genome.fa.s26.2.7.7.80.10.50.1000.240.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  240  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74234423--74234501	30	2.6	30	77	15	74	25	12	16	45	1.82
74243638--74243672	11	3.2	11	92	8	54	65	17	0	17	1.27
74244591--74244656	29	2.3	29	87	5	100	54	3	7	34	1.44
74251533--74251757	80	2.8	79	81	3	236	24	21	27	26	1.99
74251533--74251757	40	5.7	38	78	11	184	24	21	27	26	1.99
74251608--74251790	79	2.3	80	80	1	208	26	21	26	25	1.99
74257268--74257322	20	2.8	20	81	10	67	47	20	20	12	1.82
74262934--74263335	201	2.0	201	96	0	732	33	16	14	35	1.89
74265743--74265783	17	2.3	18	80	12	50	68	4	2	24	1.22
74267665--74267718	21	2.4	22	81	9	56	72	9	1	16	1.19
74272330--74272362	17	1.9	17	88	11	50	18	9	6	66	1.40
74273713--74273826	61	1.9	58	89	5	174	42	1	5	50	1.35
74273719--74273848	58	2.2	61	82	9	153	42	3	6	48	1.43
74276968--74278032	259	4.1	259	94	0	1833	30	15	18	34	1.93
74278119--74278342	5	45.0	5	97	0	414	40	0	0	58	1.04
74280956--74281098	41	3.4	42	77	7	148	36	25	15	22	1.93
74281126--74281210	41	2.1	41	88	0	125	24	24	17	32	1.97
74284235--74284302	15	4.2	16	73	12	68	73	2	19	4	1.13
74284238--74284314	16	4.8	16	76	12	52	70	2	23	3	1.17
74284991--74285030	2	20.0	2	100	0	80	0	0	50	50	1.00
74288819--74288862	23	1.9	23	100	0	88	54	11	25	9	1.65
74302617--74302665	13	3.8	13	83	0	71	30	8	26	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74306741--74306797	16	3.6	16	92	0	78	31	0	35	33	1.58
74307043--74307077	18	2.0	17	88	5	52	54	0	0	45	0.99
74312173--74312294	46	2.6	46	80	1	136	29	17	22	30	1.97
74314991--74315962	47	20.6	47	96	0	1746	27	29	8	33	1.87
74319085--74319288	103	2.0	103	92	1	338	18	18	28	34	1.95
74319189--74319364	76	2.3	76	92	1	282	19	20	28	31	1.97
74319086--74319424	179	1.9	178	85	3	475	17	20	29	32	1.96
74329743--74329883	75	1.9	75	89	0	219	36	22	2	38	1.69
74340133--74340181	25	2.0	25	100	0	98	22	12	12	53	1.71
74341193--74341236	18	2.4	18	80	0	52	36	6	29	27	1.83
74342532--74342581	20	2.5	20	81	12	66	12	24	6	58	1.56
74342757--74342941	50	3.7	49	76	7	151	23	27	21	28	1.99
74343904--74344418	47	11.0	47	96	1	919	40	14	19	25	1.90
74345236--74345359	43	2.9	43	78	9	137	29	28	20	21	1.98
74352234--74352769	46	11.6	46	93	0	894	39	13	19	27	1.89
74353590--74353715	43	2.9	43	77	16	152	30	27	19	22	1.98
74358798--74358939	25	5.7	25	76	5	144	26	20	21	30	1.98
74366512--74366554	18	2.4	18	88	0	68	27	18	16	37	1.92
74369690--74369730	18	2.2	19	91	4	66	34	12	0	53	1.38
74374865--74374915	24	2.1	24	85	3	66	29	0	1	68	1.00
74381500--74381820	94	3.4	94	79	3	308	29	17	27	25	1.98
74392898--74392936	21	1.9	21	89	5	62	61	5	2	30	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74398219--74398262	23	1.9	23	95	0	79	38	11	4	45	1.61
74399289--74399362	39	1.9	38	86	8	105	33	29	14	21	1.94
74403996--74404113	20	5.9	20	77	5	96	42	20	25	11	1.86
74403996--74404095	40	2.5	40	83	0	128	42	22	24	12	1.87
74403978--74404113	40	3.4	40	71	8	96	42	19	25	12	1.86
74405067--74405201	69	1.9	70	92	1	227	33	6	5	54	1.51
74410840--74410871	17	1.9	17	93	6	57	56	0	0	43	0.99
74414574--74414752	56	3.1	57	89	5	256	28	20	6	44	1.77
74416691--74416840	80	1.9	80	87	0	219	28	24	16	30	1.96
74416694--74416873	40	4.5	40	80	7	179	29	24	15	31	1.95
74422202--74422379	27	6.6	27	81	3	169	28	29	15	26	1.96
74422223--74422378	82	1.9	81	85	3	215	28	29	16	26	1.96
74425827--74425976	74	2.0	74	89	0	228	29	24	14	32	1.94
74426353--74426391	19	2.2	18	86	9	53	79	7	5	7	1.05
74433637--74433705	27	2.5	28	79	11	72	2	26	2	68	1.18
74438192--74438227	18	2.0	18	88	0	54	33	5	5	55	1.46
74443227--74443284	30	1.9	30	85	0	80	27	29	29	13	1.94
74445866--74445897	13	2.4	14	94	5	57	46	9	0	43	1.35
74448867--74448909	22	2.0	22	85	0	59	55	2	11	30	1.48
74450526--74450583	25	2.3	25	87	3	80	58	8	3	29	1.44
74451221--74451706	245	2.0	245	99	0	963	23	26	18	31	1.97
74456581--74456765	79	2.3	81	84	7	236	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74456581--74456765	40	4.7	40	83	7	234	25	27	22	24	2.00
74464472--74464656	79	2.3	81	84	7	236	25	27	22	24	2.00
74464472--74464656	40	4.7	40	83	7	234	25	27	22	24	2.00
74471453--74471505	13	4.1	13	85	0	79	28	7	28	35	1.84
74474699--74474870	40	4.3	40	88	2	222	25	27	21	25	1.99
74474701--74474923	40	5.6	39	83	5	216	25	27	21	25	1.99
74474699--74474923	80	2.8	79	80	7	240	25	27	21	25	1.99
74474855--74474932	40	1.9	41	82	10	97	26	28	20	24	1.99
74482633--74482895	40	6.6	39	86	4	278	25	27	21	25	1.99
74482633--74482895	120	2.2	119	82	4	307	25	27	21	25	1.99
74482827--74482904	40	1.9	41	82	10	97	26	28	20	24	1.99
74489955--74489985	2	15.5	2	100	0	62	0	48	0	51	1.00
74493081--74493380	81	3.7	82	78	17	279	46	9	12	32	1.74
74493144--74493380	81	2.9	80	85	5	300	46	9	12	31	1.73
74493145--74493472	162	2.0	167	82	5	400	46	9	12	32	1.73
74493328--74493636	87	3.7	79	79	11	255	43	9	14	32	1.78
74493166--74493636	165	2.9	166	79	6	401	44	9	14	32	1.76
74493750--74493797	23	2.1	22	88	11	71	70	0	0	29	0.87
74494390--74494426	11	3.4	11	100	0	74	40	8	0	51	1.32
74494675--74494724	20	2.5	20	90	0	73	56	10	4	30	1.51
74499631--74499697	21	3.2	22	72	16	61	43	16	23	16	1.87
74504624--74504755	67	2.0	67	95	0	237	19	17	34	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74506326--74506423	49	2.0	51	89	4	155	24	14	28	32	1.94
74513607--74513631	13	1.9	13	100	0	50	32	4	24	40	1.73
74515774--74515803	13	2.3	13	94	0	51	10	0	23	66	1.21
74517916--74517987	21	3.4	21	77	7	83	40	19	25	15	1.90
74519157--74519259	52	2.0	52	100	0	206	43	17	5	33	1.73
74525363--74525411	25	2.1	23	85	14	66	65	0	4	30	1.11
74525427--74525485	29	2.1	27	81	12	66	55	1	6	35	1.36
74525550--74525625	30	2.6	28	80	10	73	40	6	1	51	1.36
74526009--74526053	18	2.4	20	89	10	69	40	2	0	57	1.11
74526011--74526053	10	4.7	9	81	16	52	39	2	0	58	1.11
74526003--74526056	15	3.2	16	78	19	56	46	1	0	51	1.11
74532307--74532739	215	2.0	215	99	0	848	33	17	8	40	1.79
74535561--74535592	13	2.5	13	94	0	55	31	0	12	56	1.37
74535687--74535884	56	3.6	56	84	7	221	27	23	25	22	2.00
74537543--74537605	20	3.1	21	80	11	69	41	19	28	11	1.85
74538878--74538916	21	1.9	20	84	5	51	56	5	25	12	1.57
74543794--74543832	14	2.8	14	80	0	51	35	10	20	33	1.86
74544402--74544437	18	1.9	18	88	5	54	58	2	0	38	1.13
74546328--74546368	21	2.0	21	85	0	55	31	0	9	58	1.31
74548985--74549032	25	1.9	25	91	0	78	22	20	22	33	1.97
74549059--74549438	188	2.0	188	92	0	634	33	10	23	32	1.89
74549567--74549596	15	2.0	15	100	0	60	33	20	26	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74554723--74554841	23	5.2	23	78	0	130	32	26	16	24	1.96
74554730--74554841	46	2.4	46	87	0	152	33	25	16	24	1.96
74555070--74555108	18	2.2	17	86	13	53	46	20	0	33	1.51
74558341--74558384	12	3.7	12	84	0	52	18	2	6	72	1.17
74558341--74558384	18	2.4	18	88	0	61	18	2	6	72	1.17
74558782--74558831	20	2.4	21	90	10	84	12	0	28	60	1.32
74571802--74571985	38	4.7	37	70	17	131	43	1	4	51	1.29
74571811--74572002	56	3.3	55	73	19	199	42	1	3	52	1.25
74571839--74572022	56	3.0	65	69	19	203	43	0	3	52	1.23
74571784--74572022	120	2.0	120	99	0	469	43	0	4	51	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313