genome.fa.s26.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  153  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48517588--48517741	83	1.9	83	94	0	272	29	5	16	48	1.70
48517686--48517943	9	30.8	9	67	20	123	32	3	20	43	1.70
48517671--48517833	66	2.5	66	86	0	209	29	4	20	45	1.70
48517752--48517946	25	7.8	25	74	12	139	32	2	20	44	1.65
48517715--48517833	41	2.9	41	81	7	109	29	3	22	44	1.69
48517959--48518144	30	6.1	30	72	12	162	43	2	11	43	1.52
48518135--48518300	66	2.5	66	100	0	332	38	3	10	47	1.54
48520773--48520810	20	1.9	20	94	0	67	57	7	0	34	1.28
48521017--48521046	15	2.0	15	93	0	51	33	3	0	63	1.11
48521181--48521223	22	2.0	21	90	4	68	51	30	2	16	1.57
48524264--48524303	20	2.0	20	86	13	57	27	0	7	65	1.20
48532015--48532094	39	2.1	39	100	0	160	28	12	35	23	1.91
48532687--48532735	24	2.0	24	96	0	89	18	12	26	42	1.85
48533863--48533888	8	3.2	8	100	0	52	61	26	0	11	1.30
48533888--48534336	130	3.5	129	83	6	586	37	14	17	30	1.90
48537958--48538024	33	2.1	31	83	10	82	29	20	23	25	1.99
48553568--48553607	21	2.0	21	85	5	55	22	35	25	17	1.95
48558472--48558526	27	2.0	27	92	0	92	29	10	7	52	1.63
48561644--48561702	32	1.9	32	86	6	86	64	5	0	30	1.15
48562950--48562997	21	2.3	21	81	0	60	2	39	18	39	1.63
48565675--48565828	26	5.8	26	77	11	136	25	16	20	37	1.93
48572726--48572821	28	3.2	28	74	11	84	29	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48573148--48573284	26	5.2	26	86	2	159	27	16	17	38	1.91
48574133--48574184	21	2.4	22	76	20	56	65	15	13	5	1.44
48575984--48576133	77	1.9	77	98	0	291	25	16	16	42	1.88
48577070--48577196	34	3.7	34	85	2	157	41	13	10	34	1.78
48578207--48578240	16	2.1	15	89	10	50	79	0	11	8	0.94
48580116--48580173	19	3.1	18	82	5	62	25	0	5	68	1.10
48580129--48580181	18	3.0	17	74	17	54	20	0	7	71	1.10
48580958--48581008	22	2.6	19	77	19	59	68	3	0	27	1.07
48580956--48581008	20	2.7	20	81	16	65	67	3	0	28	1.07
48580965--48581008	22	2.1	20	91	8	70	68	4	0	27	1.09
48581185--48581263	9	9.1	9	68	18	51	40	1	1	56	1.15
48581186--48581235	9	5.2	10	77	13	52	36	2	0	62	1.07
48581183--48581263	30	2.7	30	79	11	85	39	1	1	58	1.14
48592277--48592305	9	3.0	10	90	10	51	10	37	0	51	1.36
48598214--48598981	44	17.0	43	70	8	282	33	16	19	29	1.94
48598209--48598397	89	2.1	89	80	1	209	34	16	19	29	1.94
48598446--48598689	133	1.8	133	83	1	328	30	17	22	29	1.96
48598621--48598747	45	2.8	45	75	7	116	35	14	20	29	1.93
48598490--48598786	89	3.3	90	75	10	263	31	17	21	29	1.96
48598663--48598937	140	2.0	140	87	2	401	36	16	17	29	1.92
48599699--48599780	43	1.9	42	82	2	101	29	13	1	56	1.45
48600393--48600464	3	24.0	3	88	0	108	33	5	0	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48602875--48602939	21	3.2	20	72	12	62	12	23	23	41	1.87
48602857--48602996	39	3.6	39	88	0	190	12	23	24	39	1.90
48603689--48603722	13	2.5	13	95	4	59	76	0	0	23	0.79
48609820--48609878	28	2.1	28	100	0	118	54	6	23	15	1.65
48610158--48610208	20	2.5	20	83	3	57	21	21	15	41	1.90
48610237--48610360	39	3.2	39	87	0	176	14	22	24	38	1.91
48611053--48611087	13	2.6	13	95	4	61	82	0	0	17	0.66
48617326--48617358	17	1.9	17	93	0	57	27	0	18	54	1.44
48620806--48621081	46	6.0	46	90	2	358	21	24	15	38	1.92
48625976--48626186	26	8.2	26	93	1	370	34	25	8	32	1.85
48626771--48626813	22	2.0	22	100	0	86	32	18	23	25	1.97
48630649--48630673	12	2.1	12	100	0	50	16	52	24	8	1.70
48633817--48634027	26	8.1	26	87	0	314	34	24	9	32	1.86
48635753--48635777	13	1.9	13	100	0	50	36	16	0	48	1.46
48635883--48635924	20	2.1	20	100	0	84	26	23	21	28	1.99
48642405--48642481	27	2.7	27	84	9	84	58	3	7	29	1.44
48642403--48642458	3	17.7	3	78	10	58	64	0	7	28	1.20
48644743--48644791	18	2.7	18	78	15	55	38	2	6	53	1.38
48645908--48645941	15	2.3	15	89	0	50	35	0	2	61	1.11
48646822--48646860	20	2.0	20	84	0	51	43	7	12	35	1.72
48647367--48647408	22	2.0	22	90	4	68	50	0	40	9	1.35
48656828--48657030	106	1.9	107	91	1	336	35	18	15	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48657893--48657958	28	2.4	27	79	20	84	59	1	3	36	1.22
48657894--48657952	28	2.1	28	87	12	86	61	1	3	33	1.23
48658124--48658171	3	16.3	3	93	4	71	68	27	0	4	1.07
48661458--48661485	14	2.0	14	100	0	56	57	14	0	28	1.38
48666442--48666492	21	2.5	21	79	20	63	74	7	1	15	1.13
48666851--48666880	16	1.9	16	93	6	53	56	3	20	20	1.56
48672571--48672610	20	2.0	20	85	4	55	32	7	15	45	1.74
48679849--48680210	44	7.8	45	74	13	256	34	18	17	28	1.94
48679849--48680206	95	3.9	89	77	7	263	34	18	18	28	1.95
48679889--48680210	95	3.4	94	80	7	334	35	18	17	29	1.94
48680019--48680210	51	3.9	51	72	12	175	35	18	15	30	1.92
48681795--48681893	4	24.8	4	74	15	80	23	8	0	68	1.15
48686560--48686584	9	2.8	9	100	0	50	68	8	0	24	1.16
48691464--48691508	9	5.0	9	83	0	54	46	20	8	24	1.78
48693604--48693649	3	15.3	3	100	0	92	67	0	0	32	0.91
48694224--48694255	10	3.2	10	95	0	55	37	0	12	50	1.41
48694223--48694252	14	2.1	14	93	0	51	40	0	10	50	1.36
48699182--48699233	25	2.1	25	96	0	95	44	9	26	19	1.81
48701928--48701971	11	3.8	11	80	11	52	31	0	4	63	1.14
48703919--48704183	33	7.9	33	70	7	149	30	15	25	29	1.95
48703889--48704193	101	3.0	101	91	0	493	31	15	25	28	1.95
48704684--48704768	27	3.1	27	93	0	134	42	25	8	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48704684--48704768	9	9.4	9	90	0	116	42	25	8	23	1.82
48704872--48704918	18	2.6	18	86	0	67	17	2	40	40	1.61
48712757--48712808	24	2.2	24	89	0	77	55	9	1	32	1.43
48714726--48714777	24	2.2	24	89	0	77	55	9	1	32	1.43
48716315--48716359	21	2.0	23	83	8	58	20	17	48	13	1.80
48716315--48716366	21	2.5	22	79	14	56	17	17	51	13	1.76
48725263--48725319	23	2.5	22	86	8	71	38	40	7	14	1.73
48726928--48727128	106	1.9	106	96	0	375	29	20	19	30	1.97
48743470--48743627	82	1.9	82	82	7	196	42	10	12	34	1.77
48748518--48748561	24	1.9	24	90	9	74	36	0	2	61	1.09
48748661--48748688	9	3.1	9	100	0	56	57	10	0	32	1.33
48748631--48748764	68	2.0	66	92	2	223	47	8	3	39	1.53
48748878--48748918	16	2.6	16	92	0	64	43	7	2	46	1.44
48748892--48748953	23	2.7	23	82	2	72	48	1	1	48	1.21
48749978--48750023	22	2.1	22	83	0	56	10	15	0	73	1.08
48749970--48750039	28	2.5	28	75	15	72	8	18	0	72	1.09
48756626--48756757	42	3.1	42	86	0	147	15	22	15	46	1.83
48756625--48756729	21	5.0	21	72	0	75	17	22	14	45	1.84
48756649--48756777	42	3.0	43	83	5	156	13	24	15	46	1.82
48756746--48756805	21	2.9	21	76	0	66	21	25	11	41	1.87
48763909--48763980	21	3.5	20	67	7	54	12	22	15	50	1.77
48763842--48764015	42	4.1	42	78	7	156	17	18	16	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48766207--48766269	27	2.3	27	86	0	81	14	25	22	38	1.92
48766367--48766453	45	1.9	45	85	0	120	25	21	12	40	1.89
48768610--48768639	14	2.1	14	93	0	51	53	0	0	46	1.00
48775492--48775533	21	2.0	21	85	0	57	35	0	26	38	1.57
48778250--48778284	18	1.9	18	94	0	61	54	2	5	37	1.39
48778497--48778578	36	2.2	37	81	12	98	53	2	8	35	1.45
48778709--48778773	3	21.3	3	80	3	76	60	1	7	30	1.34
48785344--48785408	4	15.5	4	77	17	62	21	4	0	73	1.00
48786378--48786423	19	2.5	20	82	10	53	76	4	2	17	1.06
48786974--48787008	15	2.4	15	90	4	54	48	0	8	42	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313