Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  157  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49676770--49676818
25
2.0
25
87
0
71
34
18
10
36
1.85
49678340--49678416
16
4.4
16
79
15
66
66
5
0
28
1.13
49679554--49679594
14
2.6
16
85
14
59
63
0
0
36
0.95
49680703--49680752
17
2.7
20
78
18
70
10
0
44
46
1.37
49685342--49685391
17
2.7
20
78
18
70
10
0
44
46
1.37
49694120--49694153
17
2.0
17
94
0
59
44
50
0
5
1.26
49698759--49698792
17
2.0
17
94
0
59
44
50
0
5
1.26
49703398--49703431
17
2.0
17
94
0
59
44
50
0
5
1.26
49711267--49711300
17
2.0
17
88
0
50
26
8
14
50
1.72
49715966--49716365
126
3.2
126
90
1
579
30
16
16
37
1.91
49716447--49716580
33
4.0
33
80
7
146
43
12
0
43
1.48
49717196--49717228
15
2.1
16
88
5
50
33
0
0
66
0.92
49718102--49718156
16
3.4
16
80
9
67
58
10
5
25
1.53
49718674--49718701
12
2.3
12
100
0
56
78
0
0
21
0.75
49723153--49723206
16
3.4
16
89
0
81
27
1
35
35
1.68
49723440--49723474
18
2.0
17
88
5
52
54
0
0
45
0.99
49723327--49723643
157
2.0
157
96
0
589
44
3
5
47
1.41
49723577--49723618
15
2.7
16
82
14
52
52
2
0
45
1.13
49723586--49723627
15
2.9
15
82
10
52
52
0
0
47
1.00
49735714--49735879
27
6.2
26
77
6
170
42
20
16
19
1.89
49735706--49735879
54
3.2
54
91
0
260
43
19
16
20
1.88
49736073--49736126
26
2.1
26
92
0
90
18
20
24
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49736227--49736290
28
2.3
28
84
7
78
23
21
21
32
1.98
49741650--49742217
284
2.0
284
98
0
1109
33
13
18
34
1.90
49747562--49747594
16
2.0
17
88
5
50
81
6
6
6
0.97
49747716--49747752
6
6.0
6
93
6
65
48
16
18
16
1.81
49748519--49748552
16
2.1
17
89
10
54
61
0
0
38
0.96
49748548--49748578
16
1.9
16
93
0
53
61
3
3
32
1.28
49751176--49751205
14
2.1
15
93
6
53
66
0
20
13
1.24
49752693--49752764
25
3.0
25
75
4
76
34
18
27
19
1.95
49752849--49752909
26
2.4
25
89
8
88
40
22
24
11
1.87
49754784--49754888
41
2.6
41
89
3
158
19
30
20
29
1.97
49756301--49756359
28
2.0
31
83
9
79
50
5
0
44
1.24
49763148--49763186
20
2.0
20
94
0
69
33
10
5
51
1.58
49766615--49766917
151
2.0
151
93
0
516
27
19
29
24
1.98
49768748--49768790
23
2.0
22
86
9
61
20
6
6
65
1.41
49768830--49768882
29
1.9
26
85
11
70
37
0
3
58
1.16
49773940--49773977
17
2.3
16
86
13
51
76
2
10
10
1.12
49774260--49774308
25
1.9
26
87
4
73
16
12
10
61
1.57
49775179--49775344
44
3.8
44
88
1
244
27
17
25
28
1.98
49775510--49776056
267
2.0
267
90
0
871
28
19
25
25
1.99
49776064--49776225
44
3.6
45
77
10
138
28
21
24
25
1.99
49776064--49776268
44
4.7
43
76
12
132
28
20
24
25
1.99
49776152--49776268
44
2.7
44
85
5
148
29
20
22
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49778022--49778064
23
2.0
22
86
9
61
20
6
6
65
1.41
49778104--49778156
29
1.9
26
85
11
70
37
0
3
58
1.16
49778530--49778578
21
2.3
21
78
0
53
20
2
4
73
1.10
49780582--49780660
38
2.1
38
92
4
133
44
31
8
15
1.77
49786000--49786169
91
1.9
90
81
12
206
49
11
5
33
1.62
49787745--49787783
15
2.6
15
88
8
53
25
10
0
64
1.25
49788741--49788779
15
2.6
15
88
8
53
25
10
0
64
1.25
49787282--49789275
996
2.0
996
100
0
3988
36
14
11
37
1.82
49793756--49793984
24
9.4
24
78
7
196
17
25
20
36
1.94
49793865--49794029
24
6.7
25
83
9
189
21
25
20
32
1.97
49793903--49794042
50
2.8
49
77
12
133
22
24
20
32
1.97
49810381--49810441
32
1.9
32
96
0
113
52
9
11
26
1.68
49817722--49817756
3
11.7
3
100
0
70
34
0
65
0
0.93
49818616--49818641
11
2.4
11
100
0
52
38
7
0
53
1.30
49818627--49818664
20
1.9
20
88
0
58
34
2
0
63
1.09
49818628--49818671
20
2.2
20
83
0
52
31
2
4
61
1.28
49819048--49819143
40
2.3
42
76
3
97
21
29
31
17
1.96
49819307--49819360
22
2.5
22
87
6
74
24
31
0
44
1.54
49819307--49819360
11
4.9
11
76
14
58
24
31
0
44
1.54
49820553--49820578
7
3.7
7
100
0
52
26
0
15
57
1.38
49821229--49821268
18
2.2
18
86
0
53
17
30
7
45
1.76
49821842--49822410
21
26.2
21
80
8
536
46
27
0
25
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49821842--49822410
43
13.1
42
79
9
518
46
27
0
25
1.57
49822265--49822321
26
2.2
25
81
12
62
52
21
0
26
1.47
49822418--49822686
113
2.4
113
98
0
511
40
10
7
41
1.67
49825690--49826135
125
3.6
125
92
0
734
32
22
17
28
1.96
49827087--49827143
24
2.6
20
76
23
53
50
3
1
43
1.29
49827131--49827205
12
6.6
12
69
21
54
52
2
0
45
1.15
49827138--49827188
17
2.8
18
82
11
68
50
1
0
47
1.12
49827067--49827203
45
2.9
47
72
19
131
51
2
0
45
1.21
49831146--49831365
117
1.9
117
86
1
316
15
17
24
43
1.86
49831284--49831426
71
2.0
71
84
0
187
16
17
24
41
1.90
49832104--49832425
161
2.0
161
95
0
572
28
14
22
34
1.93
49832656--49833104
225
2.0
225
97
0
853
34
19
8
37
1.83
49835726--49835785
25
2.4
26
86
8
72
16
25
18
40
1.91
49835733--49835843
25
4.5
25
75
12
95
18
23
21
36
1.95
49836382--49836409
14
2.0
14
100
0
56
14
7
7
71
1.29
49841289--49841321
16
2.1
16
88
11
50
12
12
0
75
1.04
49841288--49841332
24
2.0
21
87
12
63
13
15
0
71
1.15
49845537--49845614
39
2.0
38
85
7
104
46
14
10
29
1.77
49847239--49847364
19
6.8
19
67
15
59
34
2
3
59
1.26
49847280--49847374
10
10.2
9
70
10
50
33
1
2
63
1.13
49851996--49852031
17
2.1
17
100
0
72
16
16
16
50
1.79
49856057--49856099
21
2.0
23
81
9
54
44
11
11
32
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49856129--49856173
21
2.1
23
88
12
69
68
8
8
13
1.38
49862128--49862194
6
10.5
6
76
17
55
20
5
0
73
1.04
49865039--49865258
110
2.0
110
98
0
422
47
21
15
15
1.82
49866589--49866752
34
4.8
34
84
4
213
42
15
23
18
1.89
49866575--49866752
69
2.6
68
85
3
223
42
15
23
19
1.88
49867005--49867042
14
2.8
13
92
7
67
36
10
5
47
1.61
49867136--49867162
14
1.9
14
100
0
54
37
11
7
44
1.68
49867422--49867453
16
2.0
16
93
0
55
43
9
0
46
1.35
49867545--49867580
16
2.2
16
90
0
54
80
5
11
2
0.98
49867761--49867796
16
2.2
16
90
0
54
80
5
11
2
0.98
49867496--49867927
216
2.0
216
100
0
864
45
12
17
25
1.82
49871224--49871258
3
11.7
3
100
0
70
68
0
31
0
0.90
49877964--49878042
34
2.3
35
82
10
99
49
0
3
46
1.19
49879107--49879141
10
3.6
10
88
3
54
74
8
8
8
1.23
49880019--49880188
39
4.2
39
82
10
191
20
19
21
39
1.93
49880050--49880192
45
3.3
43
83
8
168
19
18
21
40
1.91
49880168--49880199
13
2.4
14
85
15
50
28
15
12
43
1.83
49880790--49880818
9
3.2
9
100
0
58
20
0
34
44
1.52
49881860--49881902
5
8.4
5
82
5
50
6
23
0
69
1.12
49883041--49883086
18
2.5
19
86
10
60
41
6
0
52
1.27
49888471--49888499
14
2.0
15
93
6
51
27
3
0
68
1.05
49889105--49889137
18
1.9
17
88
11
50
60
3
3
33
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49893958--49893994
19
1.9
19
100
0
74
32
21
10
35
1.88
49897487--49897712
79
2.9
79
84
0
281
30
10
17
41
1.83
49900180--49900239
6
9.8
6
81
15
70
16
5
0
78
0.92
49912246--49912296
25
2.0
25
100
0
102
41
7
7
43
1.63
49913590--49913633
22
1.9
24
86
9
65
6
25
2
65
1.28
49920672--49920734
22
2.9
22
76
4
65
33
12
14
39
1.84
49927212--49927263
21
2.5
21
84
12
63
42
0
9
48
1.36
49929725--49929749
8
3.1
8
100
0
50
72
0
0
28
0.86
49938225--49938266
22
1.9
22
85
9
59
57
4
2
35
1.33
49948837--49948873
5
7.0
5
88
11
56
0
21
0
78
0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313