Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  306  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94015797--94015838
18
2.4
17
84
11
50
38
14
7
40
1.73
94015851--94016061
18
11.9
19
70
11
78
31
13
11
43
1.79
94015808--94016051
35
6.9
35
70
11
122
34
14
10
40
1.80
94015977--94016053
17
4.4
18
75
8
79
28
11
12
46
1.77
94015960--94016053
34
2.7
35
83
3
120
29
11
12
45
1.78
94015960--94016067
34
3.2
34
79
10
114
30
11
12
46
1.76
94016095--94016192
17
5.8
16
69
14
54
25
10
13
51
1.72
94022299--94022335
17
2.2
17
90
0
56
45
0
0
54
1.00
94023021--94023160
71
2.0
71
98
0
271
51
5
17
25
1.67
94023805--94023854
24
2.1
24
96
0
91
48
4
14
34
1.62
94024045--94024107
32
2.0
32
90
0
99
42
3
7
46
1.49
94024252--94024284
17
2.0
17
88
5
50
48
0
3
48
1.17
94026676--94026785
49
2.3
47
79
11
111
33
3
1
60
1.24
94026773--94026801
6
4.8
6
100
0
58
31
0
0
68
0.89
94031579--94033030
414
3.5
414
99
0
2877
32
14
20
32
1.92
94041153--94041303
55
2.8
54
82
4
187
24
7
17
50
1.70
94053548--94053596
18
2.7
18
90
0
80
26
24
14
34
1.94
94061794--94061898
51
2.1
51
87
3
149
42
6
11
39
1.67
94066514--94066582
34
2.0
34
97
0
129
21
10
20
47
1.79
94072724--94072768
22
2.1
21
83
4
54
17
40
17
24
1.91
94075832--94075933
42
2.4
42
79
8
100
29
18
22
29
1.97
94075835--94075951
43
2.8
42
71
14
107
28
19
23
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94080305--94080330
13
2.0
13
100
0
52
23
30
23
23
1.99
94101183--94101207
4
6.2
4
100
0
50
0
24
0
76
0.80
94105082--94105119
19
2.0
19
100
0
76
36
5
31
26
1.79
94110871--94110920
25
2.0
25
88
7
75
4
34
4
58
1.36
94115286--94115427
54
2.6
54
100
0
284
24
19
26
30
1.98
94116007--94116051
23
2.0
23
82
8
56
37
8
13
40
1.76
94117077--94117109
15
2.2
15
94
0
57
18
24
18
39
1.92
94117930--94117975
19
2.3
20
92
7
85
47
10
10
30
1.73
94120112--94120179
33
2.1
33
91
0
109
36
11
16
35
1.85
94123897--94123926
14
2.1
14
93
0
51
30
13
16
40
1.87
94124481--94124541
3
20.3
3
96
0
113
34
31
0
34
1.58
94134406--94134461
26
2.2
26
100
0
112
30
7
26
35
1.83
94143175--94143224
18
2.8
17
82
8
64
40
0
0
60
0.97
94143184--94143258
20
3.8
19
73
15
62
33
1
2
62
1.17
94145171--94145294
50
2.4
51
86
4
169
37
12
25
25
1.90
94147832--94147880
23
2.1
23
88
3
71
38
26
20
14
1.91
94147845--94147961
23
5.0
23
74
12
103
33
24
26
15
1.95
94147815--94147951
71
1.9
71
79
5
152
35
24
24
16
1.94
94150179--94150238
21
2.8
21
80
10
68
56
8
0
35
1.29
94152707--94152763
27
2.1
27
87
9
82
56
15
8
19
1.65
94153880--94153916
11
3.4
11
88
0
56
29
0
0
70
0.88
94158098--94158813
351
2.0
351
92
0
1189
22
26
24
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94159687--94159739
21
2.5
22
76
11
56
32
18
7
41
1.79
94161905--94161956
19
2.7
19
79
8
61
57
3
0
38
1.17
94161905--94161992
19
4.8
19
68
13
60
56
3
0
39
1.16
94162297--94162325
15
1.9
15
100
0
58
62
6
0
31
1.22
94166528--94166713
68
2.7
68
87
0
264
34
17
22
25
1.95
94167622--94167660
21
1.9
20
89
5
60
35
0
17
46
1.49
94179077--94179193
41
2.8
43
80
3
139
29
25
18
26
1.98
94179077--94179193
43
2.8
41
78
8
128
29
25
18
26
1.98
94189465--94189638
92
1.9
92
89
2
269
25
22
21
29
1.99
94196500--94196546
22
2.1
23
84
4
60
12
12
2
72
1.21
94196538--94196579
8
5.2
8
85
0
57
40
2
0
57
1.12
94196701--94196802
52
2.0
52
94
1
179
29
20
3
46
1.69
94199347--94199473
49
2.7
46
80
9
143
23
27
20
28
1.99
94209934--94210048
48
2.5
46
83
9
144
26
31
16
26
1.97
94217138--94217174
9
4.2
9
93
6
67
21
0
0
78
0.75
94217170--94217220
8
6.9
8
80
17
65
45
0
0
54
0.99
94217148--94217219
16
4.2
16
80
8
63
37
0
0
62
0.95
94217140--94217217
13
6.1
13
75
15
56
35
0
0
64
0.94
94218037--94218062
9
2.9
9
100
0
52
23
0
30
46
1.53
94219752--94219776
13
1.9
13
100
0
50
24
32
24
20
1.98
94225731--94225873
43
3.3
43
82
5
164
26
13
25
33
1.94
94235514--94235552
20
1.9
21
84
5
53
7
15
2
74
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94236538--94236576
20
1.9
20
84
5
51
79
0
7
12
0.93
94248399--94248473
20
3.6
19
76
20
62
54
5
1
38
1.31
94248395--94248458
20
3.3
18
81
16
67
56
7
1
34
1.38
94249131--94249189
22
2.7
22
81
0
64
28
18
22
30
1.97
94249719--94249843
40
3.1
40
100
0
250
31
23
9
36
1.87
94249909--94249955
13
3.6
13
82
8
60
53
2
0
44
1.12
94253928--94254092
89
1.9
87
86
5
233
53
7
1
36
1.41
94254011--94254121
32
3.3
32
66
18
89
53
7
2
36
1.43
94254011--94254147
70
1.9
71
94
1
240
51
8
2
38
1.44
94253923--94254092
87
2.0
86
83
6
218
54
7
1
36
1.40
94254104--94254128
13
1.9
13
100
0
50
56
8
0
36
1.29
94262014--94262078
28
2.3
28
86
5
96
24
24
15
35
1.94
94262598--94262653
24
2.3
24
84
6
69
48
25
14
12
1.78
94273166--94273209
23
1.9
23
90
0
70
59
0
2
38
1.10
94278595--94278660
34
2.0
33
87
3
96
62
10
9
18
1.53
94278709--94278796
41
2.1
42
85
2
115
60
11
2
26
1.43
94284611--94284643
16
1.9
18
88
11
52
54
0
0
45
0.99
94284853--94284907
21
2.6
21
82
2
56
58
16
12
12
1.64
94285147--94285186
20
2.0
20
100
0
80
40
20
5
35
1.74
94288852--94288892
21
2.0
21
95
0
73
51
17
14
17
1.77
94292170--94292344
60
2.9
62
77
13
177
27
26
19
26
1.99
94299102--94299201
28
3.5
28
82
8
139
32
29
17
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94299162--94299242
40
2.0
40
87
0
117
29
27
22
20
1.99
94307166--94307216
8
6.2
8
97
2
93
49
0
0
50
1.00
94308090--94308137
22
2.0
24
84
11
64
43
14
0
41
1.45
94315126--94315389
40
6.6
40
87
6
349
25
22
27
24
2.00
94315126--94315422
159
1.9
159
82
6
379
26
22
26
24
2.00
94322611--94322635
12
2.1
12
100
0
50
60
16
8
16
1.58
94342254--94342424
93
1.8
93
96
0
315
28
27
21
22
1.99
94342249--94342421
46
3.7
46
76
13
192
28
26
21
23
1.99
94350588--94350758
93
1.8
93
96
0
315
28
29
21
21
1.98
94350583--94350755
46
3.7
46
80
13
219
28
28
21
21
1.98
94351178--94351237
30
2.0
30
90
0
93
30
25
8
36
1.85
94376324--94376348
12
2.1
12
100
0
50
16
8
16
60
1.58
94378672--94378829
86
1.8
86
83
5
212
25
15
24
33
1.95
94378679--94378838
43
3.7
42
73
13
137
25
16
25
33
1.96
94383641--94383666
3
8.7
3
100
0
52
0
0
30
69
0.89
94389971--94390035
23
2.9
23
77
11
73
32
20
20
27
1.97
94389971--94390037
22
3.0
21
76
10
71
34
19
19
26
1.96
94393295--94393390
48
2.0
48
97
0
183
34
12
30
22
1.91
94394330--94394379
20
2.6
19
84
9
57
42
0
22
36
1.54
94395217--94395388
49
3.5
49
78
5
170
27
18
28
25
1.98
94396355--94396526
49
3.5
49
78
5
170
27
18
28
25
1.98
94414584--94414658
26
2.8
26
80
11
80
68
6
2
22
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94415634--94415684
24
2.2
24
80
10
63
5
15
9
68
1.36
94416892--94416995
53
2.0
53
90
3
165
53
7
16
22
1.67
94417322--94417406
5
16.8
5
95
4
136
1
18
0
80
0.79
94425520--94425552
15
2.1
16
88
5
50
51
0
15
33
1.43
94426218--94426276
24
2.5
24
80
0
73
55
3
6
33
1.43
94426401--94426433
17
2.0
16
94
5
57
66
3
0
30
1.06
94430447--94430548
51
2.0
51
98
0
195
31
14
7
46
1.73
94436541--94436571
7
4.4
7
100
0
62
25
0
25
48
1.52
94439750--94439809
10
5.8
10
74
14
50
58
0
1
40
1.08
94439792--94439848
29
1.9
30
82
10
73
61
3
0
35
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313