Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  188  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57892941--57892990
21
2.4
21
83
6
66
26
0
50
24
1.50
57893024--57893291
75
3.5
76
92
3
432
33
8
11
45
1.72
57893211--57893392
93
2.0
90
91
3
292
30
13
12
43
1.81
57893391--57893574
77
2.4
76
94
1
323
31
11
14
42
1.81
57893467--57893908
228
1.9
230
92
2
746
29
12
14
43
1.82
57893467--57893916
116
3.9
116
91
3
741
29
12
15
43
1.83
57893811--57893970
68
2.2
69
85
8
205
27
10
15
47
1.77
57894871--57895052
89
2.0
89
81
4
206
44
25
3
26
1.69
57895045--57895109
7
9.3
7
76
6
60
35
38
0
26
1.57
57895058--57895109
14
3.7
14
89
0
68
34
38
0
26
1.57
57895131--57895160
15
2.1
15
93
6
53
33
33
0
33
1.58
57895539--57895738
41
4.9
41
87
0
274
30
22
20
27
1.98
57896062--57896421
107
3.3
107
93
3
585
36
8
6
48
1.61
57896400--57896436
15
2.5
15
100
0
74
43
0
5
51
1.24
57897105--57897141
15
2.5
15
95
0
65
43
0
2
54
1.14
57899090--57899147
19
3.1
19
82
0
80
51
20
24
3
1.62
57899122--57899197
25
3.0
25
80
3
82
47
22
21
9
1.78
57899976--57900015
18
2.2
18
86
8
55
32
0
7
60
1.25
57899974--57900016
19
2.3
18
84
4
59
32
0
6
60
1.23
57906604--57906637
17
2.0
17
94
0
59
44
14
5
35
1.70
57910003--57910044
22
1.9
22
90
0
66
16
14
50
19
1.79
57910674--57910712
20
2.0
20
85
10
53
30
2
35
30
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57911206--57911248
19
2.3
19
95
0
77
46
23
2
27
1.64
57915473--57915506
18
1.9
17
88
5
50
29
14
38
17
1.90
57915637--57915719
15
5.5
15
97
0
148
20
22
34
21
1.96
57916054--57916088
11
3.3
11
88
4
54
68
22
0
8
1.16
57917306--57917332
11
2.5
11
100
0
54
51
0
0
48
1.00
57919160--57919199
21
2.0
20
85
14
55
42
0
0
57
0.98
57920780--57920817
18
2.1
18
90
9
60
42
0
21
36
1.53
57927756--57927823
26
2.7
25
80
14
86
39
25
20
14
1.91
57928267--57928308
21
2.0
21
85
0
57
38
23
0
38
1.55
57928278--57928308
10
2.9
11
90
9
55
35
29
0
35
1.58
57930347--57930378
12
2.5
13
95
5
57
21
9
0
68
1.17
57930361--57930481
58
2.1
59
79
3
138
28
16
7
47
1.74
57932739--57932804
30
2.2
30
94
0
114
40
4
7
46
1.52
57935410--57935479
29
2.4
30
80
7
81
22
10
20
47
1.79
57935378--57935491
29
3.9
28
70
17
72
23
12
22
41
1.88
57935862--57935912
11
4.6
11
100
0
102
29
37
25
7
1.84
57943038--57943130
45
2.1
45
100
0
186
33
13
27
24
1.94
57945037--57945086
25
2.0
25
100
0
100
36
16
12
36
1.85
57946755--57947041
54
5.6
53
79
9
267
27
20
23
28
1.99
57946755--57947041
103
2.8
104
86
4
368
27
20
23
28
1.99
57947978--57948046
31
2.2
31
82
5
86
65
2
7
24
1.32
57950127--57950205
33
2.4
33
87
4
106
15
17
45
21
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57950587--57950624
13
2.8
13
84
15
51
28
5
0
65
1.14
57950588--57950630
14
3.1
14
83
3
52
27
4
0
67
1.10
57950840--57950873
10
3.3
10
92
8
59
17
8
0
73
1.08
57950839--57950873
11
3.3
11
92
8
63
17
8
0
74
1.06
57950844--57950917
5
13.8
5
71
18
51
21
20
0
58
1.40
57950926--57951027
20
5.0
21
68
19
63
26
11
0
61
1.30
57950926--57950989
20
3.1
20
76
14
67
28
7
0
64
1.21
57950924--57951061
46
3.1
43
76
11
129
26
11
0
61
1.35
57951013--57951092
26
3.0
27
68
12
76
25
11
1
62
1.36
57950926--57951055
22
6.1
20
66
18
57
25
12
0
61
1.36
57954019--57954510
50
9.9
50
76
9
363
23
22
19
33
1.97
57954199--57954320
54
2.3
53
82
4
138
25
20
15
38
1.92
57954019--57954505
48
9.8
49
75
9
294
23
22
19
33
1.97
57954280--57954455
95
1.8
98
80
7
216
23
22
19
34
1.97
57954030--57954497
252
1.9
249
82
7
588
24
23
19
32
1.97
57954393--57954621
116
2.0
115
86
3
316
21
25
18
34
1.96
57954442--57954579
68
2.0
68
83
8
174
23
24
15
36
1.93
57954442--57954572
67
2.0
67
80
8
151
23
24
15
36
1.93
57954512--57954622
48
2.3
49
79
1
116
23
24
17
35
1.95
57956025--57956069
22
2.0
22
82
0
54
42
0
2
55
1.12
57959413--57959860
225
2.0
225
96
0
833
31
16
25
26
1.96
57965282--57965338
29
1.9
30
92
3
98
47
3
7
42
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57965337--57965379
10
4.0
10
82
11
50
46
2
30
20
1.63
57965329--57965379
11
4.6
11
83
7
50
47
1
29
21
1.62
57965430--57965473
17
2.5
17
85
3
52
40
34
18
6
1.77
57967533--57967557
13
1.9
13
100
0
50
32
8
12
48
1.69
57969514--57969558
22
2.0
22
91
0
72
11
15
6
66
1.42
57971831--57972021
44
4.3
44
65
12
131
30
19
20
28
1.97
57971782--57972116
132
2.5
132
97
0
618
30
19
22
28
1.98
57972276--57972457
44
4.2
43
66
12
127
28
19
25
26
1.99
57972304--57972494
44
4.3
44
67
10
129
29
19
22
27
1.98
57972248--57972589
132
2.6
131
93
0
567
29
19
23
27
1.98
57971687--57972655
473
2.0
473
94
0
1715
28
20
23
27
1.99
57972598--57973037
89
5.0
89
93
0
702
30
18
24
26
1.98
57973725--57973768
17
2.5
17
85
3
52
40
34
18
6
1.77
57975023--57975056
16
2.1
16
88
0
50
41
2
11
44
1.56
57978390--57978458
20
3.3
19
76
13
57
46
2
2
47
1.32
57978690--57978739
13
3.8
13
79
10
57
40
16
4
40
1.67
57978690--57978739
26
1.9
26
87
0
73
40
16
4
40
1.67
57979572--57979627
22
2.5
23
72
16
55
60
1
1
35
1.17
57979694--57979747
24
2.2
24
78
12
65
44
0
1
53
1.11
57979849--57979886
20
1.9
20
88
0
58
50
5
0
44
1.24
57980115--57980149
18
1.9
18
94
0
61
31
11
20
37
1.88
57980200--57980254
9
6.1
9
95
0
92
45
14
10
29
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57986235--57986539
154
2.0
154
99
0
601
46
14
11
27
1.79
57989066--57989204
42
3.2
43
79
7
140
31
24
17
26
1.97
57993418--57993469
26
2.0
26
88
7
79
40
26
21
11
1.87
57993648--57993946
27
11.1
27
84
2
318
23
20
16
39
1.92
57993648--57993936
81
3.6
81
85
4
377
23
20
16
39
1.92
57999341--57999436
42
2.3
43
78
10
117
30
22
21
25
1.99
58006242--58006278
14
2.9
13
85
14
51
72
0
27
0
0.84
58006219--58006279
25
2.4
25
81
8
61
68
4
24
1
1.18
58006242--58006279
13
2.9
14
88
11
55
73
0
26
0
0.83
58010503--58010633
69
1.9
71
85
3
185
23
7
25
42
1.80
58011743--58011860
33
3.6
33
77
11
125
40
15
9
34
1.79
58014979--58015013
18
2.0
17
88
5
52
45
0
0
54
0.99
58014887--58015270
120
3.2
120
95
1
716
43
2
5
48
1.38
58015099--58015133
18
2.0
17
88
5
52
45
0
0
54
0.99
58015219--58015253
18
2.0
17
88
5
52
45
0
0
54
0.99
58015489--58015524
16
2.2
16
100
0
72
38
36
0
25
1.56
58025122--58025248
41
3.1
41
97
0
236
45
17
10
26
1.80
58033622--58033662
21
2.0
21
85
0
55
53
14
9
21
1.70
58033845--58033884
14
2.8
14
88
3
53
75
7
17
0
1.03
58038153--58038320
41
4.1
41
92
0
291
26
10
18
45
1.81
58041082--58041117
16
2.2
16
90
5
54
30
13
19
36
1.91
58044066--58044138
31
2.4
31
85
0
92
38
15
30
16
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58048184--58048438
124
2.1
124
88
3
379
30
16
21
31
1.95
58052333--58053192
440
2.0
439
95
0
1562
19
23
29
26
1.98
58054804--58054837
15
2.3
15
90
5
52
67
5
0
26
1.13
58054936--58054993
29
2.0
30
89
3
91
58
1
1
37
1.18
58055035--58055076
22
1.9
22
90
0
66
33
0
33
33
1.58
58055026--58055128
52
2.0
51
83
9
129
36
0
31
32
1.58
58055078--58055169
22
4.2
22
77
15
109
42
0
27
30
1.56
58055078--58055169
44
2.1
44
86
8
125
42
0
27
30
1.56
58061260--58061304
23
2.0
24
91
8
76
60
22
0
17
1.37
58061621--58061674
19
2.8
19
80
0
63
35
0
3
61
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313