genome.fa.s26.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  138  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44473196--44473458	87	3.0	87	92	0	427	23	23	23	29	1.99
44474691--44474724	12	2.7	13	86	9	52	17	8	0	73	1.08
44475043--44475110	30	2.4	28	87	5	91	8	10	7	73	1.25
44475093--44475117	7	3.6	7	100	0	50	0	12	0	88	0.53
44476268--44476304	9	4.1	9	92	0	65	29	10	13	45	1.77
44476359--44476389	9	3.4	9	90	0	53	38	22	12	25	1.90
44476586--44476848	87	3.0	87	92	0	427	23	23	23	29	1.99
44478081--44478114	12	2.7	13	86	9	52	17	8	0	73	1.08
44478433--44478500	30	2.4	28	87	5	91	8	10	7	73	1.25
44478483--44478507	7	3.6	7	100	0	50	0	12	0	88	0.53
44480979--44481022	20	2.1	21	83	4	54	11	22	11	54	1.68
44495418--44495515	3	30.7	3	77	15	74	59	3	6	31	1.37
44504720--44504782	31	2.1	31	93	3	110	44	9	12	33	1.75
44507781--44507817	17	2.2	17	100	0	74	43	16	5	35	1.71
44512961--44513017	18	3.2	18	94	0	96	29	17	26	26	1.97
44514501--44514544	21	2.1	20	87	8	61	65	0	15	18	1.27
44515617--44515643	2	13.5	2	100	0	54	51	0	0	48	1.00
44521229--44521257	5	5.8	5	100	0	58	79	0	0	20	0.74
44523588--44523731	21	6.9	21	75	5	112	20	18	17	44	1.87
44523625--44523753	42	3.1	42	80	2	125	19	18	17	44	1.87
44523680--44523745	21	3.1	21	80	0	78	16	22	16	43	1.87
44523686--44523753	21	3.2	21	76	0	73	16	23	17	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44531190--44531537	174	2.0	174	100	0	696	33	8	16	42	1.77
44532215--44532278	29	2.2	29	81	10	78	18	15	6	59	1.57
44532290--44532367	3	26.3	3	81	2	95	32	2	3	61	1.27
44536286--44536320	18	2.0	18	88	5	54	57	20	5	17	1.60
44542185--44542209	12	2.1	12	100	0	50	16	52	8	24	1.70
44542181--44542251	27	2.6	27	80	4	81	18	46	5	29	1.72
44553327--44553358	5	6.2	5	92	7	55	40	0	18	40	1.51
44553835--44553902	26	2.6	25	82	11	75	22	26	17	33	1.96
44553859--44553915	26	2.2	26	87	0	78	21	24	19	35	1.96
44557557--44557658	31	3.4	31	72	6	84	34	20	2	42	1.67
44560490--44560941	226	2.0	226	92	3	759	25	13	18	42	1.86
44560879--44560907	4	7.2	4	100	0	58	24	0	24	51	1.48
44561109--44561156	22	2.2	22	100	0	96	16	31	14	37	1.89
44573033--44573072	16	2.5	17	80	15	50	30	5	2	62	1.29
44586038--44586072	18	1.9	18	88	0	52	80	0	2	17	0.84
44586066--44586113	20	2.3	21	86	10	64	64	2	4	29	1.23
44586391--44586437	10	4.8	10	78	2	51	34	2	2	61	1.20
44586408--44586496	19	4.5	20	76	17	80	43	2	0	53	1.13
44586391--44586496	19	5.4	19	76	10	79	40	1	0	56	1.16
44586410--44586492	38	2.1	40	84	8	109	43	2	0	54	1.13
44591554--44591599	21	2.2	21	96	0	83	32	23	19	23	1.97
44593346--44593398	19	2.8	18	78	18	54	32	20	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44595346--44595591	101	2.4	101	91	0	393	32	15	23	27	1.95
44595419--44595565	33	4.4	32	67	12	98	34	16	22	27	1.95
44598346--44598430	24	3.6	23	72	12	82	15	25	23	35	1.94
44598284--44598430	72	2.0	72	81	2	170	17	27	22	33	1.96
44598874--44598907	12	2.8	12	100	0	68	35	5	17	41	1.74
44599282--44599615	167	2.0	167	100	0	668	40	7	19	32	1.80
44603040--44603079	20	2.0	20	95	0	71	32	30	27	10	1.89
44604076--44604142	34	1.9	35	87	3	100	44	14	8	31	1.76
44610374--44610534	44	3.6	44	79	8	182	32	19	19	27	1.96
44610373--44610722	89	3.9	89	76	7	280	34	16	18	30	1.94
44610413--44610722	44	7.0	44	75	11	182	33	16	19	30	1.94
44612454--44612497	22	2.0	22	82	8	54	22	6	2	68	1.25
44624382--44624420	20	2.0	20	89	0	60	33	25	12	28	1.93
44627098--44627132	17	2.1	17	88	0	52	48	0	0	51	1.00
44632308--44632392	40	2.1	41	82	10	104	35	24	20	20	1.96
44633159--44633446	97	3.0	97	90	2	440	39	17	2	40	1.62
44633544--44633663	40	2.9	39	78	7	123	22	22	26	28	1.99
44633957--44633993	18	2.1	18	89	0	56	54	2	2	40	1.29
44634440--44634503	29	2.2	29	85	0	92	23	14	15	46	1.82
44635452--44635477	5	5.2	5	100	0	52	19	0	42	38	1.51
44642039--44642068	15	2.0	15	93	0	51	76	6	3	13	1.11
44642665--44642691	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44644958--44644992	17	2.0	18	88	5	54	51	0	8	40	1.33
44645109--44645164	17	3.3	17	76	18	62	53	0	1	44	1.11
44645111--44645182	15	4.5	15	72	23	58	52	0	1	45	1.09
44646943--44646977	17	2.0	18	88	5	54	51	0	8	40	1.33
44648638--44648757	44	2.7	44	76	10	129	23	25	21	29	1.99
44648536--44649314	217	3.6	215	88	3	1122	27	24	18	29	1.98
44648997--44649358	44	8.3	44	68	11	165	28	23	18	29	1.98
44649304--44650174	128	6.8	128	91	0	1323	25	22	19	33	1.97
44651414--44651446	16	2.0	17	94	5	59	18	15	0	66	1.25
44654133--44654160	14	2.0	14	100	0	56	35	42	7	14	1.73
44660663--44660699	9	4.1	9	86	13	58	45	10	10	32	1.74
44660914--44660973	30	2.0	31	86	3	86	20	40	0	40	1.52
44672466--44672518	19	2.7	19	75	13	54	69	3	0	26	1.05
44680642--44680803	40	4.1	40	86	4	222	18	17	24	39	1.92
44682846--44682887	18	2.3	19	88	12	61	42	16	21	19	1.89
44682865--44683016	45	3.4	44	85	1	187	42	19	17	21	1.90
44683218--44683305	39	2.2	39	85	2	113	38	19	5	36	1.75
44690901--44690944	18	2.4	18	92	0	70	40	40	2	15	1.60
44691055--44691105	9	5.7	9	90	0	75	23	13	25	37	1.92
44691047--44691105	27	2.2	27	90	0	91	25	13	23	37	1.92
44706361--44706386	13	2.0	13	100	0	52	30	15	15	38	1.88
44707369--44707984	45	13.9	45	78	3	426	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44707369--44707993	135	4.7	134	78	5	491	31	17	23	27	1.97
44707369--44707986	90	7.0	89	79	6	479	31	17	23	27	1.97
44707610--44707993	128	2.9	131	74	11	354	30	17	23	27	1.97
44710420--44710457	19	2.0	20	89	5	60	10	21	7	60	1.54
44711378--44711444	22	3.1	22	78	2	73	62	11	8	16	1.53
44720298--44720366	16	4.2	16	92	3	120	24	1	37	36	1.65
44720298--44720366	33	2.1	32	94	2	120	24	1	37	36	1.65
44720347--44720437	45	2.0	45	85	2	121	27	6	28	37	1.82
44720602--44720635	17	2.0	17	88	11	52	55	0	0	44	0.99
44720721--44720755	18	2.0	18	94	5	63	57	0	0	42	0.99
44720585--44721689	120	9.2	120	96	0	1953	48	5	1	43	1.38
44721081--44721115	18	2.0	17	88	5	52	54	0	0	45	0.99
44721201--44721235	18	2.0	18	94	5	63	57	0	0	42	0.99
44721321--44721355	18	2.0	18	94	5	63	57	0	0	42	0.99
44734203--44734256	29	1.9	28	88	7	83	29	16	16	37	1.91
44734479--44734748	125	2.2	125	89	4	429	28	15	22	32	1.95
44740795--44740973	90	2.0	89	95	0	313	28	24	22	24	1.99
44742439--44743481	28	38.4	24	67	24	233	32	0	24	43	1.59
44742439--44743487	200	5.5	195	74	15	322	32	0	24	42	1.59
44743159--44743224	26	2.7	24	86	11	89	33	1	24	40	1.64
44743329--44743544	63	3.6	63	83	12	264	32	0	22	44	1.57
44743502--44743568	23	2.9	23	86	4	91	31	1	22	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44744356--44744380	7	3.6	7	100	0	50	60	12	0	28	1.32
44745310--44745343	15	2.3	15	90	5	52	67	5	0	26	1.13
44745441--44745497	29	2.0	28	90	10	89	56	1	0	42	1.10
44745533--44745583	22	2.3	21	83	9	66	33	0	33	33	1.58
44755332--44755393	22	2.8	22	70	18	65	17	20	19	41	1.90
44755340--44755469	22	6.0	22	73	11	115	16	20	17	44	1.87
44755332--44755465	44	3.0	44	85	0	178	16	21	17	44	1.87
44762563--44762681	62	1.9	61	94	1	211	35	25	16	22	1.95
44766379--44766586	15	13.9	15	73	2	121	25	21	22	30	1.99
44766373--44766537	60	2.8	60	82	1	179	29	20	21	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313