	25	23	20	30	1.99
63713971--63714107	42	3.2	42	72	8	141	25	21	25	27	2.00
63715417--63715446	6	4.8	6	95	4	51	0	13	3	83	0.77
63723431--63723530	49	2.1	48	85	5	132	38	11	14	37	1.81
63725143--63725273	42	3.1	42	94	0	217	29	19	19	32	1.96
63727571--63727700	65	2.0	65	100	0	260	30	15	21	32	1.94
63731046--63731092	21	2.2	21	81	7	60	57	0	8	34	1.29
63735317--63735367	6	8.3	6	79	12	50	39	5	0	54	1.24
63735407--63735460	23	2.3	23	84	9	65	40	3	3	51	1.37
63741307--63741362	19	2.9	19	82	10	78	55	0	0	44	0.99
63748212--63748256	20	2.3	19	85	11	56	48	2	0	48	1.13
63752804--63752839	18	1.9	19	94	5	65	44	0	5	50	1.25
63752805--63752847	18	2.3	19	84	8	61	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63755896--63755949	26	2.1	26	85	0	72	37	5	1	55	1.34
63756818--63756858	14	2.9	14	85	3	55	73	0	2	24	0.96
63757311--63757360	16	3.1	16	80	8	57	58	0	0	42	0.98
63757850--63757898	21	2.4	21	93	3	82	36	2	0	61	1.08
63757862--63757908	21	2.2	21	84	0	58	48	2	0	48	1.13
63764336--63764392	30	1.9	29	85	3	78	54	7	3	35	1.45
63768619--63768670	27	1.9	27	84	0	68	17	34	17	30	1.93
63768618--63768676	27	2.2	26	79	8	64	20	32	18	28	1.96
63771168--63771220	20	2.6	21	82	11	74	64	7	24	3	1.37
63772476--63772506	15	2.0	16	93	6	55	77	0	0	22	0.77
63772650--63772688	18	2.2	18	86	4	53	28	0	2	69	1.02
63772657--63772707	25	2.0	25	82	17	61	29	0	3	66	1.09
63772916--63772953	16	2.3	17	86	4	51	36	0	0	63	0.95
63773230--63773280	20	2.4	22	87	6	70	31	0	0	68	0.90
63773475--63773520	20	2.2	20	88	3	65	71	2	2	23	1.08
63778767--63778827	23	2.7	22	76	2	59	63	0	1	34	1.04
63778814--63778847	17	1.9	18	88	5	52	55	2	2	38	1.30
63778942--63778980	11	3.5	11	78	0	51	69	5	2	23	1.21
63778907--63778980	33	2.2	33	85	2	94	62	6	4	27	1.39
63778919--63778988	33	2.1	33	83	0	86	62	8	5	22	1.45
63780127--63780198	26	2.8	25	81	4	90	30	9	9	50	1.68
63781831--63781906	27	2.8	27	86	7	93	27	13	11	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63788247--63788294	20	2.4	20	96	0	87	25	20	20	33	1.97
63795704--63795750	24	2.0	23	83	8	58	17	6	10	65	1.43
63809174--63809237	31	2.1	31	96	0	119	31	15	25	28	1.96
63811849--63811900	22	2.4	22	83	0	68	17	13	21	48	1.81
63814008--63814109	47	2.2	47	89	1	152	44	8	18	28	1.80
63814008--63814128	47	2.6	47	84	3	129	47	8	16	27	1.75
63815545--63815737	50	3.7	51	84	5	237	25	22	29	22	1.99
63815985--63816023	12	3.2	12	85	0	51	51	5	23	20	1.67
63828071--63828186	58	2.0	58	96	0	214	31	22	33	12	1.92
63829564--63829694	65	2.0	65	98	0	253	26	18	20	34	1.96
63830075--63830193	59	2.0	59	96	0	220	31	18	24	25	1.97
63836597--63836686	47	1.9	46	86	2	126	44	16	25	13	1.84
63837976--63838209	92	2.6	90	83	3	238	30	17	23	27	1.97
63838070--63838210	44	3.2	44	76	9	160	31	16	21	30	1.95
63837982--63838172	44	4.2	45	73	10	156	29	18	23	28	1.98
63838366--63838825	45	10.3	43	73	12	347	31	16	24	27	1.96
63838336--63838823	90	5.4	90	96	1	838	30	16	24	28	1.96
63839665--63839729	3	21.0	3	73	17	53	30	3	3	63	1.25
63839684--63839724	17	2.5	16	92	4	64	26	4	4	63	1.35
63839665--63839729	17	3.7	18	76	14	55	30	3	3	63	1.25
63844281--63844342	32	1.9	32	93	0	106	35	0	1	62	1.05
63844284--63844345	14	4.1	15	76	17	65	32	0	1	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63845421--63845471	16	3.1	16	75	8	50	27	3	0	68	1.07
63849451--63849522	19	3.6	19	74	20	58	52	2	5	38	1.39
63876224--63876313	28	3.2	28	80	9	94	15	11	13	60	1.60
63897731--63897794	32	2.0	33	84	9	87	42	0	7	50	1.31
63898212--63898279	25	2.6	25	81	9	66	57	4	4	33	1.39
63906368--63906608	42	5.7	42	79	6	229	27	24	20	27	1.99
63906408--63906608	86	2.4	83	84	5	242	26	23	20	28	1.99
63906593--63906623	15	2.1	15	100	0	62	12	19	22	45	1.84
63906550--63906666	58	2.0	58	81	6	139	20	24	19	35	1.96
63907037--63907086	21	2.4	21	96	0	91	2	50	16	32	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313