genome.fa.s26.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  227  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69851427--69851472	21	2.2	21	84	0	56	67	8	10	13	1.42
69859519--69859547	12	2.3	13	94	5	51	20	6	6	65	1.40
69864195--69864953	379	2.0	379	94	0	1329	33	11	17	37	1.85
69865535--69865577	17	2.5	17	80	0	50	44	6	4	44	1.52
69867931--69868108	27	6.6	27	83	3	205	26	15	28	29	1.96
69867932--69868087	82	1.9	81	88	3	233	26	15	28	29	1.96
69867928--69868108	82	2.2	81	83	2	229	27	15	27	29	1.96
69875687--69875713	12	2.2	12	100	0	54	51	7	0	40	1.30
69876192--69876369	27	6.6	27	83	3	196	26	15	28	30	1.96
69876193--69876348	82	1.9	81	88	3	233	26	15	28	29	1.96
69894501--69894553	26	2.0	26	81	0	61	33	16	26	22	1.96
69894603--69894836	32	7.4	32	78	5	208	38	20	19	21	1.94
69894633--69894839	64	3.3	62	79	7	236	38	21	19	20	1.93
69895012--69895065	23	2.3	23	83	3	63	46	24	7	22	1.77
69895087--69895260	27	6.6	26	81	5	190	25	22	17	34	1.96
69895101--69895260	53	3.0	53	87	5	207	26	20	18	35	1.95
69895101--69895258	80	2.0	80	84	0	208	25	20	18	35	1.95
69895309--69895464	27	5.8	27	79	1	143	25	16	19	37	1.93
69895300--69895464	54	3.1	53	82	1	186	26	16	19	38	1.92
69904677--69904861	79	2.3	82	83	9	231	25	28	22	23	2.00
69904658--69904861	40	5.1	40	81	10	231	25	27	22	24	2.00
69908548--69908611	26	2.5	26	86	0	83	28	23	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69912988--69913058	15	4.7	15	82	3	79	39	8	16	35	1.79
69912988--69913055	30	2.2	31	86	2	93	38	8	17	35	1.81
69923154--69923221	34	2.0	34	94	0	118	27	4	32	35	1.77
69927909--69927994	45	1.9	45	92	0	145	26	15	24	33	1.95
69929389--69929413	13	1.9	13	100	0	50	20	8	8	64	1.46
69931884--69931916	5	6.6	5	92	0	57	0	21	0	78	0.75
69933516--69933565	25	2.0	25	100	0	100	24	48	0	28	1.52
69933987--69934066	41	2.0	41	94	0	142	42	22	12	22	1.87
69935563--69935600	18	2.1	18	90	0	58	47	39	2	10	1.52
69937426--69937506	30	2.7	30	98	0	153	18	17	12	51	1.75
69938250--69938327	40	2.0	41	85	10	108	33	2	3	60	1.28
69938294--69938332	19	2.0	19	90	5	60	35	0	5	58	1.20
69938266--69938327	10	6.6	9	75	12	54	30	1	3	64	1.19
69938256--69938333	20	4.0	20	71	14	56	35	2	3	57	1.30
69938344--69938393	19	2.5	20	81	12	59	38	0	6	56	1.24
69938530--69938585	24	2.3	24	100	0	112	30	17	19	32	1.95
69941531--69941656	27	4.7	26	81	6	135	27	17	26	27	1.98
69941530--69941656	54	2.3	54	82	11	152	28	17	26	27	1.98
69946358--69946533	46	3.8	46	79	12	198	21	21	28	28	1.98
69946355--69946525	93	1.8	93	93	0	297	22	21	28	28	1.99
69950811--69950918	20	5.4	20	75	13	75	35	18	8	37	1.81
69951072--69951176	23	4.6	22	73	10	68	36	19	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69951097--69951201	47	2.2	49	85	10	146	31	20	23	24	1.98
69951121--69951211	26	3.7	25	76	12	100	31	19	24	24	1.98
69957446--69957566	61	2.0	61	98	0	233	37	14	7	41	1.73
69957549--69957656	20	5.4	20	76	8	80	36	16	8	38	1.79
69957808--69957914	23	4.7	22	75	14	92	37	19	17	25	1.94
69957808--69957889	23	3.6	22	82	8	94	35	20	18	25	1.95
69957808--69957939	45	2.8	44	81	12	115	35	18	18	26	1.95
69961768--69961867	50	2.0	50	100	0	200	24	22	12	42	1.87
69965427--69965525	50	2.0	50	97	0	189	15	27	17	40	1.89
69973982--69974051	16	4.4	16	92	0	95	32	0	34	32	1.58
69974030--69974139	45	2.6	43	80	9	129	33	5	29	31	1.80
69983608--69983644	9	4.1	9	92	0	65	48	10	8	32	1.67
69983700--69983766	30	2.2	31	79	12	77	20	50	0	28	1.48
69984196--69984595	200	2.0	200	100	0	800	47	9	8	36	1.65
69984725--69984775	5	10.2	5	100	0	102	21	19	19	39	1.93
69985440--69985470	5	6.2	5	100	0	62	38	0	0	61	0.96
69987128--69987165	13	2.9	13	88	0	58	28	7	26	36	1.84
69990839--69990887	24	2.0	24	100	0	98	57	14	8	20	1.63
69992370--69992503	45	2.9	45	80	8	164	40	14	20	25	1.90
70000602--70000847	125	2.0	125	96	0	456	20	19	21	37	1.94
70010144--70010173	15	1.9	16	93	6	53	56	0	0	43	0.99
70017685--70017717	17	1.9	17	93	0	57	51	6	0	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70035892--70036182	51	5.7	51	78	5	277	29	27	14	28	1.95
70035892--70036186	102	2.9	102	91	0	439	29	27	14	28	1.95
70035893--70036182	153	1.9	152	80	4	343	29	27	14	28	1.95
70038666--70038965	149	2.0	149	100	0	600	44	18	10	26	1.82
70039283--70039367	25	3.4	24	79	9	82	23	23	23	29	1.99
70049838--70049991	28	5.5	28	97	0	274	25	11	28	33	1.91
70049813--70049991	56	3.2	56	91	1	279	25	11	28	34	1.91
70055238--70055728	252	1.9	252	88	2	745	28	21	15	34	1.94
70062039--70062090	6	8.7	6	95	0	68	17	23	0	59	1.37
70062039--70062091	18	2.9	18	88	0	79	16	22	0	60	1.36
70077342--70077598	27	9.6	27	90	0	372	17	16	21	44	1.86
70083992--70084026	17	2.0	18	94	5	63	20	0	0	80	0.72
70104678--70104802	57	2.2	58	82	7	157	29	20	5	44	1.74
70107191--70107215	6	4.2	6	100	0	50	16	0	68	16	1.22
70112580--70112701	60	2.0	60	96	0	226	43	12	8	36	1.72
70112918--70113033	35	3.3	34	87	2	160	35	32	13	18	1.90
70114570--70114640	29	2.4	29	80	4	79	25	15	12	46	1.81
70118744--70118790	23	2.0	24	84	12	62	68	4	4	23	1.26
70127176--70127216	19	2.2	19	86	0	55	34	4	17	43	1.70
70135410--70135457	20	2.3	21	85	3	62	58	4	0	37	1.18
70135469--70135594	60	2.2	57	85	7	164	43	0	1	54	1.09
70135469--70135581	60	1.9	58	89	5	172	45	0	0	53	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70135518--70135558	15	2.7	15	88	3	55	56	0	0	43	0.99
70135489--70135563	25	3.0	25	78	5	64	45	0	0	54	0.99
70136368--70136443	23	3.3	23	88	0	116	22	21	26	30	1.99
70138443--70138488	23	1.9	24	86	8	67	67	4	4	23	1.27
70139959--70140007	25	2.0	25	100	0	98	40	8	10	40	1.69
70140141--70140188	15	3.2	15	96	0	87	27	0	0	72	0.84
70152817--70152887	33	2.2	33	89	0	115	40	33	12	12	1.81
70154224--70154481	119	2.2	120	85	6	337	25	26	22	25	2.00
70154205--70154488	40	7.1	40	86	5	353	24	27	22	25	2.00
70157177--70157220	23	1.9	23	90	9	72	45	20	0	34	1.51
70165717--70165936	104	2.1	104	87	5	313	29	22	12	35	1.91
70170095--70170189	48	2.0	48	89	6	147	45	7	26	21	1.77
70172222--70172300	23	3.5	23	77	6	81	25	3	6	64	1.34
70172317--70172350	17	2.0	17	94	0	59	35	8	0	55	1.31
70176246--70176397	35	4.3	35	85	2	171	40	31	11	15	1.84
70178698--70178989	27	10.9	27	83	4	324	32	17	24	26	1.96
70179027--70179106	27	3.0	27	85	3	108	35	15	27	22	1.94
70182918--70183091	50	3.5	50	88	0	222	27	23	28	20	1.99
70182929--70183161	50	4.7	50	83	3	204	29	22	26	21	1.99
70182918--70183112	100	2.0	100	82	0	237	27	22	28	21	1.99
70186377--70187682	435	3.0	435	96	0	2405	31	13	22	32	1.93
70198318--70198519	50	3.9	52	80	8	184	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70198375--70198568	50	3.9	50	80	2	203	27	23	28	20	1.99
70198868--70198911	14	2.9	15	83	6	54	15	20	2	61	1.45
70212748--70212785	20	1.9	20	94	0	67	26	13	21	39	1.89
70217346--70217495	39	3.8	39	80	6	142	36	22	20	22	1.96
70217465--70217791	113	2.9	114	84	1	415	25	21	23	29	1.99
70217691--70217828	73	1.9	72	86	4	197	28	21	19	30	1.98
70217691--70217852	73	2.2	73	81	4	184	25	19	22	32	1.97
70218260--70218433	7	25.1	7	66	15	51	17	4	39	39	1.68
70218283--70218335	21	2.6	21	84	3	72	13	3	43	39	1.62
70218298--70218354	27	2.1	27	100	0	114	10	3	47	38	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313