genome.fa.s26.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  222  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68380660--68380717	22	2.6	22	81	7	64	41	17	5	36	1.72
68380673--68380743	21	3.4	20	82	11	72	40	14	8	36	1.76
68407511--68407565	15	3.8	15	85	2	69	1	21	1	74	1.01
68412359--68412400	22	1.9	22	95	0	75	23	7	0	69	1.13
68415125--68415445	107	3.0	107	100	0	642	30	19	9	40	1.83
68417263--68417310	20	2.4	20	100	0	96	54	4	14	27	1.59
68417263--68417317	20	2.8	20	91	2	67	58	3	12	25	1.51
68417280--68417323	20	2.2	20	83	0	52	54	2	15	27	1.53
68422659--68422843	79	2.3	81	82	7	218	24	26	22	25	2.00
68422640--68422843	40	5.1	40	79	8	202	24	26	22	26	2.00
68428998--68429070	23	3.2	23	88	0	110	28	24	21	24	1.99
68429157--68429185	8	3.6	8	100	0	58	34	27	13	24	1.93
68429304--68429342	18	2.2	17	86	13	53	46	20	0	33	1.51
68440771--68441037	81	3.3	81	85	1	356	40	22	19	18	1.92
68440771--68441037	27	9.9	27	85	0	309	40	22	19	18	1.92
68447042--68447333	146	2.0	146	92	2	489	27	23	23	24	2.00
68447321--68447810	27	18.3	27	84	1	473	42	19	18	18	1.89
68447321--68447810	107	4.6	107	80	3	502	42	19	18	18	1.89
68449763--68449815	25	2.1	26	85	3	72	41	7	9	41	1.66
68449914--68449944	6	5.2	6	100	0	62	16	0	0	83	0.64
68456888--68456954	33	2.0	33	94	0	116	38	20	20	19	1.93
68458278--68458306	14	2.1	14	100	0	58	6	31	13	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68464770--68464833	28	2.3	28	83	0	92	32	23	17	26	1.96
68485331--68485359	12	2.3	13	94	5	51	65	6	6	20	1.40
68486986--68487042	23	2.4	23	82	2	78	71	8	0	19	1.11
68487006--68487038	8	4.2	8	84	7	50	63	12	0	24	1.28
68486994--68487068	27	3.1	24	75	15	75	66	12	0	21	1.23
68495044--68495073	3	10.0	3	92	0	51	63	0	3	33	1.11
68495637--68495675	16	2.7	16	85	14	50	61	0	0	38	0.96
68495780--68495817	14	2.4	17	87	12	55	52	0	0	47	1.00
68495797--68495835	12	3.4	11	80	13	51	46	2	0	51	1.14
68497250--68497291	6	7.0	6	78	10	50	16	4	0	78	0.91
68497250--68497297	23	2.0	25	92	8	82	14	8	0	77	0.99
68498646--68498685	20	2.1	20	86	9	57	25	5	10	60	1.49
68501843--68502444	87	6.9	87	88	0	866	24	23	22	30	1.99
68502166--68502303	44	3.2	44	66	13	113	26	25	22	25	2.00
68503676--68503729	7	8.0	7	91	4	85	14	27	0	57	1.38
68504636--68504713	40	1.9	41	92	2	131	8	8	10	71	1.30
68514029--68514162	6	21.8	6	93	3	169	17	5	0	76	0.97
68515086--68515343	29	8.9	29	79	4	196	36	13	24	24	1.92
68528597--68529084	120	4.1	120	94	3	851	42	1	4	52	1.30
68528791--68528828	18	2.2	17	90	4	58	34	2	0	63	1.09
68529032--68529064	16	2.0	17	94	5	59	39	0	0	60	0.97
68529222--68529317	45	2.2	44	90	5	149	36	29	4	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68529303--68529431	16	8.1	16	94	0	231	24	34	3	37	1.74
68529296--68529429	32	4.2	32	99	0	259	25	33	3	37	1.74
68533923--68534373	50	8.8	50	82	5	530	26	22	30	21	1.98
68533931--68534365	101	4.3	101	94	2	694	26	22	30	20	1.98
68535705--68535734	12	2.5	12	94	0	51	6	23	40	30	1.80
68536595--68536654	21	2.9	21	89	0	93	50	18	20	11	1.77
68539525--68539554	2	15.0	2	100	0	60	50	0	0	50	1.00
68540729--68540763	14	2.5	14	90	0	52	28	22	20	28	1.98
68540943--68540970	8	3.5	8	100	0	56	53	21	10	14	1.70
68544712--68544776	13	5.5	13	72	20	70	47	15	0	36	1.46
68544712--68544785	23	3.2	23	94	0	121	48	14	0	36	1.45
68545576--68545637	30	2.1	30	84	6	81	35	17	12	33	1.88
68546079--68546105	10	2.7	10	100	0	54	74	14	0	11	1.08
68546746--68546781	18	1.9	18	88	5	54	44	0	0	55	0.99
68547859--68547894	2	18.0	2	100	0	72	0	50	0	50	1.00
68561040--68561083	22	2.0	22	90	0	70	56	6	2	34	1.38
68563476--68563563	43	2.0	43	95	0	158	37	17	7	37	1.79
68565402--68565648	76	3.3	76	82	5	234	40	14	10	34	1.80
68566181--68566205	2	12.5	2	100	0	50	48	0	0	52	1.00
68570240--68570356	48	2.3	48	82	7	135	25	8	15	50	1.72
68570658--68570728	31	2.3	31	85	2	90	35	8	9	46	1.67
68572678--68572742	31	2.1	31	91	0	103	32	6	12	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68573340--68573537	43	4.6	42	87	2	279	25	28	19	26	1.99
68573340--68573537	85	2.3	86	89	0	299	25	28	19	26	1.99
68574022--68574078	29	2.0	29	96	0	105	31	26	28	14	1.94
68574128--68574222	43	2.2	43	84	3	120	30	29	17	22	1.97
68574581--68574693	21	5.4	21	86	0	118	5	42	16	35	1.71
68574670--68574829	66	2.4	66	85	4	207	13	28	18	40	1.88
68580237--68580459	16	13.9	16	65	20	99	37	1	16	44	1.58
68580251--68580394	25	5.7	25	71	12	96	37	2	15	45	1.58
68580312--68580969	9	74.7	9	69	19	188	39	1	13	45	1.51
68580312--68580495	34	5.5	33	70	15	119	38	2	16	42	1.61
68580312--68580553	25	9.6	24	67	18	86	38	2	16	42	1.60
68580313--68580553	100	2.4	100	95	2	428	39	2	17	41	1.61
68580516--68580548	16	2.1	16	100	0	66	30	0	24	45	1.53
68580533--68580821	34	8.4	34	72	14	186	40	0	12	47	1.46
68580432--68580649	84	2.5	86	80	7	228	39	1	13	45	1.53
68580608--68580649	22	1.9	22	95	0	75	40	0	11	47	1.40
68580662--68580694	16	2.1	16	100	0	66	30	0	24	45	1.53
68580631--68580855	47	4.7	47	68	23	155	39	0	13	46	1.47
68580514--68580941	146	2.9	146	100	0	856	39	0	12	47	1.46
68580754--68580795	22	1.9	22	95	0	75	40	0	11	47	1.40
68580808--68580840	16	2.1	16	100	0	66	30	0	24	45	1.53
68580826--68580923	34	2.9	34	93	0	169	40	1	9	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68580900--68580945	22	2.1	22	95	0	83	41	0	10	47	1.38
68580873--68580990	56	2.2	52	89	7	159	39	0	9	50	1.41
68582517--68582553	11	3.4	11	96	0	65	54	5	2	37	1.38
68583862--68583898	10	3.7	10	92	0	65	43	13	0	43	1.44
68584554--68584590	10	3.7	10	92	0	65	43	13	0	43	1.44
68585337--68585369	17	1.9	17	93	0	57	33	30	24	12	1.91
68585353--68585465	42	2.7	42	94	0	199	32	23	23	21	1.98
68585785--68585835	21	2.5	20	78	9	57	1	43	19	35	1.63
68591342--68591446	25	4.2	25	76	11	106	32	2	19	45	1.65
68591353--68591603	9	28.8	9	69	13	150	31	3	20	45	1.67
68591748--68591883	53	2.6	53	83	4	193	45	5	11	38	1.62
68591851--68591902	13	4.0	13	92	0	77	42	1	9	46	1.47
68591983--68592138	52	3.1	52	72	23	179	48	3	8	39	1.49
68591954--68592175	98	2.2	97	95	2	336	50	3	6	39	1.46
68592024--68592178	46	3.2	46	73	22	165	49	2	7	40	1.44
68591997--68592165	53	3.3	53	73	22	189	49	2	7	39	1.47
68592581--68592645	7	9.3	7	80	6	78	75	10	10	3	1.15
68592581--68592645	21	3.1	21	88	4	96	75	10	10	3	1.15
68592594--68592660	14	4.8	14	85	5	82	77	8	8	4	1.11
68592581--68592661	28	2.9	27	81	5	90	75	9	9	4	1.18
68592649--68592692	18	2.4	19	84	3	54	56	13	15	13	1.67
68593446--68593470	10	2.5	10	100	0	50	32	8	12	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68593969--68594381	199	2.1	198	87	1	603	34	19	16	29	1.94
68594769--68594860	47	2.0	47	84	0	121	46	3	7	42	1.48
68594848--68594896	19	2.6	19	81	12	66	14	4	2	79	0.97
68594856--68594896	18	2.3	18	91	4	66	12	4	0	82	0.81
68594933--68594959	14	1.9	14	100	0	54	44	7	0	48	1.31
68595030--68595217	95	2.0	96	83	7	240	42	28	1	28	1.63
68595186--68595280	7	13.6	7	78	4	84	29	46	2	22	1.63
68595186--68595276	14	6.5	14	77	8	96	28	47	2	21	1.63
68595187--68595280	21	4.5	21	77	5	100	29	45	2	22	1.64
68595379--68595417	12	3.1	12	89	10	60	33	51	0	15	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313