genome.fa.s26.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  150  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47670415--47670491	18	4.3	18	69	12	59	36	2	10	50	1.50
47670415--47670492	36	2.2	36	86	4	104	35	2	10	51	1.50
47674368--47674406	21	1.9	20	89	5	60	43	35	0	20	1.52
47676646--47676703	30	1.9	30	92	0	98	18	39	31	10	1.85
47678630--47678684	27	2.0	28	85	3	76	45	1	3	49	1.30
47684518--47684548	10	3.1	10	100	0	62	19	9	9	61	1.54
47691460--47691518	21	2.8	21	84	7	66	55	3	1	38	1.26
47691510--47691555	17	2.7	17	86	0	65	58	0	0	41	0.98
47695536--47695621	42	2.1	42	84	6	113	27	13	17	40	1.88
47698064--47698149	27	3.3	27	66	26	76	51	11	18	18	1.76
47699411--47699502	49	1.9	48	80	12	109	47	6	13	32	1.68
47702275--47702305	10	3.1	10	100	0	62	19	9	9	61	1.54
47702374--47702401	3	9.3	3	100	0	56	32	0	0	67	0.91
47704545--47704584	6	6.8	6	88	5	55	0	72	0	27	0.85
47712297--47712330	15	2.4	14	90	9	52	38	11	2	47	1.55
47715964--47716099	72	1.9	71	92	1	227	27	17	18	36	1.94
47718391--47718492	37	2.8	37	80	5	100	16	15	30	37	1.90
47720801--47720897	25	3.8	25	80	1	95	38	21	18	21	1.94
47734877--47734962	44	2.0	44	92	0	145	31	17	26	24	1.97
47737220--47737732	45	11.7	45	72	12	275	26	22	18	31	1.97
47737526--47737684	84	1.9	85	82	3	205	27	25	20	25	1.99
47738624--47738672	25	1.9	26	91	4	82	59	10	16	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47743125--47743200	37	2.1	36	87	2	107	26	27	7	38	1.84
47750152--47750211	8	7.1	8	71	17	50	58	0	1	40	1.08
47751584--47751621	20	2.0	20	89	5	60	28	5	10	55	1.56
47752811--47752852	22	1.9	22	85	9	59	66	0	2	30	1.04
47753432--47753461	8	3.9	8	91	8	53	90	0	0	10	0.47
47753432--47753460	15	1.9	15	100	0	58	89	0	0	10	0.48
47754932--47755140	45	4.7	45	73	4	181	25	25	18	30	1.98
47754922--47755171	45	5.6	43	67	16	125	26	24	19	29	1.98
47766412--47766449	20	2.0	20	89	5	60	28	5	10	55	1.56
47767386--47767415	8	3.9	8	91	8	53	90	0	0	10	0.47
47767386--47767414	15	1.9	15	100	0	58	89	0	0	10	0.48
47768114--47768160	22	2.0	24	84	8	62	10	14	4	70	1.31
47770550--47770636	45	1.9	46	84	11	117	43	9	14	32	1.77
47773948--47773974	4	6.8	4	100	0	54	0	22	0	77	0.76
47774738--47774780	18	2.2	21	88	12	65	62	0	0	37	0.95
47776064--47776089	9	2.9	9	100	0	52	46	0	0	53	1.00
47785621--47785645	13	1.9	13	100	0	50	40	20	0	40	1.52
47786067--47786125	29	2.0	29	100	0	118	33	27	3	35	1.74
47804812--47804869	20	2.9	20	89	0	71	6	29	25	37	1.82
47805539--47805665	24	5.4	24	71	14	93	22	14	25	36	1.93
47805539--47805756	47	4.6	47	85	4	271	22	15	24	37	1.93
47805610--47805731	23	5.2	22	71	14	68	24	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47805539--47805761	94	2.4	94	90	0	338	22	15	25	36	1.93
47805900--47805942	21	2.1	20	83	12	52	51	2	13	32	1.54
47811819--47811977	43	3.7	43	77	9	137	30	24	16	27	1.97
47820384--47820459	21	3.7	21	91	3	120	40	9	14	35	1.78
47820684--47820732	23	2.1	23	84	0	62	22	0	14	63	1.30
47821206--47821249	23	2.0	22	95	4	79	36	6	2	54	1.40
47837635--47837759	30	4.1	30	81	5	128	28	28	18	24	1.98
47837844--47837900	30	2.0	29	86	6	80	31	29	17	21	1.96
47838037--47838113	23	3.3	23	79	0	100	31	20	16	31	1.95
47849344--47849559	90	2.4	91	85	2	283	28	25	14	31	1.95
47850116--47850675	280	2.0	281	91	1	899	36	13	11	38	1.80
47852050--47852141	45	2.1	43	81	4	103	35	11	3	48	1.56
47867273--47867380	38	2.9	37	72	13	112	41	5	0	51	1.31
47873747--47873837	45	2.0	45	97	0	173	8	37	14	39	1.77
47877534--47877711	60	3.0	58	67	23	134	42	1	4	51	1.32
47877472--47877711	120	2.0	120	95	0	435	42	2	4	50	1.34
47877626--47877684	26	2.3	25	85	8	82	40	0	1	57	1.09
47877639--47877694	15	4.0	15	73	17	57	44	0	0	55	0.99
47883573--47883689	33	3.5	33	76	0	117	30	19	29	20	1.97
47883573--47883701	66	2.0	66	80	6	145	31	19	27	20	1.97
47883573--47883708	33	4.1	33	77	3	103	32	18	27	22	1.97
47888876--47888913	13	3.0	13	85	14	53	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47894035--47894073	3	13.0	3	100	0	78	0	33	0	66	0.92
47896721--47896758	14	2.8	13	88	7	58	47	2	13	36	1.56
47896996--47897194	34	5.8	34	81	2	220	22	22	16	39	1.92
47896996--47897184	103	1.8	103	94	0	333	22	22	16	39	1.92
47896995--47897201	69	3.0	69	82	3	247	22	22	15	39	1.92
47897042--47897206	34	4.8	34	86	1	222	23	24	14	38	1.92
47896996--47897206	103	2.0	103	89	0	323	22	22	15	39	1.91
47900228--47900314	39	2.2	38	78	10	93	32	0	6	60	1.23
47900981--47901023	21	2.0	21	86	0	59	25	11	9	53	1.67
47902757--47902810	21	2.5	21	81	3	63	61	1	1	35	1.18
47902786--47902825	16	2.5	16	91	0	62	47	2	7	42	1.45
47902792--47902956	68	2.6	65	86	8	207	41	4	9	44	1.57
47902814--47902956	68	2.1	67	92	2	243	41	5	9	44	1.60
47902898--47902925	9	3.1	9	100	0	56	32	0	10	57	1.33
47903022--47903065	24	1.9	24	90	9	74	61	2	0	36	1.09
47913447--47913514	30	2.3	30	92	0	109	48	4	5	41	1.47
47915330--47915394	30	2.2	30	83	5	78	23	32	0	44	1.53
47916291--47916337	20	2.5	19	75	6	51	55	2	2	40	1.24
47921624--47921675	22	2.3	21	78	15	52	55	3	3	36	1.36
47921745--47921797	24	2.2	23	78	15	54	52	1	0	45	1.11
47925391--47925445	17	3.1	17	76	21	51	58	3	0	38	1.16
47930303--47930411	52	2.1	52	98	0	209	22	13	10	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47936237--47936265	3	9.7	3	100	0	58	31	0	0	68	0.89
47936355--47936383	8	3.6	8	100	0	58	37	0	10	51	1.36
47936429--47936464	16	2.2	16	100	0	72	38	5	5	50	1.49
47940809--47940871	20	3.2	20	88	4	83	84	3	12	0	0.75
47940824--47940862	15	2.6	15	83	0	51	84	2	12	0	0.72
47940809--47940851	19	2.4	17	88	11	59	88	4	6	0	0.63
47940809--47940874	14	5.0	14	75	14	52	83	3	13	0	0.76
47940810--47940874	34	1.9	34	84	6	87	83	3	13	0	0.77
47941206--47941377	93	1.9	92	84	3	231	26	15	6	51	1.68
47942274--47943960	46	36.7	46	90	1	2224	25	16	27	30	1.97
47945503--47945531	8	3.6	8	100	0	58	37	0	10	51	1.36
47945577--47945612	16	2.2	16	100	0	72	38	5	5	50	1.49
47946226--47946351	64	2.0	64	96	0	234	31	15	15	37	1.89
47949380--47949475	28	3.2	29	74	22	101	47	2	7	42	1.42
47949368--47949497	60	2.2	60	91	0	206	44	3	9	43	1.51
47950019--47950060	18	2.3	18	84	8	50	50	2	0	47	1.14
47955652--47955700	25	2.0	25	100	0	98	59	4	4	32	1.35
47957242--47957465	104	2.2	104	93	1	378	17	19	31	31	1.95
47957384--47957535	71	2.1	72	92	1	252	23	17	29	30	1.97
47959376--47959625	126	2.0	126	95	0	455	28	17	15	39	1.90
47968675--47968740	32	2.1	32	100	0	132	21	12	34	31	1.90
47993454--47993698	123	2.0	123	98	0	472	28	17	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47998085--47998143	19	3.2	19	82	4	84	37	13	0	49	1.43
47998369--47998434	19	3.5	19	79	4	89	50	1	10	37	1.47
47998857--47998922	28	2.4	28	89	5	98	53	0	7	39	1.30
48001074--48001134	19	3.3	18	80	11	61	32	1	0	65	1.02
48003052--48003255	59	3.4	59	90	0	327	34	3	7	53	1.48
48003307--48003378	28	2.5	28	79	2	72	36	18	2	43	1.64
48005192--48005244	24	2.3	23	81	9	63	49	16	7	26	1.73
48010053--48010085	16	2.1	16	88	5	50	69	0	0	30	0.88
48010305--48010388	42	2.1	39	84	10	107	50	3	1	45	1.27
48010320--48010387	22	3.2	22	69	12	61	52	4	1	41	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313