genome.fa.s26.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  95  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31655504--31655546	22	2.0	22	90	0	68	58	6	11	23	1.57
31659312--31659556	33	7.5	33	79	7	131	28	22	13	35	1.91
31659413--31659556	33	4.4	32	86	6	164	29	20	11	37	1.89
31659345--31659556	65	3.2	61	74	14	174	30	21	12	35	1.90
31660240--31660287	21	2.2	22	78	14	55	35	16	0	47	1.47
31666965--31667075	33	3.3	33	79	2	123	26	24	14	35	1.94
31667082--31667197	33	3.5	33	86	5	155	31	21	10	37	1.87
31667886--31667933	21	2.2	22	82	14	64	35	16	0	47	1.47
31671712--31671750	18	2.2	17	86	4	51	15	0	7	76	0.99
31671712--31671749	12	3.2	12	92	0	58	13	0	7	78	0.94
31674521--31674775	55	4.8	54	83	7	283	21	25	18	35	1.95
31674568--31674768	108	1.8	110	91	4	336	22	25	18	33	1.97
31681463--31681615	58	2.7	58	83	1	191	45	24	11	18	1.82
31681461--31681638	58	3.1	57	78	5	171	46	26	10	16	1.80
31682444--31682521	40	2.0	40	92	0	129	35	33	12	17	1.88
31692859--31693054	80	2.4	81	80	8	238	30	16	23	29	1.96
31692862--31693059	40	4.9	41	80	7	210	30	16	23	29	1.96
31693000--31693101	41	2.5	41	82	7	109	26	16	27	29	1.97
31693611--31693663	25	2.1	25	82	10	63	20	5	22	50	1.69
31696198--31696402	39	5.3	39	97	0	374	20	20	30	27	1.98
31696198--31696440	117	2.1	117	89	3	366	20	21	30	27	1.98
31696198--31696467	78	3.5	78	89	3	305	20	21	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31696198--31696472	117	2.4	117	86	4	342	20	21	29	28	1.98
31696217--31696472	39	6.6	38	88	4	200	20	21	29	27	1.98
31700578--31700624	23	2.0	24	83	4	60	27	6	14	51	1.67
31706333--31706463	40	3.2	40	85	9	169	25	17	25	30	1.97
31706333--31706521	40	4.6	42	79	9	137	25	16	25	31	1.96
31717524--31717555	16	2.0	16	100	0	64	31	6	6	56	1.49
31719177--31719210	6	5.7	6	85	0	50	0	14	38	47	1.45
31733100--31733156	18	3.2	17	71	14	53	24	26	0	49	1.51
31739360--31739552	105	1.9	101	82	6	244	33	16	24	25	1.96
31740666--31740725	22	2.7	23	85	10	81	31	21	26	20	1.98
31740658--31740735	22	3.5	22	80	0	75	33	24	24	17	1.97
31740969--31741034	27	2.4	27	77	7	71	25	19	19	34	1.96
31747055--31747088	18	1.9	18	88	5	52	41	11	17	29	1.85
31747865--31747929	22	3.0	22	81	0	76	38	26	24	10	1.88
31759866--31759958	17	5.3	17	72	25	68	29	48	1	21	1.57
31759918--31759943	13	2.0	13	100	0	52	38	46	0	15	1.46
31763734--31763918	92	2.0	93	93	1	318	56	14	11	17	1.68
31766459--31766525	14	4.7	14	85	3	89	41	4	13	40	1.64
31766465--31766525	29	2.1	29	90	0	95	39	4	13	42	1.65
31766983--31767031	22	2.2	22	92	0	80	46	20	6	26	1.73
31767585--31767613	15	1.9	15	100	0	58	41	17	13	27	1.87
31771877--31771913	11	3.5	11	78	14	51	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31771877--31771915	20	2.0	20	100	0	78	74	5	0	20	1.01
31777494--31777526	17	1.9	17	100	0	66	18	6	21	54	1.64
31780497--31780556	25	2.3	24	81	13	66	51	11	8	28	1.67
31786226--31786290	33	2.0	33	87	6	96	10	24	24	40	1.87
31787421--31787488	1	68.0	1	97	0	127	98	0	1	0	0.11
31787491--31787578	43	2.0	43	95	0	158	36	17	12	34	1.87
31789265--31789953	348	2.0	348	92	0	1144	30	18	20	31	1.96
31801772--31801886	57	2.0	57	98	0	221	33	14	20	30	1.93
31809039--31809132	40	2.5	37	82	8	109	31	29	22	15	1.95
31810223--31810253	3	10.0	3	93	6	53	64	0	3	32	1.09
31810329--31810454	60	2.1	59	86	5	173	25	17	7	50	1.71
31810348--31810466	60	2.0	60	91	0	193	26	14	6	52	1.66
31811720--31811970	39	6.4	39	87	1	360	19	22	28	29	1.98
31816222--31816261	21	1.9	21	84	0	53	37	22	2	37	1.68
31817610--31817658	25	2.0	25	100	0	98	48	8	16	26	1.73
31821349--31821405	30	1.9	30	85	0	78	28	35	22	14	1.93
31824014--31824078	27	2.4	27	81	0	76	13	23	26	36	1.92
31828312--31828353	20	2.1	20	95	0	75	40	11	14	33	1.82
31833134--31833410	48	5.8	48	80	8	262	29	17	27	25	1.98
31833134--31833410	96	2.9	96	89	1	385	29	17	27	25	1.98
31833689--31833756	33	2.1	33	94	0	118	23	20	8	47	1.78
31840063--31840133	30	2.4	30	85	0	97	21	33	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31843201--31843233	13	2.6	13	90	4	50	48	12	0	39	1.40
31845778--31845865	6	16.8	5	73	21	58	77	0	4	18	0.94
31845778--31845870	12	8.0	11	75	17	73	77	0	4	18	0.93
31845778--31845870	24	3.8	25	78	7	91	77	0	4	18	0.93
31845778--31845870	44	2.1	44	84	9	120	77	0	4	18	0.93
31845804--31845853	9	5.2	10	77	18	61	82	0	2	16	0.77
31845779--31845870	38	2.3	40	80	12	109	77	0	4	18	0.94
31851191--31851223	13	2.6	13	90	4	50	48	12	0	39	1.40
31854184--31854297	43	2.7	43	79	5	115	33	21	16	28	1.95
31859324--31859357	13	2.6	13	95	0	59	35	32	0	32	1.58
31860274--31860318	23	2.1	21	88	12	65	26	2	15	55	1.52
31865065--31865144	41	2.0	41	97	0	151	27	16	46	10	1.78
31868327--31868399	20	3.8	20	71	18	73	30	0	24	45	1.54
31868706--31869210	126	4.0	126	90	2	750	34	19	20	26	1.96
31872697--31872739	18	2.4	18	92	0	68	41	9	27	20	1.83
31873099--31873151	25	2.1	25	92	0	88	37	26	20	15	1.92
31874371--31874477	48	2.2	48	82	11	130	47	3	9	39	1.54
31874615--31874678	11	5.9	11	75	3	67	39	1	17	42	1.59
31874614--31874667	21	2.5	21	82	11	65	42	1	16	38	1.59
31875589--31875629	21	2.0	21	90	0	64	29	9	21	39	1.86
31876379--31876422	20	2.3	19	84	4	52	63	4	20	11	1.44
31877390--31877732	171	2.0	171	97	0	650	48	9	12	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31877795--31877852	23	2.5	23	83	8	73	48	0	3	48	1.18
31882470--31882560	25	3.6	25	95	0	155	29	30	13	26	1.94
31895813--31895869	30	1.9	30	85	0	78	15	29	31	22	1.95
31897350--31897472	45	2.7	45	82	0	129	30	20	14	34	1.92
31900244--31900278	18	1.9	18	100	0	70	40	11	20	28	1.87
31904753--31904799	15	3.0	15	76	17	51	61	2	0	36	1.08
31904753--31904796	14	2.9	15	83	12	54	63	2	0	34	1.07
31904793--31904839	7	6.9	7	85	4	51	40	0	6	53	1.27
31904796--31904835	14	2.9	14	88	0	62	37	0	7	55	1.29
31910397--31910436	17	2.4	17	82	0	53	42	2	0	55	1.13
31911077--31911119	12	3.8	12	78	12	54	76	2	11	9	1.10
31912606--31912701	15	6.4	15	80	4	97	32	20	22	23	1.98
31912606--31912701	30	3.2	30	80	0	120	32	20	22	23	1.98
31912770--31912818	15	3.3	15	85	0	62	28	20	24	26	1.99
31912598--31912818	30	7.6	29	66	8	92	30	19	21	28	1.97
31912835--31912949	34	3.4	34	96	1	205	32	19	16	32	1.94
31913027--31913077	15	3.5	15	70	5	50	21	17	35	25	1.95
31917411--31917461	23	2.2	24	82	6	61	11	9	1	76	1.10
31917824--31917935	56	2.0	56	100	0	224	35	10	16	37	1.83
31919063--31919106	16	2.7	17	82	10	56	54	0	2	43	1.12
31926730--31926877	73	2.0	73	98	0	287	22	19	22	34	1.97
31940199--31940234	13	2.8	13	91	0	63	8	19	36	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31963607--31963640	17	1.9	17	88	5	50	38	35	23	2	1.70
31964816--31964867	27	1.9	27	84	7	70	44	3	7	44	1.51
31965021--31965081	31	2.0	31	83	3	79	36	3	9	50	1.52
31970562--31970610	10	4.9	10	80	9	64	67	2	8	22	1.28
31971241--31971297	8	6.8	8	88	7	78	1	14	0	84	0.71
31971242--31971296	18	2.8	20	84	13	71	1	12	0	85	0.68
31971241--31971294	27	2.0	27	92	7	92	1	14	0	83	0.73
31971267--31971305	16	2.4	16	86	4	51	10	12	0	76	1.01
31973964--31974023	7	8.6	7	83	12	61	66	0	1	31	1.01
31973964--31974023	15	4.3	14	77	14	61	66	0	1	31	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313