genome.fa.s26.2.7.7.80.10.50.1000.305.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  305  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93707568--93707594	11	2.5	11	100	0	54	33	18	18	29	1.95
93712286--93712358	23	3.2	23	92	0	128	30	24	21	23	1.99
93712445--93712473	8	3.6	8	100	0	58	34	27	13	24	1.93
93719316--93719364	22	2.2	22	88	3	71	42	22	6	28	1.77
93719347--93719396	22	2.3	22	82	6	66	48	12	14	26	1.78
93736734--93736766	9	3.7	9	100	0	66	39	12	12	36	1.80
93748999--93749072	35	2.1	35	82	9	89	28	21	18	31	1.97
93750891--93750943	22	2.4	22	74	0	52	71	0	7	20	1.10
93751092--93751214	61	2.0	62	96	1	230	34	16	11	38	1.84
93751957--93751986	15	2.0	15	93	0	51	66	3	0	30	1.07
93753304--93753386	20	4.1	19	76	11	67	39	1	3	55	1.25
93755786--93755820	7	4.7	7	86	13	52	11	2	40	45	1.55
93758421--93758492	30	2.3	30	88	9	101	36	5	12	45	1.65
93758436--93758500	30	2.2	30	83	8	80	43	3	16	36	1.64
93767149--93767311	60	2.7	62	81	9	176	28	17	23	29	1.97
93769528--93769651	43	2.9	43	83	7	153	23	14	28	33	1.94
93772944--93773209	40	6.7	40	88	3	333	24	22	26	26	2.00
93787178--93789334	422	5.0	427	69	18	1449	36	14	9	39	1.79
93790411--93790481	22	3.2	22	84	7	90	45	22	7	25	1.77
93794104--93794144	20	2.0	21	85	4	57	26	7	14	51	1.69
93795847--93795902	23	2.5	23	88	2	78	12	23	8	55	1.65
93795917--93795982	28	2.3	29	84	5	91	21	27	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93799671--93799711	18	2.3	18	95	0	73	58	0	9	31	1.31
93800059--93800133	14	5.3	14	73	10	55	64	0	4	32	1.12
93800115--93800148	17	2.0	17	88	11	52	64	0	8	26	1.22
93801788--93802546	206	3.7	206	90	1	1133	28	21	18	31	1.97
93822901--93822935	18	2.0	18	88	5	54	28	14	20	37	1.91
93824206--93824307	29	3.6	29	81	6	127	29	27	12	30	1.93
93825223--93825257	18	2.0	18	88	5	54	28	14	20	37	1.91
93826300--93826401	29	3.6	29	81	6	127	29	27	12	30	1.93
93827805--93827847	21	2.0	22	82	13	54	41	13	0	44	1.44
93828492--93828551	15	3.9	15	79	12	68	58	5	3	33	1.36
93828585--93828652	17	3.9	17	69	23	52	67	7	1	23	1.24
93832038--93832235	40	4.8	40	80	8	225	23	29	22	24	1.99
93832038--93832235	82	2.4	84	84	5	242	23	29	22	24	1.99
93835013--93835143	65	2.0	65	98	0	253	26	27	19	26	1.99
93840681--93840873	40	4.8	40	88	2	278	23	29	22	24	1.99
93840681--93840873	82	2.4	82	90	1	291	23	29	22	24	1.99
93848968--93849016	3	16.3	3	91	0	80	69	2	28	0	1.00
93857621--93857771	27	5.6	27	80	9	164	41	19	8	30	1.82
93857621--93857775	81	1.9	82	81	6	190	40	20	8	30	1.82
93857622--93857790	54	3.1	50	75	14	126	40	19	9	30	1.83
93857783--93857910	27	4.7	27	88	0	193	30	24	7	38	1.82
93857758--93857937	54	3.3	54	76	12	138	35	21	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93857756--93857937	81	2.2	82	77	8	201	35	21	7	35	1.82
93857823--93857955	54	2.4	54	82	1	140	34	22	7	35	1.83
93857919--93858016	27	3.6	27	78	0	106	44	19	8	27	1.79
93857972--93858044	27	2.7	27	84	0	83	36	21	10	30	1.88
93858029--93858386	27	13.3	27	90	0	518	34	19	21	24	1.96
93858791--93858886	25	3.6	25	76	15	93	18	20	15	44	1.86
93858788--93858856	31	2.2	31	94	0	120	20	18	15	44	1.86
93858798--93858855	19	3.4	19	65	30	58	18	20	17	43	1.89
93858788--93858900	6	18.3	6	68	21	65	19	19	15	46	1.85
93861810--93861897	25	3.6	25	71	13	83	31	19	21	27	1.97
93861810--93861907	24	4.0	24	77	6	90	34	18	20	26	1.95
93862944--93863055	27	4.1	27	82	10	131	38	23	23	15	1.92
93862948--93863054	54	2.0	54	87	3	153	39	22	22	15	1.92
93865968--93866006	20	2.0	19	85	5	51	38	12	12	35	1.82
93869047--93869317	47	5.8	45	78	9	251	24	29	18	26	1.98
93869047--93869316	94	2.9	92	79	10	282	24	30	18	27	1.98
93869047--93869311	140	1.9	141	86	6	378	24	29	18	27	1.98
93873803--93873873	34	2.1	34	100	0	142	29	26	11	32	1.91
93876194--93876380	50	3.8	49	80	7	207	28	27	18	25	1.98
93876205--93876391	101	1.9	99	84	4	250	28	28	17	25	1.98
93880979--93881173	51	3.8	51	86	1	275	29	24	11	33	1.91
93881209--93881308	24	4.0	24	81	10	128	23	22	15	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93881197--93881309	52	2.2	52	93	3	192	23	24	14	38	1.92
93882788--93882963	46	3.8	46	78	12	207	20	20	29	29	1.98
93882785--93882956	93	1.8	93	94	0	308	20	20	29	28	1.98
93894760--93894829	35	2.0	35	94	0	122	20	25	8	45	1.79
93897570--93897765	51	3.8	51	89	1	295	30	23	13	32	1.93
93897807--93897955	24	5.9	24	78	12	154	23	22	14	38	1.91
93897792--93897966	52	3.4	52	89	1	253	24	25	13	36	1.92
93911895--93912002	27	4.0	26	83	8	126	37	21	23	18	1.95
93911895--93912002	54	2.0	54	89	3	164	37	21	23	18	1.95
93912108--93912183	27	2.9	27	77	11	77	31	14	21	32	1.93
93915018--93915092	38	2.0	37	97	0	132	18	33	16	30	1.93
93920737--93921646	40	22.8	40	98	0	1739	24	27	20	27	1.99
93923883--93923994	27	4.2	26	85	7	143	36	22	24	16	1.94
93923883--93923994	54	2.1	54	88	3	163	36	22	24	16	1.94
93926904--93926958	23	2.6	21	74	23	60	27	3	12	56	1.53
93927056--93927157	42	2.4	42	83	3	134	28	19	26	25	1.99
93927442--93927472	3	10.3	3	92	0	53	32	3	0	64	1.09
93929201--93929262	26	2.3	27	86	10	92	37	27	8	27	1.85
93929372--93929480	27	4.0	27	85	5	141	19	23	21	35	1.96
93929367--93929480	55	2.1	53	85	6	149	19	23	20	36	1.95
93933173--93933234	26	2.3	27	83	10	83	37	29	8	25	1.85
93933340--93933479	27	5.2	27	85	4	158	20	22	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93933339--93933474	54	2.5	54	85	3	175	21	22	19	37	1.94
93936921--93937092	42	4.0	43	71	12	113	35	25	13	25	1.93
93951908--93952065	80	2.0	81	82	6	196	32	21	8	37	1.83
93953196--93953234	7	5.7	7	96	3	71	12	0	0	87	0.55
93954066--93954139	29	2.6	29	86	0	103	21	18	29	29	1.97
93954679--93954729	25	2.0	25	96	0	93	17	7	27	47	1.75
93965491--93965622	40	3.3	39	85	5	176	27	27	21	24	1.99
93966669--93966907	120	2.0	120	100	0	478	33	28	15	21	1.95
93968138--93968321	79	2.3	81	82	11	222	25	27	22	25	2.00
93968138--93968321	40	4.6	41	83	12	199	25	27	22	25	2.00
93975296--93975596	150	2.0	150	99	0	593	25	22	10	41	1.85
93976238--93976501	40	6.7	40	89	5	351	25	27	21	25	1.99
93976821--93976924	52	2.0	52	88	0	154	42	20	14	23	1.88
93981499--93981598	12	8.8	11	70	16	62	58	0	5	37	1.20
93981518--93981598	3	27.0	3	70	14	51	60	0	4	34	1.18
93981543--93981593	15	3.2	15	76	15	57	60	0	3	35	1.15
93982980--93983023	21	2.1	21	83	8	54	75	0	2	22	0.92
93988265--93988561	43	7.0	44	81	9	346	30	27	16	24	1.97
93988265--93988561	129	2.3	127	91	1	468	30	27	16	24	1.97
93995327--93995423	48	2.0	48	87	0	140	19	27	6	46	1.74
94012652--94013518	213	4.2	212	84	6	1109	34	13	19	32	1.90
94012652--94013254	71	8.5	71	92	2	975	35	13	19	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94013340--94013518	71	2.5	71	96	0	322	38	14	17	29	1.90
94013075--94013641	264	2.1	265	94	1	1012	33	13	19	33	1.91
94013605--94013842	91	2.7	88	80	10	263	28	18	18	34	1.95
94013605--94013857	85	2.9	88	78	10	270	27	18	17	36	1.93
94013964--94014181	54	4.1	55	88	8	324	28	16	17	37	1.92
94014457--94014558	30	3.4	30	84	2	134	29	22	3	44	1.71
94015502--94015611	17	6.2	17	71	7	85	30	13	11	43	1.80
94015551--94015628	35	2.2	35	79	4	95	30	11	12	44	1.78
94015503--94015635	18	7.6	17	71	16	87	29	12	13	45	1.80
94015749--94015787	21	1.9	20	89	5	60	38	12	10	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313