Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  208  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63912508--63912884
9
43.4
9
68
16
199
34
2
20
41
1.66
63912497--63912601
25
4.2
25
80
7
122
34
1
19
44
1.61
63912508--63912884
16
21.7
18
69
16
199
34
2
20
41
1.66
63912508--63912656
25
5.8
25
76
9
131
34
2
21
41
1.67
63912508--63912719
52
4.2
51
75
9
172
34
2
22
41
1.67
63912750--63912806
25
2.3
25
84
0
69
29
1
22
45
1.63
63912768--63912883
25
4.6
25
75
12
78
31
2
21
43
1.66
63912591--63912847
41
6.0
42
73
14
134
35
2
21
41
1.67
63912944--63913002
13
4.5
13
91
0
82
45
1
10
42
1.48
63914420--63914460
13
3.2
13
83
13
57
51
9
4
34
1.56
63914501--63914624
60
2.1
60
93
1
214
41
25
8
24
1.84
63919949--63919987
21
1.9
20
94
5
69
25
12
5
56
1.57
63921628--63921667
21
1.9
21
84
0
53
72
10
2
15
1.21
63923148--63923217
22
3.2
22
71
18
74
42
7
8
41
1.63
63923158--63923227
21
3.3
21
72
18
72
44
8
10
37
1.69
63923142--63923227
43
2.0
43
97
0
163
44
8
9
38
1.66
63923863--63923912
23
2.2
23
85
7
66
56
0
2
42
1.11
63924235--63924300
18
3.4
19
71
21
64
50
3
1
45
1.26
63926310--63926341
16
1.9
17
93
6
57
50
0
25
25
1.50
63929792--63929833
22
2.0
22
90
4
68
14
16
4
64
1.45
63929833--63929897
21
3.4
19
75
19
64
46
3
3
47
1.33
63929833--63929898
18
3.5
17
75
16
60
46
3
3
46
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63929938--63930018
23
3.3
23
71
24
76
44
3
3
48
1.38
63930074--63930106
17
2.1
17
88
11
52
60
12
6
21
1.53
63933054--63933115
17
3.6
16
77
12
61
61
0
0
38
0.96
63933320--63933370
25
2.0
25
84
0
66
45
13
1
39
1.55
63938931--63939007
33
2.5
30
82
6
91
58
6
0
35
1.24
63946458--63946482
10
2.5
10
100
0
50
24
0
0
76
0.80
63946782--63946825
23
1.9
22
82
17
54
36
25
0
38
1.56
63946871--63946963
45
2.1
45
87
0
132
31
20
19
29
1.97
63946969--63947155
51
3.7
50
77
7
191
29
28
17
24
1.97
63946967--63947151
101
1.8
102
88
5
286
29
28
17
24
1.97
63951963--63952057
39
2.4
39
82
6
104
30
2
21
46
1.63
63952232--63952677
223
2.0
223
92
2
736
21
10
23
43
1.84
63958444--63958496
17
3.2
17
75
19
58
69
15
3
11
1.31
63968273--63968306
16
2.1
16
88
0
50
50
14
17
17
1.79
63971107--63971147
21
2.0
21
90
0
64
29
21
29
19
1.98
63976723--63976781
18
3.1
19
83
11
68
38
0
6
54
1.27
63994723--63994765
11
4.0
11
82
14
54
25
0
11
62
1.29
63995098--63995139
18
2.3
18
87
0
57
40
2
2
54
1.26
63995578--63995643
19
3.3
20
75
16
57
51
1
1
45
1.19
63995624--63995659
19
1.9
19
88
5
56
55
0
2
41
1.14
64008783--64008862
39
2.0
40
84
15
105
52
3
1
42
1.27
64008782--64008845
19
3.4
17
79
14
65
57
1
1
39
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64011275--64011314
17
2.4
17
86
0
53
60
2
37
0
1.11
64011480--64011531
21
2.5
21
74
0
59
17
0
5
76
0.97
64011494--64011524
16
1.9
16
93
0
53
19
0
6
74
1.03
64011480--64011531
16
3.2
16
75
2
50
17
0
5
76
0.97
64014019--64014099
38
2.1
38
90
0
126
17
48
13
20
1.81
64014344--64014511
48
3.5
48
79
12
177
42
11
10
35
1.75
64018130--64018359
109
2.1
109
84
9
312
59
13
1
25
1.44
64027720--64027939
107
2.1
107
96
0
404
35
19
18
26
1.94
64034743--64034887
77
1.9
77
81
5
177
37
16
22
23
1.94
64040094--64040777
104
6.6
104
97
0
1237
30
30
20
18
1.96
64041113--64041170
30
1.9
30
82
0
71
29
24
8
37
1.85
64052596--64052655
16
3.7
16
80
4
66
73
0
1
25
0.93
64052595--64052670
40
1.9
40
86
5
109
72
1
1
25
1.00
64052595--64052665
16
4.4
16
78
3
52
73
1
1
23
1.00
64052669--64052730
20
2.9
21
71
11
54
59
1
0
38
1.07
64053126--64053207
28
2.9
26
77
15
74
26
1
2
69
1.08
64053145--64053207
29
2.2
28
80
2
72
26
1
1
69
1.06
64054297--64054385
45
2.0
44
97
2
169
34
13
38
13
1.84
64056232--64056263
2
16.0
2
100
0
64
0
50
0
50
1.00
64057502--64057553
24
2.2
24
89
0
77
36
3
9
50
1.54
64061844--64061895
24
2.2
24
86
6
70
36
3
11
48
1.58
64078515--64078543
7
4.3
7
95
4
51
31
0
0
68
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64079278--64079322
22
2.0
24
91
8
76
53
0
22
24
1.46
64083353--64083377
13
1.9
13
100
0
50
28
0
0
72
0.86
64088705--64088969
130
2.1
128
89
2
397
15
13
15
55
1.70
64092509--64092643
49
2.8
49
95
0
234
25
22
20
32
1.97
64092509--64092854
50
6.8
50
85
4
288
23
26
19
29
1.99
64096843--64096893
26
2.0
26
96
0
93
27
21
21
29
1.99
64098940--64099253
40
7.8
40
92
1
438
28
20
25
25
1.99
64098901--64099269
120
3.1
120
88
4
498
27
20
25
26
1.99
64098901--64099253
40
8.8
39
90
2
431
27
20
25
25
1.99
64106459--64106643
40
4.6
39
82
6
203
24
22
27
25
2.00
64106459--64106643
79
2.3
81
82
7
218
24
22
27
25
2.00
64106512--64106676
79
2.1
79
82
6
192
26
20
27
25
1.99
64117802--64118071
40
6.7
40
92
1
441
22
26
20
30
1.98
64118644--64118896
127
2.0
127
99
0
497
26
20
11
41
1.86
64125498--64125523
4
6.5
4
100
0
52
76
0
0
23
0.78
64134966--64135194
81
2.8
81
89
1
334
17
17
24
40
1.91
64134965--64135214
27
9.3
27
86
0
302
18
17
23
40
1.91
64140135--64140171
18
2.0
20
89
10
60
54
0
5
40
1.24
64154247--64154288
6
6.7
6
89
5
57
64
2
4
28
1.26
64166582--64166637
29
1.9
29
96
0
103
23
5
26
44
1.74
64199014--64199080
15
4.5
15
74
12
50
5
17
2
73
1.17
64199028--64199100
19
3.7
20
74
13
62
5
16
2
75
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64199033--64199108
35
2.1
36
85
7
102
6
15
3
73
1.19
64199013--64199100
20
4.5
19
69
21
65
5
17
2
75
1.11
64199041--64199116
36
2.1
34
83
7
89
6
17
3
72
1.22
64202325--64202397
34
2.1
34
97
0
137
27
34
10
27
1.90
64205060--64205102
23
1.9
22
90
4
68
39
9
32
18
1.83
64209985--64210031
22
2.1
22
84
7
60
38
4
0
57
1.18
64213746--64213785
19
2.2
18
91
8
71
10
22
20
45
1.80
64218054--64218119
25
2.7
24
79
9
62
37
3
1
57
1.23
64223813--64223858
16
2.9
16
78
15
51
41
6
17
34
1.75
64223803--64223865
15
4.1
15
75
16
58
39
7
19
33
1.80
64231052--64231099
21
2.2
21
85
3
60
22
14
25
37
1.92
64234042--64234226
79
2.3
82
83
7
229
24
27
22
24
2.00
64234023--64234226
40
5.1
40
81
8
229
24
27
22
25
2.00
64241302--64241488
50
3.8
50
78
0
151
27
21
29
21
1.99
64241301--64241488
100
1.9
99
80
1
223
27
21
29
21
1.99
64242602--64242650
24
2.0
24
92
0
80
36
4
20
38
1.72
64248707--64248748
16
2.7
15
85
7
57
45
0
0
54
0.99
64248705--64248751
22
2.2
22
85
14
64
44
0
0
55
0.99
64249279--64249334
25
2.2
25
84
6
69
35
3
1
58
1.26
64252575--64252600
12
2.2
12
100
0
52
15
0
15
69
1.20
64253157--64253453
50
5.8
50
83
2
308
28
21
27
22
1.99
64261905--64261933
13
2.1
14
93
6
51
68
13
6
10
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64266670--64266851
55
3.5
50
86
9
240
54
14
8
22
1.67
64267917--64267956
19
2.1
19
85
0
53
60
12
0
27
1.33
64270443--64270475
5
6.8
5
86
6
50
0
3
15
81
0.80
64271575--64271631
24
2.4
24
75
0
60
28
21
28
22
1.99
64275925--64275961
15
2.5
15
100
0
74
29
35
0
35
1.58
64280052--64280792
70
10.6
70
83
0
636
26
18
26
28
1.98
64282318--64282621
70
4.4
70
79
2
288
25
19
26
28
1.99
64283097--64283141
22
2.0
22
100
0
90
51
8
13
26
1.70
64287635--64287677
13
3.5
13
75
18
56
48
13
0
37
1.43
64287635--64287686
23
2.3
23
96
0
95
50
13
0
36
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313