genome.fa.s26.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  126  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40659915--40659962	23	2.1	23	100	0	96	37	20	8	33	1.83
40667126--40667155	16	1.9	16	93	6	53	50	3	6	40	1.45
40669925--40669996	11	6.8	11	80	12	53	37	4	0	58	1.18
40669917--40670020	40	2.6	40	85	1	163	34	3	0	61	1.14
40669957--40670038	30	2.7	30	77	21	98	30	2	0	67	1.04
40669958--40670042	29	2.9	29	84	11	111	34	2	0	63	1.07
40669917--40670021	41	2.6	42	84	6	162	34	3	0	61	1.14
40674157--40674249	39	2.5	37	80	7	98	27	29	22	20	1.98
40675300--40675325	11	2.4	11	100	0	52	0	42	7	50	1.31
40675683--40675725	21	2.0	21	81	0	50	58	6	0	34	1.25
40680754--40680796	21	2.0	21	82	8	52	23	20	4	51	1.66
40690623--40690656	17	2.1	16	88	5	50	2	14	5	76	1.09
40690645--40690695	14	3.6	14	76	7	50	17	13	0	68	1.21
40690845--40690881	14	2.4	17	86	13	53	51	0	0	48	1.00
40694096--40694152	30	1.9	30	85	0	78	36	5	0	57	1.21
40696366--40696411	15	2.9	16	72	21	51	69	0	2	28	1.00
40700552--40700729	93	1.9	93	82	4	225	29	12	11	45	1.78
40701083--40701107	12	2.1	12	100	0	50	40	8	16	36	1.77
40711959--40712008	20	2.5	22	87	12	72	38	4	8	50	1.51
40712052--40712093	14	2.9	14	83	16	59	38	7	0	54	1.28
40712228--40712295	23	3.0	23	82	4	75	47	2	1	48	1.26
40712501--40712565	33	1.9	34	84	9	89	47	3	3	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40719646--40719670	11	2.3	11	100	0	50	56	12	8	24	1.62
40726125--40726169	24	1.9	23	86	4	63	40	0	2	57	1.11
40733523--40733567	23	2.0	23	86	0	63	48	4	0	46	1.22
40740522--40740558	19	1.9	19	100	0	74	64	5	0	29	1.15
40745412--40745471	30	2.0	30	83	3	77	33	1	3	61	1.22
40745342--40745467	9	13.8	9	68	18	55	36	0	4	57	1.25
40746290--40746343	22	2.3	23	78	6	56	74	1	0	24	0.92
40746317--40746441	59	2.1	59	85	5	164	62	1	3	32	1.21
40746448--40746476	6	4.8	6	100	0	58	51	13	0	34	1.42
40750722--40750756	18	2.0	17	88	5	52	31	11	37	20	1.88
40755266--40755324	31	1.9	31	85	0	82	32	15	23	28	1.95
40763139--40763164	12	2.2	12	100	0	52	53	0	0	46	1.00
40765515--40765539	13	1.9	13	100	0	50	8	4	0	88	0.64
40765547--40765583	19	1.9	19	88	0	56	37	0	0	62	0.96
40765548--40765590	20	2.2	19	83	4	50	37	0	2	60	1.10
40771235--40771294	29	2.0	30	84	9	79	35	1	3	60	1.23
40772584--40772641	30	1.9	30	89	0	89	41	3	24	31	1.71
40772762--40772813	27	1.9	27	92	0	86	21	19	30	28	1.97
40774197--40774226	9	3.3	9	95	0	51	20	0	70	10	1.16
40775745--40775879	33	3.7	34	70	26	116	28	25	21	23	1.99
40775747--40775959	76	2.8	77	92	1	347	30	26	20	23	1.99
40775903--40776058	33	4.6	32	67	24	97	33	27	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40775935--40775986	27	1.9	27	92	7	88	25	30	23	21	1.99
40775859--40776063	103	2.0	103	95	0	365	32	27	20	20	1.97
40778263--40778301	20	2.0	20	85	10	53	41	12	2	43	1.56
40779261--40779323	18	3.2	19	80	19	67	58	0	0	41	0.98
40779275--40779323	18	2.5	20	84	15	68	57	0	0	42	0.99
40784947--40785009	23	2.7	24	74	16	69	39	1	0	58	1.07
40785016--40785076	17	3.7	17	78	6	63	45	1	1	50	1.21
40795904--40795975	31	2.3	31	87	0	108	43	9	5	41	1.61
40803332--40803641	152	2.0	152	99	0	611	27	23	16	32	1.96
40803820--40803846	7	3.9	7	100	0	54	70	0	0	29	0.88
40804883--40804922	21	2.0	20	85	5	53	47	2	0	50	1.14
40805599--40805645	24	2.0	24	82	0	58	53	25	14	6	1.65
40817031--40817078	23	2.1	23	100	0	96	39	20	12	27	1.89
40819110--40819689	201	2.9	193	83	8	672	34	19	13	32	1.91
40821135--40821165	9	3.6	9	95	4	55	38	0	0	61	0.96
40822766--40822821	29	1.9	29	82	7	69	32	17	14	35	1.90
40823729--40823790	30	2.1	29	84	3	79	45	17	12	24	1.84
40831804--40831844	17	2.4	17	87	0	55	31	9	14	43	1.78
40837069--40837093	12	2.1	12	100	0	50	32	8	8	52	1.60
40842209--40842245	11	3.5	11	78	14	51	72	0	0	27	0.84
40842209--40842252	17	2.4	19	88	11	65	72	0	0	27	0.85
40842209--40842253	20	2.2	20	88	7	65	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40844744--40844786	20	2.0	22	86	8	63	13	11	4	69	1.33
40867914--40867961	24	2.0	24	95	0	87	37	14	12	35	1.84
40868430--40868481	18	2.9	18	73	0	50	28	51	7	11	1.65
40868513--40868563	6	8.7	6	78	4	50	43	39	11	5	1.66
40872199--40872248	26	1.9	26	83	0	64	60	4	2	34	1.27
40882105--40882131	14	1.9	14	100	0	54	33	0	7	59	1.25
40883757--40883910	42	3.7	43	81	3	136	17	19	18	44	1.87
40883825--40883896	21	3.4	21	69	7	56	18	19	16	45	1.85
40883852--40883903	21	2.5	21	77	0	59	17	23	15	44	1.86
40888483--40888687	109	1.9	107	85	4	286	37	7	17	37	1.79
40888588--40889444	150	5.7	150	91	1	1254	37	7	16	38	1.77
40888590--40889444	301	2.8	300	89	2	1254	37	7	16	38	1.77
40896100--40896171	31	2.3	31	100	0	144	15	13	16	54	1.72
40917345--40917385	18	2.4	18	88	8	59	17	4	7	70	1.28
40921137--40921186	21	2.4	21	80	6	57	56	4	2	38	1.30
40921151--40921194	21	2.1	21	84	12	56	59	2	2	36	1.23
40923910--40923955	23	2.0	23	91	0	74	56	4	4	34	1.39
40924057--40924095	20	2.0	20	84	0	51	48	0	5	46	1.24
40927386--40927457	28	2.5	30	86	6	105	43	8	0	48	1.33
40927575--40927718	4	35.0	4	75	20	79	68	0	31	0	0.90
40927574--40927732	14	11.5	13	71	20	94	67	0	32	0	0.91
40927618--40927752	6	22.0	6	69	15	62	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40927574--40927727	5	32.6	5	70	18	59	67	0	32	0	0.91
40927585--40927763	49	3.9	47	67	23	62	67	0	32	0	0.91
40927614--40927784	80	2.2	80	89	7	260	69	0	30	0	0.89
40927691--40927784	46	2.1	46	80	13	106	71	0	28	0	0.87
40928511--40928566	27	2.1	27	93	0	94	44	14	32	8	1.76
40933467--40933511	18	2.5	18	85	0	63	17	44	6	31	1.75
40934321--40934357	3	12.3	3	100	0	74	67	0	0	32	0.91
40934409--40934447	20	2.0	21	85	10	55	66	15	0	17	1.25
40939058--40939094	17	2.2	17	90	0	56	27	13	16	43	1.85
40939054--40939100	17	2.5	19	76	16	53	29	12	17	40	1.86
40941279--40941325	22	2.2	20	81	7	58	63	2	0	34	1.06
40945246--40945310	34	1.9	34	84	12	89	66	1	9	23	1.29
40950514--40950561	19	2.5	20	86	6	64	45	4	10	39	1.58
40950523--40950561	20	2.0	20	90	5	62	48	2	7	41	1.45
40951541--40951680	40	3.5	40	80	6	169	26	18	24	30	1.98
40952506--40952536	15	2.1	15	100	0	62	61	0	19	19	1.35
40954812--40954856	20	2.2	20	84	0	54	28	4	24	42	1.74
40958547--40958595	22	2.2	22	77	0	53	61	8	10	20	1.53
40970714--40970767	26	2.1	26	100	0	108	44	11	22	22	1.84
40975725--40975793	34	2.1	33	91	2	111	13	10	14	62	1.55
40976205--40976301	48	2.0	48	97	0	185	23	16	18	41	1.90
40977605--40977645	20	2.1	19	86	13	57	7	21	14	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998020--40998055	17	2.1	17	100	0	72	47	19	5	27	1.72
41013296--41013342	3	15.7	3	95	0	85	31	2	0	65	1.04
41015913--41015950	3	12.7	3	100	0	76	68	0	31	0	0.90
41016252--41016298	21	2.2	22	84	3	60	55	2	0	42	1.12
41021944--41022004	27	2.3	27	100	0	122	54	18	3	24	1.58
41025011--41025062	24	2.2	24	85	0	68	38	3	7	50	1.50
41029443--41029494	24	2.2	24	89	0	77	36	3	9	50	1.54
41047124--41047254	46	2.8	46	92	0	217	35	6	25	31	1.83
41053414--41053439	2	13.0	2	100	0	52	0	50	0	50	1.00
41060319--41060362	21	2.3	18	84	11	52	68	2	2	27	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313