genome.fa.s26.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  183  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56621809--56622208	202	2.0	202	100	0	800	34	15	13	37	1.87
56623682--56623737	29	1.9	29	85	0	76	41	8	16	33	1.79
56626878--56627233	180	2.0	180	97	0	667	44	16	19	20	1.87
56631224--56631251	3	9.3	3	100	0	56	67	0	0	32	0.91
56634460--56634644	66	2.8	65	77	4	183	25	27	22	24	2.00
56636922--56636997	23	3.3	23	92	0	134	22	21	26	30	1.99
56651394--56651428	3	11.7	3	100	0	70	31	0	0	68	0.90
56655708--56655893	73	2.5	73	99	0	363	27	6	24	40	1.80
56657977--56658048	18	4.1	18	78	8	69	13	20	33	31	1.92
56657946--56658048	17	5.9	17	71	17	70	18	20	31	30	1.96
56657922--56658048	34	3.7	34	73	12	98	18	20	29	31	1.96
56670580--56670640	11	5.6	11	82	9	81	62	0	1	36	1.05
56670592--56670629	20	1.9	20	100	0	76	68	0	0	31	0.90
56670577--56670655	31	2.5	31	95	2	140	63	0	1	35	1.03
56672754--56672809	28	2.0	28	89	0	85	23	14	12	50	1.77
56675164--56675206	18	2.4	18	88	0	59	18	27	6	46	1.75
56675760--56675849	33	3.1	27	71	18	74	43	33	0	23	1.54
56675765--56675849	27	2.9	29	82	13	102	43	31	0	24	1.55
56675831--56675863	15	2.2	15	94	0	57	48	24	0	27	1.51
56675988--56676044	6	9.0	6	77	11	60	31	43	1	22	1.64
56675988--56676051	33	1.9	33	96	0	119	32	40	1	25	1.65
56675823--56676056	107	2.3	103	86	7	330	42	34	1	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56676060--56676094	18	1.9	18	88	0	52	48	34	2	14	1.58
56676114--56676164	16	2.8	19	67	27	56	50	11	0	37	1.39
56676217--56676265	22	2.2	23	88	3	73	46	2	2	48	1.25
56676727--56676787	29	2.1	30	87	6	90	36	3	0	60	1.13
56676990--56677020	7	4.4	7	95	0	53	48	29	0	22	1.51
56676983--56677020	14	2.6	14	87	4	58	47	31	0	21	1.51
56679202--56679306	44	2.4	44	85	6	135	33	5	11	49	1.62
56680630--56680677	24	2.0	24	87	0	69	33	14	25	27	1.94
56681113--56681145	9	3.6	9	95	4	57	33	12	12	42	1.79
56683290--56683371	39	2.1	40	86	2	112	18	23	28	30	1.97
56683676--56683734	18	3.2	18	79	13	59	33	0	0	66	0.92
56684659--56684696	7	5.4	7	96	0	67	26	2	13	57	1.49
56686919--56687032	25	4.5	24	73	9	93	24	20	22	31	1.97
56699968--56700003	3	12.0	3	93	0	63	69	0	30	0	0.89
56702587--56702825	101	2.4	101	93	0	406	24	17	26	30	1.97
56702579--56702852	51	5.4	52	72	8	235	24	16	27	31	1.97
56702887--56703094	43	4.9	43	81	7	264	24	15	25	34	1.95
56702883--56703094	85	2.5	85	96	0	390	23	16	25	33	1.96
56710800--56710843	23	1.9	23	95	0	79	25	4	25	45	1.72
56715495--56715525	16	1.9	16	93	0	53	25	35	6	32	1.82
56715545--56715615	32	2.2	32	85	5	90	32	12	40	14	1.83
56715664--56715767	16	6.5	16	76	2	75	29	15	42	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56715663--56715771	32	3.4	32	81	5	130	30	15	42	11	1.83
56715562--56715780	48	4.5	48	69	13	122	31	13	39	15	1.85
56715770--56715805	16	2.2	16	90	0	54	30	13	38	16	1.88
56715757--56715814	18	3.3	18	74	13	59	27	17	41	13	1.87
56717147--56717205	23	2.5	23	81	8	57	69	0	6	23	1.12
56717193--56717305	18	6.3	16	71	20	66	57	0	4	37	1.25
56717205--56717323	54	2.3	52	81	10	127	55	0	5	38	1.28
56717251--56717306	20	2.8	20	78	5	60	55	0	3	41	1.17
56717588--56717746	20	8.2	19	67	16	67	36	3	2	57	1.28
56717589--56717760	21	9.1	19	66	19	67	37	2	2	57	1.26
56717692--56717722	16	1.9	16	93	0	53	29	0	0	70	0.87
56717697--56717755	18	3.2	17	79	13	64	30	1	0	67	1.00
56719169--56719219	26	2.0	26	84	3	68	68	1	3	25	1.17
56724406--56724481	20	3.8	20	70	1	64	19	25	19	35	1.95
56724302--56724470	80	2.1	80	83	0	203	20	27	18	34	1.95
56724302--56724472	40	4.3	40	81	3	182	20	26	18	33	1.96
56724527--56724605	20	4.0	20	76	3	79	12	27	17	41	1.86
56735969--56736006	3	12.7	3	100	0	76	31	0	0	68	0.90
56740294--56740337	3	14.7	3	100	0	88	31	0	0	68	0.90
56754150--56754219	26	2.7	26	80	8	88	37	10	18	34	1.84
56758140--56758176	17	2.2	17	100	0	74	51	0	37	10	1.37
56758401--56758692	50	5.9	50	85	2	338	27	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56758900--56758930	16	1.9	16	93	0	53	51	6	22	19	1.69
56758901--56758946	20	2.3	20	84	0	65	56	2	23	17	1.52
56765104--56765296	50	3.9	50	82	0	206	26	21	30	21	1.98
56765105--56765296	100	1.9	100	82	0	240	26	21	30	21	1.98
56765549--56765579	16	1.9	16	93	0	53	51	6	22	19	1.69
56765550--56765595	20	2.3	20	84	0	65	56	2	23	17	1.52
56766213--56766264	24	2.2	24	89	0	77	55	9	1	32	1.43
56768183--56768234	24	2.2	24	89	0	77	55	9	1	32	1.43
56771803--56771873	24	3.0	24	87	0	88	15	36	5	42	1.71
56779128--56779160	17	2.0	17	88	5	50	36	3	3	57	1.29
56779322--56779403	31	2.7	30	80	17	98	50	10	0	39	1.38
56789895--56789937	22	1.9	23	81	13	54	62	13	6	16	1.51
56805442--56805500	29	2.0	30	90	3	93	54	11	1	32	1.47
56805446--56805522	31	2.6	29	81	6	82	50	12	1	35	1.49
56806052--56806405	126	2.8	126	96	0	636	28	16	21	33	1.95
56809111--56809350	116	2.1	116	95	0	426	43	9	8	38	1.68
56809385--56809438	21	2.5	22	90	3	92	25	0	33	40	1.56
56809424--56809620	29	7.2	28	73	19	168	27	0	27	44	1.59
56809507--56809550	21	2.0	22	91	4	72	27	0	25	47	1.52
56809589--56809676	42	2.2	40	80	13	94	26	0	28	45	1.54
56809654--56809682	15	2.0	15	93	6	51	13	0	41	44	1.44
56809621--56809965	134	2.5	133	88	6	453	27	0	26	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56809727--56809786	21	2.9	21	85	14	88	28	0	25	46	1.53
56809770--56809840	29	2.4	29	97	0	133	28	0	25	46	1.53
56809631--56809800	23	7.3	23	67	25	101	25	0	28	45	1.54
56809708--56809974	134	2.0	134	97	1	500	28	0	25	46	1.53
56809861--56809916	21	2.6	22	85	5	87	26	0	23	50	1.50
56809840--56810019	29	7.4	23	72	24	101	28	0	25	46	1.53
56809904--56809992	29	3.1	29	93	0	160	29	0	24	46	1.53
56810015--56810152	25	5.7	25	76	13	146	41	13	0	44	1.49
56810025--56810206	45	4.0	45	74	14	156	45	13	0	41	1.47
56810629--56810663	18	1.9	18	94	0	61	34	8	31	25	1.86
56812061--56812109	22	2.2	22	100	0	98	38	0	32	28	1.57
56812077--56812133	11	5.1	11	74	18	55	43	0	33	22	1.54
56813918--56813961	21	2.1	21	87	8	63	36	20	9	34	1.84
56816099--56816210	44	2.6	44	91	1	181	30	23	15	31	1.95
56816282--56816314	17	1.9	17	88	11	50	45	21	0	33	1.52
56825892--56825949	29	2.0	30	86	10	84	65	1	5	27	1.23
56837637--56837683	17	2.9	16	81	12	51	78	2	2	17	0.94
56839026--56839074	24	2.0	24	88	0	71	32	24	6	36	1.80
56850533--56850582	17	2.9	17	84	3	55	78	2	4	16	1.00
56862979--56863003	13	1.9	13	100	0	50	32	4	24	40	1.73
56864227--56864276	25	2.0	25	92	0	82	30	18	30	22	1.97
56867553--56867578	13	2.0	13	100	0	52	23	7	46	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56885248--56885291	6	7.2	6	92	2	52	15	25	0	59	1.37
56885249--56885291	12	3.5	12	87	3	59	16	25	0	58	1.38
56885248--56885290	18	2.3	19	88	4	61	16	25	0	58	1.38
56887241--56887435	98	2.0	98	95	0	354	27	10	25	36	1.89
56898935--56899143	44	4.8	44	68	14	144	31	19	24	23	1.98
56898972--56899180	44	4.8	46	69	20	153	32	20	23	23	1.98
56899237--56899421	44	4.2	44	63	13	110	30	21	22	25	1.99
56899369--56899817	44	10.2	44	64	13	154	30	19	24	26	1.98
56898861--56899938	132	8.2	132	92	0	1665	30	19	24	24	1.98
56898861--56900082	264	4.6	263	87	2	1582	31	19	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313