genome.fa.s26.2.7.7.80.10.50.1000.304.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  304  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93353919--93354001	23	3.6	23	85	0	103	48	31	13	7	1.69
93356306--93356386	40	2.0	41	86	11	114	38	2	1	58	1.20
93366819--93366859	19	2.2	19	90	0	64	53	7	0	39	1.29
93371896--93371934	17	2.3	17	86	8	53	64	0	0	35	0.94
93374454--93374519	13	5.1	13	73	14	64	37	22	4	34	1.75
93375571--93375776	76	2.7	77	75	7	202	22	19	8	48	1.76
93378958--93379046	39	2.3	39	84	5	119	42	0	6	50	1.28
93378972--93379044	38	1.9	38	88	5	112	43	0	8	47	1.33
93379746--93379774	2	14.5	2	100	0	58	0	48	0	51	1.00
93380384--93380489	42	2.5	42	89	3	160	57	2	10	29	1.46
93387128--93387220	18	5.2	18	93	0	159	31	17	24	26	1.97
93387128--93387220	36	2.6	36	98	0	177	31	17	24	26	1.97
93387753--93387806	22	2.5	21	72	3	54	29	5	46	18	1.72
93391655--93391692	17	2.2	17	86	9	51	71	2	0	26	1.00
93392152--93392215	30	2.2	30	83	8	78	40	14	10	34	1.80
93397344--93397441	27	3.5	28	90	2	135	26	13	28	31	1.94
93397372--93397454	27	3.0	27	87	5	96	30	12	25	32	1.92
93397344--93397455	28	4.0	27	83	6	98	28	12	25	33	1.92
93405905--93405931	12	2.2	12	100	0	54	51	7	0	40	1.30
93406378--93406475	27	3.5	28	90	2	135	26	13	28	31	1.94
93406406--93406488	27	3.0	27	87	5	96	30	12	25	32	1.92
93406378--93406489	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93412200--93412226	14	1.9	14	100	0	54	29	0	18	51	1.46
93413145--93413179	9	4.0	9	88	3	54	45	2	51	0	1.16
93413823--93413905	3	27.7	3	100	0	166	33	32	0	33	1.58
93413953--93414036	39	2.2	39	82	6	100	15	3	5	75	1.14
93414029--93414104	38	2.0	38	82	10	93	18	7	1	72	1.16
93420329--93420368	19	2.1	19	90	4	62	22	17	27	30	1.96
93420744--93420859	58	2.0	58	87	0	169	52	5	30	12	1.60
93425643--93425741	44	2.2	44	78	0	108	31	19	19	30	1.96
93425878--93426234	140	2.6	133	81	6	387	32	17	21	28	1.96
93426011--93426226	44	4.9	44	73	6	195	31	16	21	30	1.96
93426427--93426471	21	2.3	18	81	11	54	71	15	2	11	1.24
93427527--93427572	23	2.0	22	84	12	58	50	10	2	36	1.50
93427830--93430108	917	2.5	916	94	0	4076	31	21	12	34	1.90
93431268--93431301	3	11.3	3	93	0	59	32	2	0	64	1.08
93431437--93431480	16	2.8	16	76	13	54	15	6	4	72	1.22
93432439--93432489	13	3.9	13	81	0	66	29	7	29	33	1.85
93432439--93432489	26	2.0	26	92	0	84	29	7	29	33	1.85
93443165--93443229	30	2.2	28	79	15	69	43	12	9	35	1.74
93456543--93456765	40	5.6	40	83	6	168	25	21	27	26	1.99
93456543--93456767	80	2.8	79	81	4	229	24	20	27	26	1.99
93466606--93466738	69	1.9	70	89	1	205	31	14	17	36	1.89
93468517--93468756	48	5.0	48	93	2	399	34	6	28	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93468517--93468756	98	2.5	96	91	2	399	34	6	28	30	1.83
93468892--93469006	37	3.1	37	97	0	221	29	17	27	25	1.97
93472304--93472405	40	2.5	40	95	0	186	22	25	23	28	1.99
93479116--93479734	308	2.0	308	97	1	1161	33	21	14	30	1.93
93479660--93479769	40	2.8	40	97	0	202	23	26	22	27	2.00
93482074--93482180	28	3.8	28	87	4	135	34	13	23	28	1.92
93482353--93482500	41	3.6	40	77	7	136	27	19	29	23	1.98
93482353--93482500	40	3.6	41	75	7	149	27	19	29	23	1.98
93484439--93484473	18	1.9	18	88	0	52	31	8	25	34	1.86
93485305--93485414	26	4.3	26	93	2	179	28	23	19	29	1.98
93485464--93485539	11	7.5	11	66	16	56	30	19	13	36	1.90
93485492--93485550	20	2.5	24	74	25	72	32	22	11	33	1.90
93485464--93485540	20	3.8	20	96	0	127	31	19	12	36	1.90
93485466--93485558	40	2.4	40	85	7	120	32	20	11	35	1.89
93485533--93485568	18	2.1	17	90	10	56	36	22	5	36	1.78
93491246--93491280	18	1.9	18	88	0	52	31	8	25	34	1.86
93491887--93492021	26	5.3	26	90	3	181	29	22	19	28	1.98
93492071--93492147	20	3.8	20	92	0	118	31	20	11	36	1.89
93492099--93492153	20	2.4	24	74	25	73	34	21	10	32	1.89
93492193--93492240	25	1.9	25	82	0	60	27	12	22	37	1.90
93497739--93497770	15	2.0	17	88	11	50	31	3	6	59	1.38
93504531--93504596	30	2.2	30	86	0	96	19	31	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93508102--93508409	40	7.7	40	98	0	562	29	20	27	22	1.98
93520761--93520797	18	2.1	18	90	5	58	16	40	21	21	1.91
93525305--93525336	16	2.0	16	100	0	64	12	43	18	25	1.85
93527133--93527224	40	2.3	40	81	3	107	36	35	13	14	1.84
93527572--93527608	17	2.1	18	90	5	58	10	37	29	21	1.88
93529464--93529526	26	2.4	27	84	5	76	31	19	19	30	1.96
93532913--93533095	41	4.4	41	87	3	242	24	15	26	32	1.96
93538974--93539034	30	2.0	30	100	0	122	26	13	13	47	1.79
93548362--93548412	23	2.2	23	92	0	84	23	29	17	29	1.97
93550235--93550267	17	1.9	17	100	0	66	36	15	18	30	1.91
93557745--93557803	24	2.4	25	86	8	77	62	0	5	32	1.17
93564493--93564589	49	2.0	48	91	0	149	23	32	16	25	1.95
93573065--93573135	22	3.3	21	82	5	88	22	11	8	57	1.60
93573065--93573206	44	3.1	43	78	7	131	21	17	7	53	1.68
93573104--93573168	23	3.0	21	78	10	67	18	21	9	50	1.74
93573695--93573734	16	2.4	17	87	4	55	32	0	20	47	1.50
93580565--93580593	13	2.1	14	93	6	51	20	0	3	75	0.94
93581288--93581330	23	1.9	23	85	4	61	6	2	30	60	1.35
93585639--93585709	36	1.9	37	88	5	108	40	9	11	38	1.74
93596186--93596288	53	1.9	53	94	0	179	43	23	12	20	1.86
93598656--93598680	7	3.6	7	100	0	50	76	12	0	12	1.04
93603348--93603408	13	4.3	13	73	17	50	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93603355--93603408	15	3.7	15	77	2	56	25	22	27	24	2.00
93603345--93603419	30	2.5	30	82	2	89	28	21	24	26	1.99
93608050--93608117	5	14.2	5	86	11	90	44	17	0	38	1.49
93610894--93610960	27	2.5	28	80	9	77	73	5	14	5	1.23
93610996--93611021	2	13.0	2	100	0	52	50	0	0	50	1.00
93611108--93611134	2	13.5	2	100	0	54	48	0	0	51	1.00
93626859--93626921	30	2.1	30	96	0	117	57	12	3	26	1.51
93629091--93629142	25	2.1	25	85	0	68	21	15	32	30	1.94
93629632--93629808	48	3.7	48	86	3	223	34	10	15	38	1.83
93634096--93634147	20	2.7	18	80	13	59	42	0	1	55	1.10
93634105--93634142	10	3.8	10	83	13	51	44	0	0	55	0.99
93634101--93634142	20	2.0	21	90	4	68	45	0	0	54	0.99
93640398--93640444	21	2.2	22	92	3	78	21	19	38	21	1.94
93645403--93645437	18	1.9	18	94	0	61	14	5	14	65	1.44
93648341--93648379	6	6.5	6	81	0	51	17	2	2	76	1.01
93652835--93652945	55	2.0	55	100	0	222	44	18	9	28	1.80
93654111--93654136	13	2.0	13	100	0	52	84	0	0	15	0.62
93654682--93654758	10	7.4	10	70	21	52	24	2	0	72	0.97
93654683--93654760	22	3.8	21	80	17	76	25	2	0	71	0.98
93654707--93654731	12	2.1	12	100	0	50	32	0	0	68	0.90
93654683--93654770	19	4.5	18	73	22	63	26	2	0	71	0.98
93657676--93657751	27	3.3	22	76	18	73	48	9	0	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93657683--93657741	27	2.2	26	88	5	91	49	8	0	42	1.33
93657698--93657741	13	3.3	13	76	17	54	52	9	0	38	1.33
93657700--93657742	14	3.1	14	80	6	61	48	9	0	41	1.35
93663215--93663754	271	2.0	272	91	4	885	34	20	10	35	1.87
93667939--93668130	3	64.0	3	74	6	120	59	1	8	30	1.33
93668803--93668827	3	8.3	3	100	0	50	36	0	0	64	0.94
93679737--93679881	40	3.6	40	77	12	154	25	22	26	24	2.00
93679743--93679904	80	2.0	79	80	10	179	27	20	25	25	1.99
93693613--93693889	92	3.0	92	99	0	545	56	9	11	22	1.64
93706091--93706125	17	2.1	17	88	0	52	34	8	5	51	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313