genome.fa.s26.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  131  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42318707--42318799	42	2.2	42	92	0	150	30	21	19	29	1.97
42321645--42321695	15	3.5	15	77	15	54	76	0	7	15	1.00
42326897--42326999	49	2.1	48	82	10	122	38	2	4	53	1.37
42330875--42331440	303	1.9	303	87	0	828	40	9	11	38	1.74
42331972--42332052	36	2.3	35	78	18	94	64	2	3	29	1.24
42332316--42332366	20	2.5	20	84	12	61	39	5	0	54	1.24
42332325--42332371	20	2.3	22	82	14	64	42	6	2	48	1.40
42332676--42332737	19	3.2	20	69	15	58	30	4	1	62	1.25
42332676--42332754	10	8.1	10	74	5	63	27	5	3	63	1.33
42332695--42332767	28	2.6	28	82	6	76	27	4	5	63	1.35
42333590--42333635	22	2.1	22	87	0	65	21	10	13	54	1.69
42336626--42336650	6	4.2	6	100	0	50	84	0	0	16	0.63
42338654--42338689	17	2.1	17	94	0	63	27	13	11	47	1.77
42341463--42341505	17	2.5	17	82	17	54	18	4	0	76	0.95
42346803--42346883	39	2.1	39	100	0	162	32	4	17	45	1.69
42352023--42352109	22	3.7	23	72	20	74	32	4	8	55	1.50
42353001--42353268	133	2.0	133	97	0	500	35	14	14	34	1.87
42354444--42354498	28	1.9	28	85	3	74	56	16	1	25	1.50
42363863--42363894	4	8.0	4	100	0	64	75	0	0	25	0.81
42364999--42365060	21	3.2	20	75	13	65	58	4	6	30	1.44
42367567--42367591	13	1.9	13	100	0	50	68	0	0	32	0.90
42376777--42376805	4	7.2	4	100	0	58	24	0	24	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42382418--42382476	25	2.2	25	85	8	73	52	0	3	44	1.17
42382566--42382629	20	3.3	18	68	16	56	51	0	14	34	1.42
42382573--42382635	20	3.2	20	65	17	58	53	0	12	33	1.39
42382556--42382635	40	2.0	40	100	0	160	50	0	12	37	1.41
42392468--42392507	16	2.5	16	91	0	62	47	2	7	42	1.45
42392514--42392557	9	5.1	9	83	10	56	31	2	11	54	1.48
42392511--42392548	16	2.4	16	90	0	58	36	0	10	52	1.36
42392545--42392680	68	2.0	68	88	2	202	36	8	8	45	1.67
42392876--42392908	14	2.4	14	94	0	57	66	6	0	27	1.15
42398634--42398872	78	3.1	78	90	2	372	17	20	23	38	1.93
42398722--42398848	42	3.2	41	63	21	97	17	17	25	39	1.91
42404051--42404122	36	2.0	36	91	0	117	30	26	18	25	1.98
42404014--42404258	133	1.8	133	87	1	366	32	24	19	24	1.97
42405151--42405187	6	6.2	6	100	0	74	0	0	32	67	0.91
42406379--42406418	20	2.0	20	90	0	62	50	12	10	27	1.72
42407854--42407912	31	1.9	31	92	0	100	33	27	0	38	1.57
42436666--42436743	30	2.6	30	95	0	138	61	11	0	26	1.30
42438931--42438992	31	2.1	29	82	14	74	43	8	20	27	1.80
42444961--42445051	40	2.3	39	88	5	137	47	0	12	40	1.41
42445986--42446044	21	2.8	22	82	7	68	59	0	0	40	0.97
42445991--42446050	11	5.6	11	82	5	61	56	1	0	41	1.09
42446036--42446079	20	2.3	19	88	7	70	63	2	2	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446774--42446810	18	2.1	18	89	0	56	40	5	0	54	1.24
42447265--42447330	32	2.0	32	82	2	78	56	9	0	34	1.31
42449472--42449525	22	2.5	22	76	5	58	57	3	1	37	1.27
42450820--42450871	21	2.6	21	87	6	72	50	0	5	44	1.26
42450905--42450954	14	3.6	14	74	15	59	64	0	2	34	1.05
42451522--42451586	18	3.7	17	73	18	62	32	3	1	63	1.19
42452915--42452971	29	2.0	29	96	0	105	59	10	10	19	1.59
42457576--42457734	43	3.7	43	79	5	144	24	16	27	31	1.97
42462205--42462260	17	3.4	16	78	11	60	41	0	1	57	1.09
42462205--42462259	5	11.2	5	74	18	53	40	0	1	58	1.09
42462206--42462261	27	2.0	29	86	6	80	42	0	1	55	1.10
42462415--42462450	19	1.9	19	94	5	65	72	0	13	13	1.13
42462476--42462507	17	2.0	17	88	11	50	62	15	21	0	1.32
42463171--42463213	12	3.6	12	87	0	50	41	0	6	51	1.29
42463179--42463217	18	2.2	18	90	0	60	38	0	5	56	1.22
42464955--42465008	23	2.3	23	81	9	56	35	0	3	61	1.14
42470359--42470395	16	2.2	17	95	4	67	40	0	5	54	1.24
42474665--42474705	21	2.0	21	90	0	64	19	29	21	29	1.98
42482403--42484281	939	2.0	939	100	0	3758	34	17	13	34	1.89
42485591--42485658	31	2.3	31	82	10	79	33	13	14	38	1.85
42487704--42487741	18	2.2	18	90	9	62	71	2	5	21	1.19
42488845--42489190	102	3.2	103	80	13	415	44	14	15	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42488729--42489189	221	2.1	224	93	2	788	44	14	15	25	1.84
42488724--42489204	120	4.2	113	82	12	585	45	14	14	25	1.83
42489215--42489597	109	3.5	109	82	14	529	25	18	16	39	1.91
42490825--42490869	18	2.8	17	77	16	51	26	40	33	0	1.57
42497749--42497781	15	2.2	15	89	10	50	66	3	0	30	1.06
42500739--42500764	2	13.0	2	100	0	52	50	0	0	50	1.00
42508353--42508406	23	2.4	21	77	17	54	35	3	3	57	1.34
42512436--42512464	12	2.3	13	94	5	51	31	0	0	68	0.89
42526262--42526295	17	2.0	17	88	11	52	41	0	0	58	0.98
42527253--42527298	18	2.5	18	80	20	51	67	4	2	26	1.21
42541554--42541628	36	2.1	36	100	0	150	37	5	17	40	1.72
42553139--42553167	3	9.7	3	100	0	58	34	0	0	65	0.93
42556951--42556987	3	12.3	3	100	0	74	64	0	0	35	0.94
42557761--42557798	15	2.5	15	95	0	67	10	28	47	13	1.76
42558920--42558945	12	2.2	12	100	0	52	50	26	7	15	1.71
42561638--42561672	16	2.2	16	89	0	52	45	14	2	37	1.59
42562108--42562147	16	2.5	16	88	8	55	20	2	0	77	0.88
42567020--42567076	30	1.9	29	89	3	87	56	7	0	36	1.27
42572256--42572316	29	2.1	28	84	3	77	44	3	0	52	1.17
42572918--42572976	31	1.9	31	86	6	84	55	0	8	35	1.30
42572932--42572981	19	2.8	18	79	17	59	54	0	8	38	1.30
42577292--42577589	75	4.0	74	82	5	311	26	24	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42577293--42577566	148	1.8	150	82	4	349	26	23	11	37	1.89
42580508--42580590	20	4.1	20	72	14	80	36	1	0	62	1.03
42580537--42580577	11	3.5	11	84	12	55	36	2	0	60	1.10
42580537--42580575	13	3.2	12	86	10	53	33	2	0	64	1.08
42580528--42580605	41	1.9	39	94	5	138	35	2	0	61	1.10
42580562--42580616	29	2.0	26	89	10	83	40	1	0	58	1.09
42580591--42580642	23	2.2	24	81	18	65	42	1	1	53	1.23
42596237--42596263	12	2.2	12	100	0	54	55	0	0	44	0.99
42598448--42598496	23	2.1	23	84	0	62	44	20	6	28	1.75
42605335--42605506	33	5.2	32	70	10	112	31	15	23	29	1.95
42605269--42605506	100	2.4	101	89	1	370	31	14	23	29	1.95
42606833--42606862	11	2.7	11	100	0	60	30	26	20	23	1.98
42609091--42609149	21	2.6	24	71	20	63	37	6	40	15	1.74
42609099--42609138	21	1.9	21	90	10	64	40	10	35	15	1.80
42609269--42609312	18	2.4	18	85	7	54	50	0	45	4	1.22
42609281--42609321	9	4.6	9	87	0	64	53	0	43	2	1.13
42610879--42610932	18	2.8	19	76	18	67	33	0	1	64	1.04
42614507--42614543	16	2.4	16	90	4	58	59	5	2	32	1.34
42614725--42614771	23	2.0	23	100	0	94	53	17	0	29	1.44
42614799--42614932	23	5.8	23	82	13	177	52	17	0	29	1.45
42614817--42614912	42	2.3	42	94	0	165	53	18	0	28	1.45
42614798--42615334	19	26.3	19	67	24	137	55	13	0	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42614858--42615129	27	10.0	27	70	18	156	55	13	0	30	1.39
42614780--42615102	80	3.8	84	78	16	326	55	14	0	30	1.40
42614994--42615189	61	3.3	61	73	18	207	56	10	0	32	1.37
42615068--42615115	8	5.6	8	76	13	51	56	14	0	29	1.39
42615164--42615229	22	3.2	22	83	12	86	57	13	0	28	1.37
42615076--42615331	101	2.5	102	88	5	372	55	12	1	30	1.45
42615339--42615438	27	3.7	27	91	0	146	20	28	21	31	1.98
42618868--42618896	15	1.9	15	100	0	58	68	0	10	20	1.18
42622010--42622212	46	4.3	48	88	7	265	35	14	21	28	1.92
42621944--42622212	98	2.7	98	93	0	457	34	14	22	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313