genome.fa.s26.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  171  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53344314--53344397	24	3.4	26	76	15	88	30	25	27	16	1.97
53344338--53344457	25	4.7	25	74	12	102	33	23	26	16	1.96
53344496--53344554	24	2.4	25	83	8	68	35	22	27	15	1.94
53344517--53344587	25	2.8	25	82	0	79	33	19	28	18	1.95
53344748--53344800	21	2.5	23	76	17	60	50	11	0	37	1.38
53346524--53346557	3	11.3	3	87	0	50	29	0	5	64	1.17
53348779--53348816	20	1.9	20	94	0	67	31	5	36	26	1.79
53351556--53351624	31	2.2	31	82	5	77	44	17	10	27	1.80
53358626--53358656	14	2.2	14	100	0	62	12	12	12	61	1.58
53360136--53360176	11	3.5	11	81	18	55	63	0	2	34	1.08
53360595--53360655	33	1.9	31	86	6	86	21	3	8	67	1.32
53368968--53369099	57	2.3	57	86	0	183	17	18	22	40	1.91
53369115--53369164	22	2.3	22	86	3	66	20	20	24	36	1.95
53369126--53369172	22	2.2	21	85	7	60	21	23	21	34	1.97
53373653--53373740	44	2.0	44	82	8	108	17	25	21	36	1.94
53373753--53373797	16	2.8	16	79	0	54	20	26	24	28	1.99
53387444--53387626	59	3.0	60	71	15	178	42	1	3	52	1.26
53387526--53387660	18	8.0	17	70	19	95	40	0	1	57	1.13
53387405--53387626	120	1.9	120	98	0	426	41	0	3	53	1.24
53387541--53387680	26	5.5	25	68	20	85	42	0	2	55	1.17
53387554--53387609	15	4.0	15	73	17	57	44	0	0	55	0.99
53387404--53387645	41	6.0	41	69	22	138	41	0	3	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53387817--53387914	45	2.2	45	87	1	135	32	29	5	32	1.79
53387893--53387962	16	4.4	16	96	0	104	32	35	0	31	1.58
53388161--53388233	32	2.3	32	76	9	76	58	16	9	15	1.61
53404542--53404593	20	2.5	20	84	12	61	44	0	1	53	1.11
53406474--53406720	27	9.1	27	85	1	325	20	18	19	41	1.90
53406474--53406720	81	3.0	81	86	2	361	20	18	19	41	1.90
53409251--53409301	18	2.8	17	82	11	66	62	3	3	29	1.31
53409279--53409334	20	2.8	20	75	8	60	69	1	1	26	1.08
53413643--53413712	25	2.8	25	88	0	113	18	25	21	34	1.96
53413644--53413741	50	2.0	50	83	4	126	23	24	19	32	1.97
53419299--53419328	14	2.1	14	100	0	60	23	6	30	40	1.80
53421100--53421209	25	4.3	25	78	6	103	20	24	20	33	1.97
53421107--53421208	53	1.9	53	87	0	150	19	22	21	36	1.95
53421179--53421246	25	2.7	25	74	17	68	27	25	19	27	1.98
53426589--53426789	102	2.0	102	90	2	314	21	17	27	32	1.96
53426666--53426902	33	6.8	33	70	22	139	21	19	27	31	1.97
53426689--53426892	75	2.7	76	93	0	329	22	17	28	32	1.96
53426689--53426900	76	2.8	75	92	0	334	22	18	27	31	1.97
53434086--53434286	102	2.0	102	93	0	348	19	19	28	31	1.97
53434186--53434397	76	2.8	75	93	0	352	21	19	27	30	1.98
53437114--53437156	6	7.2	6	83	0	59	76	4	0	18	0.95
53449180--53449221	20	2.0	21	86	4	59	33	2	21	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53450844--53450874	12	2.6	12	94	0	53	32	41	19	6	1.77
53455381--53455445	25	2.5	25	90	5	94	27	4	7	60	1.44
53455407--53455468	27	2.3	26	83	8	72	27	6	4	61	1.41
53461680--53461716	19	2.0	19	89	5	58	48	18	5	27	1.70
53461681--53461722	19	2.2	19	83	8	50	52	14	4	28	1.62
53466442--53466501	29	2.1	29	93	0	102	31	20	16	31	1.95
53469878--53469995	34	3.5	34	82	3	123	21	15	29	33	1.94
53470574--53470647	33	2.2	33	100	0	148	31	5	25	37	1.79
53477580--53477835	41	6.2	41	90	2	381	16	19	26	37	1.93
53477536--53477835	123	2.5	123	88	5	427	16	19	27	36	1.93
53477536--53477875	123	2.8	123	84	7	362	17	19	26	36	1.94
53478174--53478249	23	3.3	23	71	23	77	27	2	21	48	1.63
53482428--53482485	29	2.0	29	100	0	116	31	24	3	41	1.71
53482614--53482662	16	2.9	16	80	11	53	38	14	2	44	1.56
53482613--53482669	9	6.7	9	76	9	57	42	12	1	43	1.52
53482636--53482667	16	2.0	16	93	0	55	46	12	0	40	1.42
53486693--53486754	28	2.2	29	91	5	108	24	20	22	32	1.98
53486817--53487467	324	2.0	324	97	0	1239	32	17	21	28	1.96
53488744--53488962	43	5.1	43	91	1	307	28	18	26	26	1.98
53493590--53493623	17	1.9	18	88	5	52	29	2	2	64	1.22
53494037--53494222	41	4.5	41	88	6	254	22	19	30	27	1.98
53494037--53494275	82	2.9	81	82	4	250	22	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53495625--53495896	43	6.3	43	82	3	298	23	18	30	27	1.98
53495647--53495899	129	2.0	129	87	1	364	22	18	30	28	1.97
53498101--53498154	21	2.6	19	77	11	54	37	3	7	51	1.48
53498641--53498670	16	1.9	16	93	6	53	33	0	13	53	1.40
53500693--53500723	2	15.5	2	100	0	62	48	0	0	51	1.00
53501081--53501105	13	1.9	13	100	0	50	48	0	8	44	1.32
53504630--53504733	26	4.0	27	82	5	108	20	20	21	38	1.94
53506765--53506798	17	2.0	17	94	0	59	38	0	0	61	0.96
53509435--53509482	24	2.0	24	91	0	78	33	4	10	52	1.55
53511314--53511451	70	2.0	68	87	5	197	37	17	15	29	1.90
53511834--53511891	25	2.3	26	78	3	64	50	0	10	39	1.37
53511877--53511911	11	3.3	11	92	8	63	62	0	0	37	0.95
53511877--53511936	23	2.8	21	80	14	77	61	0	1	36	1.06
53513673--53513702	2	15.0	2	100	0	60	50	0	50	0	1.00
53515186--53515246	9	6.4	9	77	5	50	29	4	0	65	1.13
53518126--53518164	15	2.6	14	84	11	51	41	2	0	56	1.13
53519146--53519207	31	2.0	32	84	6	83	45	11	9	33	1.73
53520964--53521068	9	11.7	9	69	11	63	67	1	2	27	1.15
53521000--53521068	28	2.6	26	93	6	113	69	2	0	27	1.02
53524482--53524510	14	2.0	15	93	6	51	37	6	27	27	1.82
53525569--53525674	41	2.6	41	78	0	104	16	19	37	25	1.93
53528143--53528183	20	2.0	20	90	0	64	26	2	17	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53528264--53528314	20	2.5	20	90	0	75	17	13	13	54	1.70
53529380--53529455	11	6.8	11	72	21	52	53	3	2	39	1.33
53531564--53531772	33	5.7	33	70	21	132	32	25	19	22	1.97
53531602--53531739	42	3.5	41	71	20	132	32	26	18	23	1.97
53531565--53531784	76	2.9	76	89	3	320	31	25	18	24	1.97
53533692--53533722	16	1.9	16	93	0	53	70	9	9	9	1.33
53537552--53537591	20	2.0	20	85	0	53	30	5	5	60	1.40
53540074--53540103	5	6.2	5	92	7	53	63	0	0	36	0.95
53542017--53542060	21	2.1	21	100	0	88	38	25	9	27	1.86
53543116--53543337	42	5.3	42	85	1	295	15	25	27	32	1.95
53543116--53543437	41	7.8	42	79	2	292	16	24	26	32	1.96
53545483--53545539	25	2.4	22	80	13	60	19	42	1	36	1.62
53545515--53545553	16	2.6	15	84	11	53	23	35	5	35	1.77
53545775--53545842	33	2.1	33	94	0	118	32	2	29	35	1.73
53546083--53546120	17	2.2	17	95	0	67	10	36	13	39	1.79
53547592--53547644	24	2.2	24	96	0	97	43	3	3	49	1.38
53547751--53547796	22	2.1	22	88	8	67	45	10	4	39	1.59
53547807--53547852	22	2.1	22	91	0	74	47	10	2	39	1.51
53547829--53548037	34	6.7	34	68	18	150	48	10	2	38	1.53
53547863--53547908	22	2.1	22	91	0	74	47	10	2	39	1.51
53547929--53548157	9	26.7	9	65	18	60	44	13	3	38	1.60
53547736--53547942	56	3.7	56	99	0	405	47	11	2	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53547829--53548037	96	2.3	90	89	5	310	48	10	2	38	1.53
53548037--53548115	34	2.3	34	80	0	86	43	13	1	41	1.53
53548159--53548214	25	2.2	25	83	0	67	44	14	5	35	1.68
53548195--53548228	16	2.1	16	94	0	59	52	14	0	32	1.42
53553656--53553826	66	2.6	65	85	4	209	39	19	27	13	1.89
53553798--53553909	21	5.3	21	80	4	82	37	17	41	3	1.67
53553808--53553909	42	2.4	42	86	0	132	38	17	41	2	1.65
53554611--53554660	24	2.1	24	92	0	82	12	14	14	60	1.60
53557268--53557726	105	4.4	105	80	4	451	32	14	23	30	1.94
53572279--53572411	60	2.2	60	89	2	196	13	23	30	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313