genome.fa.s26.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  132  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42622176--42622321	37	4.0	37	93	1	242	36	16	21	24	1.94
42624829--42624882	16	3.4	16	86	0	72	31	0	33	35	1.58
42625032--42625066	18	2.0	17	88	5	52	54	0	0	45	0.99
42625169--42625337	47	3.7	46	70	18	145	46	2	3	47	1.35
42625126--42625346	91	2.3	93	80	12	243	47	2	3	46	1.32
42635195--42635237	20	2.2	20	100	0	86	51	16	9	23	1.73
42639462--42639492	3	10.7	3	93	6	55	0	0	29	70	0.87
42639627--42639681	21	2.6	23	72	13	55	61	9	7	21	1.50
42643288--42643332	24	1.9	24	81	4	56	53	6	2	37	1.40
42648136--42648160	4	6.2	4	100	0	50	76	24	0	0	0.80
42648725--42648757	15	2.1	16	88	5	50	39	0	9	51	1.34
42648829--42648870	19	2.2	20	86	4	59	64	0	2	33	1.07
42649312--42649354	15	2.7	15	82	7	50	30	0	4	65	1.13
42655180--42655204	13	1.9	13	100	0	50	84	0	16	0	0.63
42662438--42662643	45	4.6	45	94	1	344	27	22	16	33	1.95
42667829--42667922	48	2.0	48	83	8	120	40	23	12	23	1.89
42670523--42670550	3	9.3	3	100	0	56	32	0	0	67	0.91
42676961--42677020	20	3.0	20	76	13	61	61	0	0	38	0.96
42679438--42679477	14	2.9	14	84	0	53	32	7	17	42	1.77
42679461--42679500	20	2.0	20	90	0	62	27	10	12	50	1.72
42679446--42679512	34	1.9	35	90	3	109	31	8	13	46	1.74
42679440--42679516	14	5.0	15	71	20	52	32	9	15	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42682305--42682365	25	2.4	26	74	20	65	60	1	32	4	1.28
42682427--42682460	18	1.9	17	94	5	59	41	0	58	0	0.98
42682482--42682571	41	2.2	41	100	0	180	32	18	17	31	1.95
42688527--42688559	15	2.1	16	88	5	50	51	9	15	24	1.72
42689042--42689114	29	2.4	30	80	15	71	63	4	1	31	1.22
42695622--42695662	18	2.2	18	87	12	57	65	7	2	24	1.30
42707065--42707103	17	2.4	17	87	8	55	20	5	20	53	1.64
42707060--42707103	17	2.7	15	82	10	52	20	4	20	54	1.62
42710421--42710503	40	2.1	40	100	0	166	36	9	9	44	1.70
42729403--42729446	22	2.0	22	100	0	88	27	18	36	18	1.94
42732760--42732844	24	3.4	24	77	7	71	58	7	8	25	1.52
42732788--42732838	26	2.0	26	88	0	75	62	5	3	27	1.36
42732863--42732911	21	2.3	21	78	3	53	61	4	6	28	1.38
42732896--42732969	26	2.8	26	82	11	89	63	2	5	28	1.30
42733089--42733158	28	2.4	29	72	15	72	64	1	7	27	1.28
42734387--42734454	6	11.3	6	72	17	52	1	1	44	52	1.19
42734379--42734436	29	2.0	30	89	3	91	3	0	48	48	1.18
42734887--42734999	25	4.5	25	81	8	113	35	22	23	18	1.96
42734904--42735010	50	2.1	50	81	3	126	36	20	25	17	1.94
42736674--42736734	28	2.2	28	90	0	95	44	1	21	32	1.62
42740140--42740180	20	2.0	21	85	4	57	48	2	0	48	1.14
42743510--42743535	9	2.9	9	100	0	52	34	0	57	7	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42762768--42762810	20	2.2	19	88	12	61	55	0	2	41	1.12
42762768--42762810	19	2.2	20	87	4	61	55	0	2	41	1.12
42763249--42763399	59	2.5	60	84	5	191	27	19	11	41	1.86
42764791--42764832	14	3.1	14	79	6	50	38	0	0	61	0.96
42764970--42765001	15	2.1	16	94	5	57	6	3	6	84	0.86
42764992--42765039	20	2.6	18	81	18	62	25	6	0	68	1.12
42765005--42765048	19	2.2	20	84	4	54	34	4	2	59	1.30
42764898--42765210	162	1.9	162	100	0	626	29	4	6	59	1.44
42765132--42765163	15	2.1	16	94	5	57	6	3	6	84	0.86
42765154--42765201	20	2.6	18	81	18	62	25	6	0	68	1.12
42765167--42765210	19	2.2	20	84	4	54	34	4	2	59	1.30
42772371--42772401	10	3.1	10	95	0	53	54	6	0	38	1.26
42797123--42797152	10	2.8	11	90	10	53	10	6	6	76	1.15
42803506--42804082	44	13.1	44	64	5	182	27	19	24	27	1.99
42803354--42804298	132	7.2	131	89	1	1275	28	19	24	27	1.98
42811568--42811607	20	2.0	20	100	0	80	25	10	0	65	1.24
42813515--42813747	41	5.7	42	88	2	314	22	27	21	28	1.99
42816251--42816292	21	2.0	21	82	13	52	52	0	7	40	1.29
42819133--42819169	9	4.3	9	83	10	51	13	0	29	56	1.37
42820903--42821021	37	3.2	37	70	4	105	42	4	10	42	1.59
42824544--42824671	60	2.1	61	88	2	188	36	11	13	38	1.81
42828057--42828139	27	3.1	26	89	5	105	31	18	32	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42828687--42828745	19	3.2	19	80	4	84	38	11	0	49	1.40
42828793--42828856	18	3.5	18	82	4	92	46	0	12	40	1.42
42828779--42828872	37	2.5	37	98	0	179	51	0	11	37	1.39
42828779--42828872	19	5.1	19	77	5	111	51	0	11	37	1.39
42829025--42829083	27	2.2	27	84	0	73	15	27	27	30	1.96
42829123--42829185	29	2.2	29	88	5	94	49	0	6	44	1.28
42830914--42830987	25	3.2	25	64	25	70	41	8	9	40	1.67
42830927--42830995	20	3.2	20	64	25	50	40	7	10	42	1.66
42830915--42831009	45	2.1	45	100	0	190	42	8	9	40	1.68
42837488--42837531	19	2.3	18	81	11	52	63	6	0	29	1.20
42837721--42837771	25	2.1	24	92	3	84	35	0	0	64	0.94
42837724--42837778	18	3.1	17	75	21	51	38	0	0	61	0.96
42837725--42837779	25	2.2	25	87	6	76	38	0	0	61	0.96
42837755--42837813	30	2.0	29	86	3	82	35	0	5	59	1.20
42845352--42845377	2	13.0	2	100	0	52	0	50	0	50	1.00
42855729--42855762	16	2.1	16	88	0	50	26	35	2	35	1.72
42860918--42860962	22	2.2	20	88	8	63	37	4	2	55	1.32
42869677--42869738	21	2.9	21	80	4	70	33	1	0	64	1.03
42893163--42893218	21	2.7	21	80	0	67	25	7	35	32	1.83
42895765--42895847	29	2.8	30	76	9	89	44	3	10	40	1.57
42897024--42897057	18	1.9	18	88	5	52	41	0	2	55	1.15
42902704--42902736	17	2.0	17	88	5	50	36	12	6	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42904652--42904723	19	3.8	18	83	9	81	62	4	0	33	1.14
42904708--42904735	14	2.0	14	100	0	56	64	7	0	28	1.20
42905378--42905448	29	2.6	26	77	18	72	43	1	1	53	1.18
42905396--42905445	13	3.2	16	70	18	52	48	0	0	52	1.00
42905388--42905445	29	2.0	30	83	10	75	44	1	1	51	1.21
42907953--42907982	15	1.9	16	93	6	53	63	3	33	0	1.11
42913236--42913311	35	2.2	35	90	2	118	57	17	6	18	1.60
42925674--42925698	8	3.1	8	100	0	50	52	24	0	24	1.48
42927590--42927670	17	4.8	17	78	14	80	41	1	4	51	1.31
42927579--42927675	50	1.9	50	87	4	142	43	3	4	49	1.37
42927579--42927711	49	2.7	49	79	12	137	38	3	3	54	1.37
42932234--42932259	6	4.3	6	100	0	52	69	0	0	30	0.89
42934323--42934379	29	2.0	29	85	0	78	56	8	1	33	1.41
42938870--42938904	17	2.1	17	89	10	54	71	0	0	28	0.86
42940367--42940558	93	2.1	93	86	5	264	31	10	22	34	1.89
42945410--42945440	16	1.9	16	93	0	53	19	6	0	74	1.03
42969236--42969287	24	2.2	24	89	0	77	55	9	1	32	1.43
42971206--42971257	24	2.2	24	89	0	77	55	9	1	32	1.43
42979404--42979446	21	2.0	21	86	8	61	51	13	0	34	1.42
42979935--42979985	20	2.5	22	78	18	65	41	0	3	54	1.19
42982015--42982245	46	5.0	46	91	1	347	29	26	8	35	1.86
42998311--42998336	11	2.4	11	100	0	52	53	0	7	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43002857--43002927	28	2.4	30	74	6	74	16	2	8	71	1.22
43008020--43008115	31	3.2	28	77	16	95	31	11	14	42	1.81
43009275--43009348	17	4.3	18	71	11	57	71	2	0	25	0.99
43009267--43009358	43	2.2	43	80	9	100	70	4	0	25	1.05
43011316--43011343	8	3.5	8	100	0	56	78	10	0	10	0.96
43020328--43020393	20	3.2	20	71	23	64	48	1	9	40	1.44
43020315--43020399	42	2.0	42	95	0	152	45	2	9	42	1.49
43025312--43025418	54	2.0	54	89	5	166	41	14	28	16	1.87
43032701--43032744	22	2.0	22	91	8	72	61	0	6	31	1.22
43044098--43044269	73	2.4	72	88	1	254	27	24	25	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313