genome.fa.s26.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  145  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46468671--46468882	74	2.8	76	77	7	171	34	20	21	23	1.97
46468714--46468882	40	4.4	40	77	10	172	36	19	21	23	1.95
46471778--46471979	27	7.6	27	75	7	171	35	17	21	25	1.95
46471819--46471980	81	2.0	81	87	2	236	32	16	22	27	1.96
46471805--46471993	27	7.1	27	78	2	177	33	16	22	26	1.95
46472019--46472100	24	3.5	24	77	8	78	18	9	24	47	1.78
46472268--46472505	32	7.5	32	77	6	146	21	20	21	36	1.95
46486450--46486474	3	8.3	3	100	0	50	68	0	0	32	0.90
46486953--46486999	21	2.2	21	96	0	85	72	12	8	6	1.27
46486960--46487006	21	2.2	21	92	0	76	68	21	6	4	1.30
46489424--46489469	23	2.0	22	84	12	58	47	21	0	30	1.51
46494248--46494298	18	2.8	18	81	0	66	41	1	17	39	1.61
46497587--46498021	27	16.2	27	75	5	310	41	18	15	24	1.89
46497960--46498037	27	2.9	27	84	3	86	38	24	16	20	1.93
46498226--46498294	26	2.7	26	86	0	102	10	24	28	36	1.88
46498406--46498520	30	3.9	30	82	2	135	22	25	22	29	1.99
46507043--46507074	15	2.0	17	88	11	50	43	0	6	50	1.27
46507836--46507881	14	3.4	14	82	17	62	76	0	23	0	0.79
46507833--46507881	22	2.2	23	88	3	73	75	0	24	0	0.80
46510158--46510251	49	1.9	49	93	0	161	43	8	24	23	1.81
46510972--46511006	13	2.5	14	90	9	54	42	2	0	54	1.15
46511341--46511365	13	1.9	13	100	0	50	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46512740--46512775	10	3.5	10	88	3	54	36	41	2	19	1.66
46517516--46517559	3	14.7	3	100	0	88	31	0	0	68	0.90
46517751--46517779	12	2.4	12	100	0	58	41	10	0	48	1.37
46528170--46528551	45	8.6	45	71	2	209	31	19	23	26	1.98
46528251--46528517	88	3.0	88	89	2	383	31	19	23	25	1.98
46528251--46528547	89	3.3	89	86	1	382	31	19	23	25	1.98
46528999--46529138	44	3.2	44	69	11	124	32	20	22	25	1.98
46529462--46529486	7	3.6	7	100	0	50	88	12	0	0	0.53
46530466--46530506	3	13.7	3	100	0	82	31	0	0	68	0.90
46531759--46531823	20	3.5	20	67	16	57	32	4	1	61	1.26
46531806--46531835	15	1.9	16	93	6	53	40	0	6	53	1.27
46532638--46532697	21	3.0	20	80	7	59	33	6	5	55	1.48
46535069--46535105	15	2.5	15	86	0	56	13	37	0	48	1.43
46536378--46536724	72	4.7	72	77	5	284	36	11	24	26	1.90
46538450--46538518	27	2.6	27	76	4	86	20	21	36	21	1.95
46538575--46538623	18	2.6	18	87	9	62	71	2	24	2	1.07
46541578--46541644	27	2.4	27	92	2	116	53	8	0	37	1.32
46543709--46543789	37	2.2	38	97	2	155	40	2	2	54	1.27
46543823--46543944	60	2.0	60	85	6	167	54	13	0	31	1.45
46543967--46544055	21	4.0	21	64	24	56	52	12	1	33	1.46
46543932--46544056	48	2.5	48	87	3	187	54	12	0	32	1.43
46544096--46544159	19	3.2	19	85	12	92	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46544091--46544157	22	3.2	22	83	12	95	59	11	0	28	1.33
46544226--46544251	12	2.2	12	100	0	52	46	15	0	38	1.46
46544325--46544357	3	11.3	3	87	6	50	0	36	0	63	0.95
46544329--46544365	14	2.6	14	91	0	56	0	40	0	59	0.97
46544321--46544357	17	2.2	16	90	4	56	0	35	0	64	0.94
46545941--46545970	3	10.0	3	92	0	51	3	30	33	33	1.74
46550402--46550463	16	3.8	17	76	4	56	37	8	6	48	1.59
46550683--46550744	13	4.8	13	76	4	63	41	8	12	37	1.73
46552601--46552649	24	2.0	24	92	0	80	42	28	4	24	1.73
46560113--46560166	23	2.6	19	83	16	63	64	0	5	29	1.16
46560129--46560163	15	2.3	15	90	9	54	65	0	5	28	1.15
46560046--46560263	104	2.1	104	100	0	436	59	1	9	29	1.39
46560050--46560191	32	4.2	32	64	28	87	61	2	8	28	1.37
46560233--46560262	14	2.1	15	93	6	53	66	0	6	26	1.16
46560241--46560308	28	2.4	29	80	14	79	66	2	10	20	1.35
46560355--46560401	18	2.5	20	86	13	64	70	0	6	23	1.10
46560358--46560433	14	5.7	13	72	21	59	69	1	7	21	1.21
46560357--46560421	4	15.8	4	79	7	51	70	1	6	21	1.17
46562313--46562808	44	10.9	44	72	10	275	28	21	17	32	1.96
46562314--46562480	45	3.7	45	80	5	187	29	23	15	30	1.96
46562307--46562808	89	5.5	88	71	11	251	28	21	17	33	1.96
46565488--46565824	84	4.0	84	98	0	647	24	28	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46567513--46567550	15	2.5	15	95	0	67	5	34	5	55	1.45
46568693--46568788	31	3.1	31	95	3	174	45	13	9	31	1.75
46573313--46573354	12	3.5	12	90	0	66	0	11	11	76	1.03
46573329--46573428	41	2.4	41	90	5	148	3	17	11	69	1.31
46573370--46573461	9	9.7	9	73	23	66	2	14	13	70	1.26
46573411--46573446	8	4.4	8	89	3	54	0	11	16	72	1.12
46574003--46574098	31	3.1	31	95	3	174	45	13	9	31	1.75
46575127--46575161	3	11.7	3	100	0	70	68	0	31	0	0.90
46575221--46575269	23	2.3	21	80	20	57	65	0	6	28	1.16
46575237--46575271	15	2.3	15	90	9	54	65	0	5	28	1.15
46575237--46575340	26	4.1	25	75	15	90	64	1	10	23	1.35
46575335--46575482	4	36.5	4	70	6	84	66	3	7	22	1.33
46576029--46576088	24	2.5	24	94	2	102	41	5	0	53	1.23
46584453--46584494	22	1.9	22	85	0	57	54	4	9	30	1.53
46586569--46586615	19	2.5	19	83	16	62	42	0	2	55	1.12
46586568--46586608	18	2.3	18	80	12	50	41	0	2	56	1.13
46590982--46591024	13	3.4	13	78	18	54	65	2	0	32	1.06
46590983--46591026	12	3.6	12	82	14	54	61	2	0	36	1.09
46602734--46602797	29	2.2	30	77	8	78	57	9	4	28	1.50
46603968--46604010	21	2.0	22	86	13	63	32	13	0	53	1.41
46604959--46604988	16	1.9	16	93	6	53	30	10	0	60	1.30
46616553--46616605	26	2.0	26	92	0	88	32	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46616651--46616775	62	2.0	62	95	0	223	41	9	7	41	1.65
46616989--46617164	93	1.9	93	85	2	246	39	12	18	29	1.88
46618700--46618759	31	1.9	32	83	16	81	38	0	0	61	0.96
46622567--46622609	21	2.0	22	86	4	61	41	34	6	16	1.75
46630110--46630140	16	1.9	16	93	0	53	61	0	3	35	1.12
46646166--46646234	31	2.3	31	85	7	88	44	20	8	26	1.80
46646750--46646775	7	3.7	7	100	0	52	88	0	11	0	0.52
46648697--46648753	13	4.4	12	74	20	53	50	0	5	43	1.24
46648718--46648770	12	4.5	11	81	11	52	52	1	3	41	1.30
46661856--46661922	34	1.9	35	84	3	91	46	11	10	31	1.75
46661891--46661930	14	2.9	14	84	0	53	42	17	7	32	1.77
46662618--46662924	92	3.3	92	97	0	560	38	10	11	40	1.74
46664050--46664168	60	1.9	62	88	5	179	35	11	21	31	1.90
46664282--46664325	9	5.1	9	89	10	74	56	11	0	31	1.35
46664291--46664328	16	2.4	16	95	0	67	55	10	0	34	1.34
46664366--46664409	9	5.1	9	89	10	74	56	11	0	31	1.35
46664375--46664412	16	2.4	16	95	0	67	55	10	0	34	1.34
46664255--46664562	84	3.7	84	98	0	593	47	9	4	38	1.58
46664450--46664493	9	5.1	9	89	10	74	56	11	0	31	1.35
46664459--46664496	16	2.4	16	95	0	67	55	10	0	34	1.34
46664566--46664615	23	2.2	23	85	3	66	42	6	2	50	1.38
46664475--46664608	66	2.0	68	81	11	161	47	7	4	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46665831--46665911	31	2.6	31	82	9	103	44	9	4	40	1.59
46672909--46672958	15	3.3	15	78	10	57	26	6	8	60	1.48
46674571--46674622	11	4.7	11	97	0	95	40	9	1	48	1.47
46677648--46677716	27	2.6	27	83	4	95	18	21	36	23	1.95
46677823--46678136	161	2.0	161	96	0	583	31	4	13	50	1.63
46680912--46680955	16	2.8	15	83	10	61	59	2	2	36	1.23
46681226--46681293	22	2.9	22	84	10	82	55	13	0	30	1.38
46681337--46681397	19	3.2	19	83	4	86	54	13	1	31	1.49
46681330--46681396	20	3.3	20	81	6	82	56	11	1	29	1.44
46681570--46681601	14	2.3	15	84	15	50	0	31	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313