genome.fa.s26.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  156  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49279161--49279202	6	7.0	6	97	0	75	50	14	0	35	1.43
49280739--49280792	15	3.3	15	74	18	54	46	0	1	51	1.11
49280825--49280861	16	2.3	16	86	13	58	40	0	0	59	0.97
49280885--49280928	22	2.0	22	86	0	61	47	0	0	52	1.00
49286415--49286463	16	3.1	16	77	14	57	42	8	0	48	1.32
49286412--49286460	24	2.0	24	85	14	66	42	6	0	51	1.27
49290182--49290244	30	2.1	30	96	0	117	23	3	15	57	1.53
49290401--49290430	10	3.1	10	95	4	53	0	33	60	6	1.23
49295979--49296026	17	2.7	17	83	6	51	72	2	8	16	1.18
49295992--49296047	19	2.9	19	81	5	60	67	0	10	21	1.20
49300935--49300977	19	2.2	20	84	12	63	32	18	0	48	1.48
49301166--49301362	45	4.4	45	90	0	304	41	18	18	21	1.91
49302523--49302549	13	2.1	13	100	0	54	55	7	7	29	1.55
49303569--49303637	26	2.6	26	86	2	93	28	24	10	36	1.88
49307063--49307111	26	1.9	25	91	4	80	42	12	14	30	1.82
49310215--49310385	86	2.0	86	89	0	261	35	18	10	36	1.85
49329683--49329709	14	1.9	14	100	0	54	51	0	3	44	1.19
49330709--49330763	19	3.0	19	78	5	60	50	1	1	45	1.22
49334512--49334549	17	2.2	18	90	4	60	76	2	13	7	1.11
49347549--49347607	29	2.0	30	83	3	75	27	6	16	49	1.71
49348363--49348387	11	2.3	11	100	0	50	84	0	8	8	0.79
49353657--49353682	7	3.7	7	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49364641--49364679	6	6.5	6	96	0	69	69	28	0	2	1.02
49364633--49364679	18	2.6	18	89	0	67	68	27	2	2	1.13
49375174--49375376	103	2.0	103	94	0	352	42	17	23	17	1.89
49376793--49376857	32	2.0	32	100	0	130	36	12	18	32	1.88
49387493--49387611	33	3.7	32	76	11	118	39	3	3	53	1.34
49387584--49387637	26	2.1	26	83	13	67	42	0	1	55	1.10
49390906--49390946	17	2.4	17	87	0	64	36	2	0	60	1.10
49401209--49401256	19	2.3	21	82	13	64	45	4	2	47	1.33
49404509--49404559	17	2.9	17	80	8	59	60	5	1	31	1.31
49404538--49404579	18	2.3	19	79	4	50	61	4	0	33	1.17
49407431--49407572	49	2.9	50	90	2	214	22	29	21	26	1.99
49411351--49411570	75	2.9	75	91	3	354	34	4	15	45	1.65
49415320--49415368	19	2.5	20	80	16	66	63	12	20	4	1.45
49416236--49416260	3	8.3	3	100	0	50	68	0	0	32	0.90
49416934--49416971	20	1.9	20	88	0	58	36	15	10	36	1.82
49417058--49417160	10	10.2	10	67	17	61	59	1	0	37	1.15
49417112--49417183	30	2.4	32	77	13	80	56	4	4	34	1.37
49417115--49417180	29	2.3	28	82	10	80	59	4	4	31	1.38
49417409--49417555	10	14.4	10	65	23	58	27	4	2	65	1.24
49417439--49417503	21	3.0	21	76	13	62	24	7	1	66	1.27
49417490--49417531	19	2.2	18	91	8	66	33	4	0	61	1.17
49417715--49417936	90	2.5	87	82	8	259	34	8	21	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49423332--49423427	49	2.0	49	85	4	131	25	20	11	42	1.85
49426127--49426192	33	2.0	33	90	0	105	37	22	15	24	1.92
49428454--49428540	25	3.5	25	90	0	138	25	12	22	39	1.90
49428454--49428559	25	4.2	25	84	7	117	27	13	21	37	1.91
49428454--49428559	50	2.1	50	84	3	133	27	13	21	37	1.91
49428520--49428573	25	2.2	25	83	6	65	29	11	18	40	1.85
49434318--49434369	9	5.4	9	80	8	50	9	5	3	80	0.99
49435190--49435591	198	2.0	198	98	1	772	27	8	5	57	1.53
49435206--49435635	198	2.2	197	92	3	697	27	9	6	56	1.55
49435608--49435647	17	2.4	17	82	0	53	40	0	2	57	1.12
49443925--49444127	42	4.8	42	88	0	280	30	22	22	24	1.99
49444130--49444798	334	2.0	334	100	0	1338	39	14	11	33	1.84
49444802--49444872	21	3.4	21	88	0	106	2	47	19	29	1.64
49448303--49448338	7	5.0	7	86	6	54	44	38	0	16	1.48
49448643--49448740	41	2.4	41	84	1	126	39	26	15	18	1.90
49448786--49448875	40	2.3	38	83	9	126	16	30	20	33	1.94
49448799--49448890	40	2.3	40	94	0	157	20	32	17	29	1.96
49458313--49458364	27	2.0	25	85	7	68	26	3	3	65	1.27
49459976--49460038	32	2.0	32	87	0	90	42	7	4	44	1.54
49466831--49466856	5	5.2	5	100	0	52	57	0	0	42	0.98
49475069--49475118	21	2.4	21	80	6	57	12	14	38	36	1.83
49480423--49480473	15	3.4	15	80	0	57	37	33	9	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49481368--49481406	18	2.2	17	86	4	51	17	30	38	12	1.88
49481700--49481724	13	1.9	13	100	0	50	12	16	16	56	1.68
49490311--49490483	70	2.5	71	81	4	208	16	21	41	20	1.90
49495166--49495230	9	7.2	9	89	6	78	23	10	24	41	1.86
49498036--49498090	27	2.1	26	83	10	67	16	25	20	38	1.92
49504118--49504173	28	2.0	28	83	13	71	39	0	26	33	1.57
49504922--49504985	17	3.6	17	74	15	67	26	12	14	46	1.79
49504914--49504984	36	2.0	36	97	0	133	25	12	15	46	1.81
49504913--49504969	19	3.1	19	71	19	66	26	12	15	45	1.82
49510062--49510125	17	3.6	17	72	15	58	28	12	12	46	1.78
49510054--49510124	36	2.0	36	94	0	124	26	12	14	46	1.80
49510053--49510109	19	3.1	19	71	19	66	26	12	15	45	1.82
49510329--49510423	48	2.0	48	95	0	172	17	15	23	43	1.88
49513009--49513065	29	1.9	30	82	10	73	40	7	7	45	1.58
49519206--49519232	13	2.1	13	100	0	54	44	33	14	7	1.73
49519235--49519293	7	8.3	7	81	3	73	16	16	13	52	1.75
49519540--49519645	37	2.9	37	88	0	158	32	3	13	50	1.59
49519645--49519728	9	9.4	9	86	2	125	32	8	23	35	1.85
49519645--49519728	35	2.4	36	93	2	143	32	8	23	35	1.85
49525705--49525778	36	2.0	37	86	2	105	20	17	13	48	1.80
49529194--49529241	3	15.3	3	82	8	60	0	27	0	72	0.84
49529196--49529244	16	3.1	16	86	13	75	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49529194--49529244	22	2.3	22	93	0	84	0	25	0	74	0.82
49542955--49543013	30	2.0	29	87	9	84	57	5	3	33	1.37
49545432--49545509	36	2.2	36	88	4	113	60	6	14	19	1.55
49545444--49545515	36	2.0	36	100	0	144	55	8	13	22	1.65
49568301--49568328	9	3.1	9	100	0	56	10	0	0	89	0.49
49568332--49568373	20	2.1	20	86	0	57	66	9	0	23	1.21
49571121--49571179	22	2.7	22	76	7	66	45	16	22	15	1.84
49576992--49577416	45	9.5	45	78	7	379	30	25	17	26	1.97
49576992--49577424	179	2.4	180	80	8	447	30	25	17	26	1.97
49576992--49577419	224	1.9	224	90	2	691	30	25	17	26	1.97
49590679--49592654	988	2.0	988	100	0	3952	30	11	19	39	1.86
49592808--49592852	18	2.5	19	82	7	58	40	0	2	57	1.11
49603335--49603374	20	2.0	20	100	0	80	40	15	20	25	1.90
49626873--49626929	30	1.9	30	86	10	82	59	3	1	35	1.25
49639802--49639827	10	2.6	10	100	0	52	61	0	0	38	0.96
49640288--49640325	21	1.9	20	89	10	60	71	0	0	28	0.87
49648324--49648359	17	2.0	17	89	10	54	72	0	27	0	0.85
49649227--49649329	37	2.6	39	80	9	129	24	17	26	32	1.97
49649519--49649567	22	2.3	22	86	6	66	44	4	22	28	1.71
49649521--49649569	21	2.3	20	83	10	62	44	4	22	28	1.71
49650975--49651012	20	2.0	20	94	5	69	31	0	10	57	1.32
49653432--49653492	30	2.0	30	96	0	113	40	21	1	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49654074--49654121	25	1.9	25	86	0	69	35	16	25	22	1.95
49654188--49654239	25	2.1	25	85	0	68	36	17	25	21	1.94
49654338--49654404	25	2.7	25	75	6	66	32	20	28	17	1.96
49665426--49665545	43	2.8	43	82	7	145	30	28	20	20	1.97
49667884--49667973	25	3.6	25	67	12	69	28	16	30	24	1.97
49676175--49676452	43	6.4	43	75	2	198	42	21	12	23	1.86
49676262--49676454	85	2.2	87	82	4	221	39	22	13	23	1.90
49676333--49676454	42	2.8	45	76	9	155	40	22	13	22	1.89
49676454--49676743	47	6.2	47	83	3	307	28	22	18	30	1.97
49676454--49676744	23	12.4	24	79	6	267	28	22	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313