genome.fa.s26.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  179  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55576497--55576694	102	2.0	101	86	7	276	29	19	17	33	1.94
55576599--55576916	111	2.8	110	83	5	363	29	19	18	32	1.96
55587483--55587558	31	2.4	31	77	16	77	55	6	1	36	1.34
55587546--55587619	19	3.9	19	75	19	59	59	4	0	36	1.16
55587606--55587633	7	4.0	7	100	0	56	71	0	0	28	0.86
55588135--55588275	67	2.1	67	93	2	239	36	7	3	52	1.46
55591123--55591497	184	2.0	185	98	1	725	34	20	12	32	1.90
55599746--55599807	14	4.5	13	84	8	61	12	9	3	74	1.19
55601250--55601296	23	2.0	23	100	0	94	29	21	4	44	1.71
55603869--55603916	19	2.6	18	80	6	51	25	0	6	68	1.12
55603966--55604016	25	2.0	25	84	3	66	27	0	7	64	1.21
55615188--55615275	45	2.0	45	97	0	167	25	20	11	43	1.85
55615602--55615644	17	2.5	17	76	0	50	79	0	11	9	0.95
55615708--55615748	19	2.2	19	86	0	55	73	2	17	7	1.17
55621624--55621684	25	2.4	25	83	0	77	37	6	16	39	1.75
55624381--55624444	26	2.5	26	94	2	112	37	7	17	37	1.79
55630330--55630484	73	2.1	73	83	2	186	32	21	26	19	1.97
55630390--55630536	48	2.9	51	78	13	155	34	21	23	19	1.96
55630390--55630532	25	5.7	26	73	10	102	35	21	23	18	1.96
55632404--55632477	30	2.6	29	76	4	69	62	2	0	35	1.10
55632422--55632480	10	6.0	10	78	13	61	64	1	0	33	1.04
55632428--55632479	28	1.9	26	85	14	70	63	1	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55633798--55634045	43	5.8	43	89	0	361	27	30	18	23	1.98
55640397--55640590	41	4.9	40	76	13	197	28	28	22	20	1.98
55640631--55640760	40	3.3	39	80	7	138	22	22	21	33	1.97
55641488--55641518	9	3.4	9	90	0	53	25	9	22	41	1.84
55642955--55643063	43	2.6	43	83	1	130	31	26	15	26	1.96
55649898--55649923	5	5.2	5	100	0	52	42	19	19	19	1.90
55650403--55650450	19	2.6	19	78	18	57	60	0	2	37	1.09
55650946--55650982	9	4.1	9	92	0	65	29	10	13	45	1.77
55656255--55656295	12	3.3	12	89	3	55	17	24	0	58	1.38
55656254--55656295	18	2.3	19	87	4	59	16	23	0	59	1.37
55660978--55661212	43	5.5	43	87	2	294	32	19	22	25	1.97
55660993--55661210	42	5.1	42	88	0	283	33	18	21	26	1.97
55660978--55661276	85	3.5	86	80	5	306	33	19	21	25	1.97
55661718--55661758	21	2.0	21	95	0	73	2	34	21	41	1.67
55664520--55664571	27	1.9	27	84	0	68	48	9	0	42	1.36
55664637--55664665	10	2.9	10	100	0	58	41	17	0	41	1.49
55666399--55666466	14	4.9	14	74	16	61	41	32	0	26	1.56
55666949--55667188	41	5.9	40	76	3	210	34	21	25	19	1.96
55666965--55667187	82	2.7	82	87	1	295	35	21	25	18	1.95
55666949--55667175	123	1.8	123	81	3	278	34	21	25	18	1.96
55672408--55672469	19	3.2	19	75	11	63	54	1	0	43	1.09
55681399--55681475	33	2.3	33	82	6	93	32	18	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55681472--55681498	11	2.5	11	100	0	54	18	29	40	11	1.85
55687378--55687491	19	6.0	19	85	0	120	29	30	24	14	1.95
55687378--55687491	38	3.0	38	85	0	138	29	30	24	14	1.95
55691302--55691354	13	4.1	13	78	9	63	28	5	28	37	1.80
55691857--55691885	13	2.1	14	93	6	51	41	6	17	34	1.76
55692173--55692212	19	2.1	19	86	9	55	45	0	0	55	0.99
55692173--55692215	20	2.2	20	88	12	63	46	0	0	53	1.00
55692669--55692717	21	2.3	22	92	7	91	28	0	12	59	1.34
55692710--55692806	33	3.1	32	68	27	91	35	0	11	53	1.37
55692705--55692826	60	2.0	60	92	3	201	32	0	13	54	1.39
55692940--55692977	15	2.4	16	91	8	69	36	0	5	57	1.21
55692944--55692979	15	2.4	15	100	0	72	36	0	5	58	1.22
55694526--55694580	6	9.2	6	83	0	65	32	29	36	1	1.68
55694532--55694580	18	2.7	18	90	0	80	30	28	38	2	1.68
55698113--55698181	27	2.6	27	72	4	68	26	33	18	21	1.97
55698232--55698272	22	1.9	22	90	5	66	51	0	0	48	1.00
55698705--55698744	20	2.0	21	90	5	64	35	0	2	62	1.09
55698705--55698744	21	2.0	20	85	5	53	35	0	2	62	1.09
55701628--55702106	161	3.0	161	91	1	775	39	20	13	26	1.90
55705187--55705301	43	2.7	41	81	7	140	30	28	18	22	1.97
55710263--55710557	98	3.0	98	96	0	536	26	10	26	36	1.89
55716292--55716944	132	4.9	132	91	0	1056	30	20	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55716292--55716849	44	12.7	44	62	15	152	30	20	25	24	1.98
55716931--55717562	44	14.6	43	72	13	356	28	20	22	27	1.99
55716922--55717581	217	3.0	217	93	0	1095	29	20	23	27	1.99
55717103--55717428	173	1.9	173	80	7	385	27	20	23	27	1.99
55719419--55719480	7	8.7	7	75	10	54	38	38	3	19	1.68
55719490--55719550	7	8.6	7	80	3	59	50	26	1	21	1.58
55719452--55719551	36	2.8	36	76	10	98	43	34	2	21	1.64
55719561--55719606	14	3.4	14	75	6	58	43	36	0	19	1.51
55719710--55719841	19	6.8	19	90	3	201	37	9	14	37	1.79
55719710--55719848	59	2.4	57	87	6	201	38	9	14	38	1.78
55719711--55719864	59	2.6	57	87	6	184	37	9	13	39	1.77
55720174--55720210	7	5.4	7	93	6	67	13	0	0	86	0.57
55720612--55720661	25	2.0	26	92	4	84	30	8	4	58	1.45
55721336--55721530	98	2.0	98	95	0	354	27	10	25	36	1.89
55725990--55726014	10	2.5	10	100	0	50	92	8	0	0	0.40
55727376--55727552	44	4.0	44	62	11	101	30	19	23	25	1.98
55727271--55727659	132	2.9	132	89	0	609	30	20	24	23	1.98
55727646--55728200	44	12.8	44	70	14	296	29	20	22	27	1.98
55727637--55728296	217	3.0	217	95	0	1122	29	20	22	27	1.98
55727818--55728146	173	1.9	173	82	8	411	28	20	23	27	1.99
55727774--55728291	44	11.9	43	72	13	287	29	19	23	27	1.98
55728462--55728574	19	5.8	19	88	4	172	38	10	14	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55728463--55728574	59	1.9	59	92	0	188	38	10	13	37	1.79
55728462--55728581	40	3.2	38	87	6	172	38	10	14	37	1.79
55728886--55728915	7	4.4	7	91	8	53	13	0	0	86	0.57
55728887--55728915	13	2.2	13	100	0	58	13	0	0	86	0.58
55730002--55730198	98	2.0	98	94	0	349	27	10	24	37	1.88
55731097--55731211	41	2.8	42	85	2	144	33	26	20	20	1.97
55731268--55731384	40	3.0	38	75	7	117	24	21	17	35	1.95
55733238--55733282	19	2.4	19	96	3	83	28	15	8	46	1.76
55733924--55733956	6	5.5	6	100	0	66	33	18	15	33	1.92
55743786--55743920	54	2.5	54	86	0	189	33	18	23	24	1.97
55745782--55745835	21	2.6	21	82	11	74	51	22	1	24	1.57
55753255--55753336	36	2.2	37	84	2	103	40	30	12	17	1.86
55759466--55759505	17	2.4	17	87	4	55	55	0	7	37	1.29
55760299--55760389	30	3.0	31	71	9	78	25	19	7	47	1.76
55760321--55760378	31	1.9	30	85	3	80	25	20	10	43	1.84
55766242--55766381	46	3.0	46	88	2	210	34	7	27	30	1.85
55769293--55769324	7	4.4	7	96	4	55	28	0	12	59	1.34
55769550--55769707	69	2.3	69	85	2	210	27	18	23	31	1.97
55769658--55769757	52	1.9	52	87	0	146	25	20	23	32	1.98
55769731--55769999	69	3.9	69	81	0	304	27	19	21	32	1.97
55771898--55772065	88	1.9	88	80	0	192	18	28	25	27	1.98
55773896--55773949	21	2.6	21	87	0	81	24	9	37	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55774214--55774265	22	2.3	22	77	9	52	50	5	1	42	1.37
55777518--55777664	64	2.3	64	97	0	285	36	8	13	41	1.76
55778297--55778328	15	2.1	15	94	0	55	53	0	15	31	1.43
55778312--55779056	379	2.0	379	99	0	1481	24	16	17	41	1.89
55781354--55781397	21	2.1	21	100	0	88	9	15	31	43	1.79
55789167--55789224	30	2.0	28	86	6	80	50	0	1	48	1.11
55798058--55798107	26	1.9	26	92	8	84	16	20	22	42	1.89
55798076--55798213	73	1.9	73	81	3	170	21	20	21	36	1.95
55798060--55798226	73	2.3	73	74	14	162	19	20	21	38	1.94
55798222--55798285	25	2.6	25	77	5	58	25	26	17	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313