Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  127  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41065807--41065844
18
2.1
19
85
5
51
50
0
15
34
1.45
41065917--41065943
5
5.4
5
100
0
54
81
0
0
18
0.69
41067473--41067514
19
2.1
21
86
8
61
47
0
2
50
1.14
41067630--41067668
21
1.9
20
94
5
69
79
0
5
15
0.90
41067631--41067669
15
2.6
15
79
0
51
82
0
5
12
0.83
41067968--41068033
29
2.2
31
83
5
82
34
6
3
56
1.40
41073654--41073708
16
3.1
18
79
12
69
40
0
1
58
1.09
41073654--41073698
18
2.4
19
88
3
65
35
0
2
62
1.08
41073718--41073761
20
2.3
18
81
11
52
59
0
0
40
0.98
41073719--41073763
19
2.3
20
88
3
65
60
0
0
40
0.97
41086389--41086440
22
2.5
19
71
17
50
48
1
5
44
1.38
41086674--41086707
16
2.2
16
89
5
52
61
0
26
11
1.30
41087274--41087328
21
2.6
21
88
5
76
23
29
1
45
1.63
41092390--41092443
27
2.0
27
82
3
65
57
5
14
22
1.58
41099774--41099833
30
2.0
31
83
9
79
41
0
38
20
1.52
41099944--41100005
30
2.1
30
87
0
88
41
0
38
19
1.51
41100047--41100083
9
4.1
9
89
0
56
27
13
13
45
1.81
41105070--41105103
3
11.0
3
87
6
50
29
2
32
35
1.73
41107031--41107068
6
6.5
6
90
6
60
0
63
2
34
1.09
41112645--41112692
12
4.5
11
75
19
57
50
0
0
50
1.00
41112644--41112705
31
2.0
31
87
6
90
54
0
0
45
0.99
41112694--41112718
11
2.3
11
100
0
50
84
0
0
16
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41112717--41112784
11
6.4
11
72
17
54
60
0
4
35
1.17
41112669--41112797
47
2.9
47
84
7
153
63
0
2
34
1.07
41112976--41113157
96
1.9
96
98
0
355
32
24
15
26
1.95
41116067--41116103
9
4.1
9
92
0
65
45
13
10
29
1.77
41134708--41134751
22
2.0
22
90
0
70
65
0
22
11
1.24
41142972--41143006
18
1.9
18
88
11
54
80
0
0
20
0.72
41142972--41143006
14
2.6
14
86
4
54
80
0
0
20
0.72
41143437--41143556
59
2.0
59
93
0
204
54
6
11
27
1.61
41146796--41146867
36
2.0
36
100
0
144
33
8
16
41
1.78
41154062--41154101
22
1.9
21
85
10
55
50
0
2
47
1.14
41155835--41155887
19
2.9
18
83
13
56
52
7
0
39
1.30
41155844--41155887
18
2.5
17
82
13
54
52
6
0
40
1.28
41155891--41155951
20
3.1
20
79
9
63
54
0
0
45
1.00
41155915--41155960
11
4.5
11
84
13
53
60
2
0
36
1.09
41155917--41155960
20
2.2
20
87
0
61
61
2
0
36
1.09
41157100--41157171
32
2.2
33
83
9
94
33
8
13
44
1.74
41166740--41166779
20
2.0
20
100
0
80
15
20
20
45
1.86
41171402--41171456
26
2.1
26
100
0
110
54
12
14
18
1.71
41178498--41178553
28
2.0
28
96
0
103
25
30
0
44
1.54
41180868--41180892
7
3.6
7
100
0
50
28
0
12
60
1.32
41182636--41182895
127
2.0
127
95
0
466
29
18
16
35
1.93
41182951--41183074
34
3.7
33
80
6
133
44
16
0
38
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41183044--41183106
27
2.3
27
80
2
72
38
15
0
46
1.47
41197524--41197708
46
4.0
46
95
0
307
28
26
10
34
1.90
41197959--41198470
252
2.0
252
99
0
1015
31
21
4
42
1.74
41209848--41209900
20
2.5
21
84
9
72
60
1
0
37
1.08
41209849--41209922
32
2.3
32
79
6
87
63
1
1
33
1.11
41209893--41209941
13
4.1
13
72
20
52
75
0
4
20
0.96
41209892--41209969
22
3.7
20
81
10
68
69
1
6
23
1.19
41209835--41210061
10
24.9
9
65
24
54
64
1
4
29
1.22
41209883--41209942
22
2.7
22
94
2
102
70
1
3
25
1.12
41209976--41210061
39
2.2
38
82
8
102
60
1
5
32
1.28
41210238--41210279
18
2.3
19
91
4
68
23
2
4
69
1.20
41210257--41210367
31
3.8
29
75
13
84
33
1
0
63
1.11
41210256--41210353
20
4.8
20
69
10
65
34
2
1
62
1.14
41210319--41210367
9
5.4
9
79
18
57
28
2
0
69
1.00
41213079--41213204
41
3.0
40
81
14
139
59
1
3
35
1.23
41213156--41213189
8
4.0
8
85
14
50
61
2
0
35
1.11
41213082--41213219
40
3.4
41
80
10
142
63
1
2
32
1.18
41213159--41213190
9
3.6
9
91
0
55
68
3
0
28
1.04
41213247--41213325
32
2.5
32
93
2
142
17
34
41
6
1.75
41219731--41219795
27
2.4
28
84
7
89
20
0
24
55
1.43
41224523--41224601
30
2.7
28
75
14
79
65
0
13
20
1.26
41225631--41225688
25
2.3
25
93
0
98
24
25
17
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41229738--41229786
13
3.8
13
88
0
80
8
18
46
26
1.76
41230555--41230666
23
4.9
23
74
15
106
41
18
11
28
1.86
41230556--41230666
46
2.4
46
87
1
159
41
18
11
27
1.86
41230556--41230671
24
5.0
23
70
15
87
43
18
11
27
1.84
41231310--41231447
41
3.4
38
75
14
116
34
26
14
23
1.94
41231463--41231653
94
2.0
94
91
0
310
41
14
12
31
1.83
41245425--41245719
41
7.2
41
83
6
319
17
17
31
32
1.94
41245634--41245710
40
1.9
40
89
0
118
20
16
23
38
1.92
41245912--41246049
7
19.6
7
71
11
68
19
1
31
47
1.58
41245912--41246026
21
5.4
20
75
9
86
19
1
32
46
1.60
41246347--41246377
14
2.2
14
94
0
53
32
0
32
35
1.58
41246319--41246377
21
2.8
21
81
0
64
27
0
33
38
1.57
41248638--41248666
14
2.1
14
100
0
58
27
10
13
48
1.75
41250243--41250470
43
5.3
43
84
3
271
19
17
32
30
1.95
41258632--41258714
43
1.9
43
100
0
166
50
8
16
24
1.73
41274725--41274755
14
2.2
14
94
0
53
38
0
12
48
1.42
41278510--41278540
15
2.0
16
93
6
55
6
51
0
41
1.27
41279131--41279202
6
11.7
6
79
10
65
15
4
5
75
1.15
41281864--41281894
14
2.2
14
94
0
53
38
3
12
45
1.59
41282487--41282673
92
2.0
92
93
0
320
26
8
20
44
1.80
41289866--41290198
43
7.8
42
74
13
227
26
20
27
25
1.99
41289847--41290103
85
3.0
83
73
17
231
24
17
29
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41289870--41290137
128
2.1
129
82
8
316
26
18
28
26
1.98
41300022--41300071
15
3.2
15
76
20
57
50
14
0
36
1.43
41302237--41302304
4
16.8
4
74
17
52
1
23
4
70
1.13
41302237--41302306
33
2.1
34
86
2
97
1
22
4
71
1.12
41307501--41307955
227
2.0
227
100
0
910
34
14
21
29
1.93
41315645--41315674
5
6.2
5
92
7
53
83
0
0
16
0.65
41317277--41317490
43
5.0
43
93
0
365
33
26
15
24
1.95
41317605--41317687
31
2.7
30
87
3
121
40
19
10
28
1.85
41317605--41317698
31
3.1
30
77
10
100
43
19
9
27
1.82
41321006--41321059
25
2.2
24
83
9
65
31
3
3
61
1.31
41321201--41321238
20
1.9
20
94
0
67
28
2
7
60
1.38
41334137--41334164
11
2.5
11
100
0
56
7
39
10
42
1.67
41335934--41336023
23
4.0
22
76
13
85
18
6
22
52
1.69
41340475--41340683
92
2.3
91
86
5
278
45
3
3
46
1.39
41340611--41340658
26
1.9
25
84
16
64
45
0
2
52
1.12
41340737--41340945
66
3.3
64
68
21
190
42
2
6
48
1.43
41340699--41340991
120
2.4
120
94
2
509
43
2
4
49
1.36
41340824--41340875
15
3.6
15
80
12
56
44
0
1
53
1.11
41340953--41340994
15
2.7
16
82
14
52
45
0
2
52
1.13
41340944--41340985
15
2.9
15
82
10
52
47
0
0
52
1.00
41340928--41341244
157
2.0
157
96
0
580
47
5
3
43
1.42
41341097--41341131
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41346250--41346308
30
2.0
29
87
6
84
22
13
20
44
1.86
41347963--41348026
27
2.3
27
94
2
110
32
12
7
46
1.70
41351100--41351143
22
2.0
22
100
0
88
31
9
22
36
1.86
41359080--41359139
29
2.1
29
100
0
120
18
20
28
33
1.96
41360603--41360653
24
2.1
24
88
0
75
35
0
1
62
1.06
41360941--41360996
21
2.7
21
85
0
76
25
5
37
32
1.78
41366750--41366780
16
1.9
16
93
0
53
45
6
22
25
1.76
41366818--41366880
30
2.2
29
75
8
67
41
0
3
55
1.16
41369717--41369751
15
2.2
16
90
5
54
51
2
0
45
1.16
41369805--41369854
25
2.0
25
84
0
64
34
12
16
38
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313