Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  148  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47144304--47144553
100
2.4
104
88
6
357
20
29
24
26
1.99
47144648--47144679
13
2.5
13
94
0
55
56
12
0
31
1.37
47151877--47152061
50
3.7
50
99
0
361
16
32
23
26
1.96
47152156--47152187
13
2.5
13
94
0
55
56
12
0
31
1.37
47152397--47152456
30
2.0
30
87
3
86
30
23
3
43
1.70
47154400--47154446
23
2.0
23
84
8
60
59
14
2
23
1.46
47154348--47154494
76
1.9
77
83
4
190
52
13
3
30
1.57
47154639--47154681
22
1.9
24
86
13
65
74
9
0
16
1.06
47154723--47154781
21
2.8
21
80
14
59
3
27
0
69
1.04
47154861--47154932
27
2.7
27
75
0
72
9
30
31
27
1.89
47155332--47155379
19
2.5
19
86
0
69
75
0
14
10
1.06
47155343--47155389
19
2.4
19
85
3
58
65
2
21
10
1.33
47159619--47159663
23
2.0
23
90
0
72
33
4
20
42
1.72
47161178--47161359
59
3.2
59
60
21
141
37
17
31
13
1.88
47161161--47161386
113
2.0
113
100
0
452
35
18
30
15
1.92
47170162--47170222
31
2.0
31
84
12
81
31
1
3
63
1.20
47170312--47171524
254
4.8
253
93
2
1981
35
15
10
37
1.83
47177551--47177584
11
3.1
11
91
0
50
76
2
11
8
1.12
47181401--47181456
21
2.7
21
76
13
62
42
3
1
51
1.29
47181545--47181582
19
2.0
19
100
0
76
21
21
5
52
1.66
47183324--47183395
16
4.5
16
83
0
90
40
6
25
27
1.81
47183581--47183701
61
2.0
61
83
6
154
52
4
4
39
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47191373--47191409
9
4.1
9
92
0
65
45
13
10
29
1.77
47194796--47195182
50
7.7
49
71
4
247
22
19
23
34
1.97
47194744--47195182
100
4.4
100
79
4
438
22
19
24
33
1.97
47194821--47195182
200
1.8
201
88
0
555
22
19
24
33
1.97
47195256--47195470
44
4.7
44
68
18
132
28
20
16
34
1.94
47195608--47195835
88
2.6
88
92
1
377
23
23
24
28
1.99
47196503--47196546
12
3.5
12
78
9
52
75
2
4
18
1.09
47196500--47196560
25
2.4
25
84
13
72
72
4
3
19
1.18
47196513--47196605
44
2.1
43
80
9
100
68
4
5
21
1.27
47196659--47196756
12
8.2
12
72
1
63
65
1
8
25
1.27
47196665--47196797
24
5.6
24
76
7
101
63
1
8
26
1.31
47196700--47196778
15
5.1
15
73
14
52
59
2
8
29
1.41
47197610--47197647
20
2.0
20
89
5
60
10
7
10
71
1.32
47198291--47199123
44
18.8
43
77
9
590
27
22
19
30
1.98
47198305--47199121
89
9.2
88
73
9
491
27
22
19
30
1.98
47198297--47199121
133
6.2
131
76
8
657
26
23
19
30
1.98
47198297--47199133
178
4.7
178
83
5
878
26
23
19
30
1.98
47205344--47205420
12
6.6
11
74
11
57
72
2
5
19
1.15
47205380--47205434
23
2.3
23
81
12
58
72
5
1
20
1.13
47205560--47205668
3
36.7
3
73
5
60
57
0
9
32
1.36
47205583--47205632
20
2.5
20
83
9
57
58
0
8
34
1.28
47206329--47206357
12
2.3
13
94
5
51
10
13
6
68
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47208780--47208837
22
2.9
19
80
14
80
27
8
18
44
1.79
47225835--47225875
21
2.0
21
90
0
64
29
21
29
19
1.98
47231295--47231340
13
3.5
13
81
0
56
34
2
4
58
1.30
47231291--47231340
26
1.9
26
91
0
82
32
2
6
60
1.32
47231850--47231901
24
2.2
24
96
0
95
15
3
25
55
1.57
47233987--47234025
14
2.6
15
84
8
53
38
2
0
58
1.12
47234113--47234163
15
3.2
16
75
10
52
23
0
5
70
1.09
47256017--47256064
17
2.8
18
81
6
64
35
0
6
58
1.23
47256051--47256103
17
2.9
19
83
10
58
37
0
5
56
1.23
47269031--47269112
43
1.9
42
82
7
103
28
7
28
36
1.84
47269338--47269485
6
23.7
6
79
8
134
20
7
13
58
1.59
47269696--47269823
62
2.1
61
88
5
188
23
7
20
48
1.75
47269994--47270058
28
2.3
28
97
2
121
30
16
26
26
1.97
47270937--47270996
25
2.5
24
78
5
66
25
8
21
45
1.80
47271008--47271071
26
2.5
26
87
2
85
29
9
10
50
1.69
47270946--47271182
96
2.5
95
85
2
318
27
8
17
47
1.76
47271107--47271192
26
3.3
25
85
6
100
30
5
11
52
1.61
47271919--47271970
21
2.5
22
84
9
72
34
40
5
19
1.75
47272683--47272766
36
2.3
36
82
11
93
53
20
7
19
1.68
47277985--47278100
43
2.7
43
82
12
148
23
20
28
27
1.99
47278304--47278387
36
2.3
37
85
2
107
34
5
17
41
1.74
47280073--47280105
16
2.1
16
94
0
57
27
0
9
63
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47280969--47281009
19
2.1
20
90
4
66
53
2
9
34
1.47
47284322--47284385
25
2.7
24
73
21
64
62
4
3
29
1.31
47289505--47289529
8
3.1
8
100
0
50
24
0
0
76
0.80
47292573--47292671
28
3.6
27
84
9
119
31
12
28
28
1.92
47310697--47311518
411
2.0
411
100
0
1644
32
17
22
27
1.96
47314313--47314898
50
11.6
50
70
7
234
22
20
25
31
1.98
47314253--47314960
101
7.0
101
91
0
1019
22
21
24
31
1.98
47318830--47318894
32
2.0
32
93
0
112
30
21
13
33
1.92
47331779--47331828
17
3.0
17
80
11
59
2
26
0
72
0.96
47331780--47331839
21
3.0
20
83
9
68
3
26
0
70
1.03
47347141--47347217
32
2.4
32
80
0
91
24
24
6
44
1.77
47351653--47351729
32
2.4
32
80
0
91
24
24
6
44
1.77
47360083--47360123
22
1.9
21
85
5
55
21
2
24
51
1.60
47375028--47375063
16
2.2
16
95
0
63
58
11
2
27
1.46
47375518--47375559
20
2.1
20
82
8
50
59
7
0
33
1.25
47375522--47375576
27
2.0
27
82
0
65
65
5
0
29
1.15
47384198--47384241
19
2.3
20
84
7
56
40
11
20
27
1.86
47387567--47387596
14
2.1
15
93
6
53
10
36
0
53
1.35
47391151--47391189
3
13.0
3
83
0
51
2
30
0
66
1.05
47394228--47394261
16
2.1
16
94
0
59
44
14
11
29
1.81
47395508--47395538
15
2.1
15
100
0
62
48
32
6
12
1.67
47395866--47395911
20
2.2
21
81
14
60
63
19
6
10
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47397431--47397463
16
2.1
16
88
5
50
63
12
0
24
1.28
47397888--47397930
18
2.4
19
80
11
54
41
9
6
41
1.64
47397966--47398032
35
1.9
35
100
0
134
35
14
11
37
1.84
47400914--47400953
19
2.1
19
90
0
62
37
10
15
37
1.80
47403588--47403612
10
2.5
10
100
0
50
48
0
8
44
1.32
47403661--47403838
29
6.3
29
90
7
294
29
0
25
45
1.54
47403669--47403838
53
3.1
53
89
9
268
28
0
25
46
1.53
47403661--47403838
82
2.1
86
91
6
292
29
0
25
45
1.54
47403884--47403998
36
3.2
36
65
11
92
46
15
4
33
1.66
47403916--47404026
25
4.6
25
68
20
83
45
14
2
37
1.59
47403844--47404028
71
2.6
71
95
0
334
44
14
3
37
1.62
47404429--47404464
18
2.0
18
88
0
54
30
8
36
25
1.85
47404520--47404556
13
2.9
13
96
4
67
10
24
40
24
1.87
47405128--47405152
7
3.6
7
100
0
50
60
12
0
28
1.32
47408032--47408087
22
2.6
21
83
8
67
19
21
10
48
1.79
47409564--47409634
26
2.7
26
84
0
88
22
15
28
33
1.95
47410425--47410450
12
2.2
12
100
0
52
84
0
15
0
0.62
47411116--47411237
42
2.8
44
78
10
121
25
18
27
28
1.98
47411162--47411314
43
3.6
43
81
0
155
28
16
22
32
1.96
47413285--47413466
91
2.0
91
98
0
355
35
13
16
34
1.87
47414089--47414132
4
11.0
4
85
0
52
22
0
6
70
1.11
47414347--47414381
16
2.2
16
89
0
52
28
8
0
62
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47419047--47419085
21
1.9
20
84
5
51
17
2
10
69
1.28
47419397--47419602
51
4.0
51
100
0
412
41
7
19
31
1.80
47426236--47426261
6
4.3
6
100
0
52
19
61
0
19
1.35
47431083--47431140
11
5.2
11
87
2
80
22
32
1
43
1.64
47431083--47431159
22
3.4
23
84
13
99
24
31
1
42
1.63
47431082--47431156
33
2.2
33
84
9
98
24
32
1
42
1.63
47431082--47431159
11
7.0
11
74
21
74
24
30
1
43
1.62
47432813--47432852
18
2.2
18
95
0
71
22
30
7
40
1.81
47433108--47433156
21
2.3
21
79
6
55
40
36
20
2
1.64
47435142--47435207
24
2.8
24
79
11
73
50
10
6
33
1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313