Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  94  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31331195--31331260
26
2.5
26
87
0
105
34
25
7
31
1.84
31331855--31331903
20
2.5
20
82
0
53
30
8
6
55
1.54
31332319--31332388
28
2.3
32
81
15
87
40
2
0
57
1.14
31332347--31332389
22
1.9
23
85
4
61
34
2
0
62
1.08
31332339--31332390
14
3.9
14
72
7
54
34
1
0
63
1.06
31332509--31332804
86
3.5
85
84
7
370
32
11
8
47
1.70
31332758--31332782
12
2.1
12
100
0
50
16
0
0
84
0.63
31332916--31332961
22
2.1
22
87
0
65
67
4
0
28
1.10
31335092--31335142
23
2.2
22
80
16
59
41
3
1
52
1.31
31336758--31336849
47
2.0
47
86
0
130
32
6
18
42
1.76
31340965--31340999
18
2.0
17
88
5
52
54
0
0
45
0.99
31340923--31340995
27
2.7
27
76
8
76
52
2
0
45
1.15
31341112--31341146
18
2.0
17
88
5
52
54
0
0
45
0.99
31340884--31341158
147
1.9
149
95
1
500
46
3
2
47
1.35
31341132--31341310
55
3.1
54
64
22
128
49
7
2
41
1.43
31341127--31341314
61
3.1
61
68
14
190
49
6
2
41
1.41
31341232--31341266
18
2.0
17
88
5
52
60
0
0
40
0.97
31341095--31341387
120
2.4
120
91
2
473
50
5
2
40
1.41
31342400--31342431
8
4.0
8
95
0
55
71
15
0
12
1.14
31353236--31353275
22
2.0
21
85
14
57
40
2
12
45
1.56
31357954--31357995
22
1.9
22
85
9
59
38
2
2
57
1.25
31358202--31358256
26
2.1
26
83
6
67
52
0
1
45
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31360849--31360889
9
4.6
9
93
0
73
24
9
21
43
1.83
31365485--31365528
24
2.0
21
82
13
52
54
2
2
40
1.25
31365552--31365600
20
2.7
18
77
22
57
51
4
2
42
1.32
31365552--31365649
37
2.6
38
77
17
100
52
4
3
40
1.36
31365636--31365665
8
3.8
8
100
0
60
50
10
0
40
1.36
31367110--31367150
21
2.0
21
95
4
75
43
26
4
24
1.74
31378752--31378792
21
2.0
21
90
0
64
29
21
29
19
1.98
31384084--31384119
19
1.9
18
88
5
54
41
33
8
16
1.78
31384678--31385199
259
2.0
259
100
0
1044
26
18
21
34
1.96
31394164--31394239
5
14.8
5
75
15
57
36
11
27
23
1.90
31394162--31394229
26
2.6
26
92
0
118
35
10
27
26
1.89
31397330--31397372
23
1.9
22
85
4
59
41
4
4
48
1.44
31397354--31397378
12
2.1
12
100
0
50
40
0
0
60
0.97
31400504--31400550
12
3.8
13
80
8
55
68
0
4
27
1.08
31406946--31406975
15
2.0
15
93
0
51
50
0
10
40
1.36
31413447--31413481
15
2.3
15
90
0
52
57
8
0
34
1.29
31414276--31414316
16
2.6
16
92
0
73
39
0
60
0
0.96
31416175--31416220
20
2.3
20
85
11
67
56
8
2
32
1.42
31416476--31416510
15
2.3
15
90
0
52
57
8
0
34
1.29
31416710--31416779
34
2.1
34
100
0
140
57
5
8
28
1.52
31419344--31419402
13
4.5
13
79
8
57
30
0
0
69
0.89
31419355--31419398
8
5.2
8
80
20
54
25
0
0
75
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31419355--31419401
20
2.4
20
89
3
69
25
0
0
74
0.82
31419361--31419398
10
3.6
11
86
13
62
23
0
0
76
0.79
31422784--31422813
15
2.0
15
93
0
51
50
0
10
40
1.36
31423444--31423581
71
1.9
71
98
0
267
35
21
31
12
1.90
31425220--31425257
18
2.1
18
90
0
58
44
0
31
23
1.54
31426171--31426208
12
3.2
12
88
0
58
44
13
2
39
1.57
31433653--31433691
15
2.5
15
87
4
51
76
0
0
23
0.78
31433653--31433700
8
5.8
8
82
7
60
75
0
0
25
0.81
31433654--31433690
17
2.2
17
95
0
65
81
0
0
18
0.70
31433676--31433752
19
3.8
19
71
20
59
62
1
3
32
1.22
31433742--31433789
24
2.1
22
88
7
69
66
4
6
22
1.32
31433793--31433848
27
2.0
28
86
10
80
44
3
1
50
1.29
31444349--31444382
18
1.9
18
88
5
52
41
0
5
52
1.25
31444448--31444509
20
3.1
20
75
13
65
70
3
0
25
1.02
31451353--31451402
26
1.9
26
83
0
64
52
6
6
36
1.51
31451751--31451813
24
2.5
26
85
10
78
58
4
3
33
1.35
31452043--31452139
29
3.5
28
74
14
76
56
3
10
29
1.48
31454752--31454858
36
2.9
37
76
15
98
57
2
8
30
1.42
31454748--31454836
3
28.7
3
76
10
72
59
2
7
30
1.38
31457436--31457518
41
2.0
41
90
0
130
37
21
9
31
1.86
31461502--31461526
2
12.5
2
100
0
50
48
0
0
52
1.00
31463229--31463283
27
2.0
27
92
0
92
47
7
21
23
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31477796--31477858
30
2.1
30
93
0
108
58
9
4
26
1.49
31481967--31482015
19
2.6
19
81
12
64
69
0
0
30
0.89
31481969--31482028
17
3.3
17
79
15
50
68
0
1
30
0.99
31482523--31482584
30
2.0
31
84
3
81
22
38
0
38
1.54
31482689--31482748
30
2.0
31
87
9
88
20
43
0
36
1.52
31490256--31490315
24
2.5
23
79
12
59
30
3
16
50
1.62
31494898--31494935
19
2.0
19
94
0
67
7
5
5
81
0.98
31495591--31495630
11
3.6
11
82
0
53
60
10
10
20
1.57
31506269--31506297
12
2.3
13
94
5
51
62
3
0
34
1.12
31508077--31508120
18
2.3
20
84
7
56
34
4
2
59
1.30
31513389--31513444
15
4.1
15
69
21
50
39
0
1
58
1.08
31513393--31513450
25
2.3
25
96
0
107
37
0
1
60
1.07
31513393--31513453
13
4.8
13
73
18
58
39
0
1
59
1.08
31514417--31514447
10
3.1
10
100
0
62
58
0
0
41
0.98
31515433--31515467
17
2.2
17
90
10
56
40
0
0
60
0.97
31517048--31517089
16
2.8
16
78
7
52
69
0
4
26
1.08
31517276--31517562
3
95.7
3
71
10
142
59
2
8
29
1.40
31517435--31517500
28
2.4
27
78
12
71
65
3
6
25
1.30
31517506--31517565
28
2.1
28
81
6
68
60
5
5
30
1.40
31517462--31517547
34
2.4
35
75
11
86
58
5
6
29
1.48
31518855--31519245
88
4.4
88
83
1
444
24
23
19
31
1.98
31518891--31519227
44
7.7
44
70
12
183
25
24
19
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31519174--31519795
260
2.4
261
86
2
856
25
22
20
31
1.98
31519174--31519795
130
4.8
129
83
2
733
25
22
20
31
1.98
31531670--31531905
3
78.0
3
69
12
128
61
2
6
28
1.36
31531778--31531843
28
2.4
27
78
12
71
65
3
6
25
1.30
31531849--31531908
28
2.1
28
81
6
68
60
5
5
30
1.40
31531805--31531890
34
2.4
35
75
11
86
58
5
6
29
1.48
31536835--31536882
19
2.5
20
86
6
71
31
2
4
62
1.26
31548120--31548718
298
2.0
298
94
0
1054
36
19
18
25
1.94
31549704--31549744
21
2.0
20
85
9
55
29
9
4
56
1.53
31558235--31558274
21
2.0
21
85
5
55
25
30
32
12
1.92
31559555--31559684
49
2.7
49
90
2
190
23
28
19
29
1.98
31563942--31564129
26
7.2
26
98
0
358
35
26
6
31
1.82
31570002--31570044
20
2.1
20
83
12
52
51
13
25
9
1.71
31588055--31588091
14
2.6
14
95
4
65
13
32
18
35
1.90
31597066--31597108
3
14.3
3
90
0
68
30
2
2
65
1.18
31608722--31608832
47
2.3
49
83
11
149
27
9
29
34
1.87
31615252--31615340
18
4.9
18
83
0
115
33
14
22
29
1.94
31615253--31615340
36
2.4
36
86
0
131
34
14
21
29
1.93
31625603--31625648
16
2.9
16
84
9
60
54
0
4
41
1.20
31638924--31639000
31
2.5
31
89
0
109
45
16
15
22
1.85
31639139--31639196
30
2.0
29
83
6
73
27
12
12
48
1.76
31645490--31645582
18
5.2
18
90
0
150
31
16
24
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31645490--31645582
36
2.6
36
94
0
168
31
16
24
27
1.96
31648070--31648108
3
12.7
3
94
5
69
66
0
0
33
0.92
31651024--31651083
32
1.9
32
87
12
90
53
0
3
43
1.17
31651034--31651091
23
2.5
24
83
8
77
55
0
3
41
1.17
31654338--31654389
10
5.2
10
73
17
54
57
1
0
40
1.10
31654337--31654418
20
4.2
20
86
7
114
57
2
0
40
1.12
31654343--31654427
40
2.1
40
81
12
95
56
5
0
37
1.24
31654437--31654497
10
6.0
10
73
17
54
62
1
3
32
1.21
31655270--31655303
12
2.9
12
86
4
52
32
0
0
67
0.91
31655412--31655474
30
2.1
30
93
0
108
57
11
3
28
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313