genome.fa.s26.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  190  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58333579--58333680	51	2.0	51	92	0	168	22	29	20	27	1.99
58338908--58338974	16	4.2	16	88	0	89	41	2	26	28	1.70
58346155--58346197	18	2.3	19	84	4	52	65	9	9	16	1.47
58346550--58346646	48	2.0	48	91	0	158	50	1	8	40	1.39
58348320--58348365	22	2.1	22	84	8	58	21	0	15	63	1.31
58349308--58349350	21	2.0	21	82	8	52	53	9	4	32	1.53
58358802--58358886	28	3.0	27	70	8	71	56	1	0	42	1.07
58358802--58358885	29	3.0	28	71	13	66	55	1	0	42	1.07
58362150--58362211	21	3.1	21	68	13	67	37	17	32	12	1.88
58362162--58362228	18	3.6	18	71	15	55	38	14	29	16	1.89
58362150--58362228	39	2.0	39	90	4	124	37	16	30	15	1.89
58368148--58368186	19	2.0	20	90	5	62	17	5	7	69	1.32
58368258--58368324	17	4.0	17	78	3	73	29	1	1	67	1.09
58369100--58369133	17	1.9	17	88	5	50	47	0	0	52	1.00
58378839--58378994	43	3.7	43	69	13	126	29	29	17	23	1.97
58381122--58381178	22	2.6	23	83	8	73	47	19	21	12	1.81
58382147--58382339	5	38.8	5	98	1	379	59	0	0	40	0.97
58383041--58383085	18	2.5	18	96	0	81	37	22	15	24	1.93
58389761--58389868	37	2.9	37	75	18	102	40	2	3	52	1.33
58389907--58389947	17	2.4	17	83	0	55	46	2	2	48	1.28
58394063--58394100	14	2.8	13	88	7	58	52	2	7	36	1.45
58394337--58394443	35	3.1	35	84	2	144	20	22	14	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58394338--58394445	34	3.1	34	86	1	144	20	23	13	42	1.88
58396344--58396451	34	3.1	34	85	2	144	42	13	23	20	1.88
58396346--58396452	35	3.1	34	86	1	133	42	14	22	20	1.87
58396689--58396725	14	2.7	14	91	4	58	35	8	2	54	1.44
58400953--58400995	21	2.0	23	81	9	54	44	11	11	32	1.77
58401016--58401071	20	2.7	21	81	13	53	69	7	12	10	1.36
58401027--58401071	21	2.1	23	88	12	69	68	8	8	13	1.38
58402974--58403006	12	2.8	12	90	4	50	51	0	3	45	1.16
58404246--58404301	24	2.3	25	90	6	89	44	28	10	16	1.80
58404252--58404313	18	3.0	20	81	13	56	46	30	8	14	1.73
58404288--58404316	15	1.9	15	100	0	58	55	34	6	3	1.44
58409128--58409156	4	7.2	4	100	0	58	0	24	27	48	1.51
58413297--58413352	22	2.5	23	79	5	69	32	8	23	35	1.86
58413618--58413683	28	2.4	28	86	0	96	27	19	22	30	1.98
58417966--58417993	6	4.7	6	100	0	56	85	0	0	14	0.59
58418152--58418199	16	2.9	16	78	3	51	60	2	2	35	1.20
58423225--58423267	21	2.0	21	82	13	52	34	18	0	46	1.50
58430171--58430303	66	2.0	66	91	0	212	39	18	9	32	1.83
58433698--58433745	23	2.1	23	96	3	89	39	4	0	56	1.19
58439620--58439681	6	9.7	6	81	13	63	72	0	12	14	1.12
58439619--58439691	7	11.0	7	79	20	86	71	0	13	15	1.15
58440857--58441040	100	1.8	100	83	0	242	33	20	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58441207--58441538	44	7.6	45	71	12	163	25	20	26	28	1.99
58441026--58441593	218	2.6	217	91	2	915	27	18	24	29	1.98
58441593--58441912	87	3.7	87	93	0	496	28	22	23	25	1.99
58442035--58442149	44	2.7	43	74	15	112	33	20	21	23	1.97
58442158--58442263	44	2.4	44	90	0	158	31	20	22	25	1.98
58448430--58448462	8	4.2	8	88	3	50	39	3	12	45	1.57
58451189--58451319	30	4.6	29	70	20	87	26	15	24	33	1.95
58451161--58451380	26	7.8	29	69	14	113	26	14	24	35	1.94
58458766--58458859	45	2.1	45	89	0	143	43	10	5	40	1.62
58460209--58460239	13	2.4	13	94	0	53	61	0	0	38	0.96
58461232--58461295	31	2.1	31	96	0	119	25	23	18	32	1.97
58462322--58462369	18	2.6	19	80	9	55	43	29	8	18	1.79
58466017--58466054	18	2.0	19	85	10	51	65	0	0	34	0.93
58469092--58469128	19	1.9	19	89	10	58	59	2	0	37	1.12
58469097--58469140	18	2.4	18	82	10	54	54	2	0	43	1.12
58469841--58469895	18	3.1	18	76	7	58	70	3	1	23	1.12
58469841--58469920	17	4.7	17	70	14	58	70	3	1	25	1.12
58469865--58469932	34	2.1	34	83	10	88	63	8	1	26	1.32
58470303--58470349	24	1.9	25	86	4	69	44	0	4	51	1.21
58470571--58470602	15	2.2	15	94	5	57	25	0	0	75	0.81
58470540--58471271	241	3.0	240	95	1	1279	29	14	12	43	1.82
58478276--58478350	37	2.0	37	89	5	116	16	20	32	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58478712--58478785	21	3.5	20	73	14	60	36	24	22	16	1.94
58478752--58478797	23	2.0	23	91	0	74	39	21	21	17	1.93
58478712--58478798	44	2.0	41	80	6	93	36	22	21	18	1.95
58479104--58479135	16	1.9	17	93	6	57	25	21	0	53	1.46
58479788--58479822	14	2.5	14	90	9	54	0	14	5	80	0.89
58479975--58480012	14	2.4	17	87	12	55	52	0	0	47	1.00
58479992--58480030	12	3.4	11	80	13	51	46	2	0	51	1.14
58495008--58495033	8	3.2	8	100	0	52	23	26	11	38	1.89
58499279--58499323	23	2.0	23	95	0	81	22	40	15	22	1.91
58500557--58500584	14	2.0	14	100	0	56	21	7	21	50	1.72
58501113--58501139	13	2.1	13	100	0	54	22	0	33	44	1.53
58503260--58503311	3	17.0	3	84	4	59	32	5	1	59	1.32
58503248--58503311	18	3.6	18	87	4	85	31	4	4	59	1.38
58503261--58503311	15	3.3	15	83	2	66	33	5	1	58	1.33
58513107--58513143	9	4.1	9	92	0	65	45	13	10	29	1.77
58513356--58513415	30	2.0	31	86	3	86	20	40	0	40	1.52
58522764--58522810	23	2.0	23	95	0	85	38	2	17	42	1.61
58524564--58524600	17	2.2	17	95	0	65	32	18	18	29	1.96
58528788--58529167	169	2.2	170	80	5	412	41	23	13	22	1.89
58528747--58529143	212	1.9	212	81	6	491	41	23	13	22	1.89
58528747--58529164	43	9.8	43	78	6	336	40	23	13	22	1.89
58529102--58529242	72	2.0	72	80	2	158	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58533110--58533237	35	3.6	35	89	1	175	42	34	9	13	1.76
58534527--58534708	35	5.2	35	80	5	188	33	3	30	32	1.74
58534526--58534741	70	3.1	70	82	1	236	33	3	30	32	1.74
58534616--58534747	35	3.8	35	82	1	131	32	5	30	31	1.80
58543385--58544034	357	1.8	356	84	6	857	41	12	20	25	1.88
58545625--58545800	60	2.9	60	78	9	164	47	17	14	21	1.83
58546514--58546562	26	1.9	25	88	12	73	53	8	18	20	1.70
58551121--58551566	88	5.1	87	78	4	421	27	24	25	23	2.00
58551182--58551325	44	3.3	42	66	12	110	25	27	25	22	2.00
58551121--58551608	175	2.8	172	80	4	528	27	23	25	23	2.00
58551619--58551716	44	2.2	44	94	0	169	24	19	26	29	1.98
58551702--58551809	44	2.5	43	83	6	128	33	20	15	30	1.94
58551835--58551934	44	2.3	43	81	6	112	34	22	19	25	1.96
58553346--58553380	15	2.4	15	95	4	63	34	2	5	57	1.37
58557781--58557811	2	15.5	2	93	0	53	0	45	0	54	0.99
58561838--58561864	6	4.5	6	100	0	54	18	29	37	14	1.91
58563752--58563776	13	1.9	13	100	0	50	32	4	0	64	1.12
58574223--58574281	2	29.5	2	89	0	91	0	44	0	55	0.99
58584646--58584828	30	6.2	30	86	5	241	31	8	16	43	1.79
58584655--58584828	60	3.0	60	89	6	268	31	9	17	41	1.81
58584657--58584849	30	6.4	30	83	8	214	31	7	18	43	1.77
58584970--58585049	41	2.0	40	85	2	106	25	20	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58586704--58586883	90	2.0	90	98	0	351	39	12	11	36	1.79
58587401--58587473	32	2.3	32	79	6	78	56	8	4	31	1.48
58589384--58589443	19	3.2	18	79	9	66	33	3	1	61	1.22
58594051--58594192	71	2.0	70	97	1	266	32	10	25	30	1.90
58598999--58599046	21	2.3	21	92	3	80	29	8	2	60	1.37
58600292--58600340	14	3.2	14	76	18	53	51	8	8	32	1.61
58602442--58602466	8	3.1	8	100	0	50	28	0	12	60	1.32
58604900--58604944	22	2.1	21	87	4	63	11	15	28	44	1.81
58606244--58606304	28	2.2	28	85	5	79	32	24	9	32	1.88
58609603--58609642	18	2.2	18	90	0	62	15	2	2	80	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313