Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  294  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90291204--90291260
29
2.0
29
100
0
114
52
7
12
28
1.64
90291601--90291625
3
8.3
3
100
0
50
68
0
0
32
0.90
90295351--90295379
12
2.3
13
94
5
51
20
6
6
65
1.40
90302474--90302563
43
2.1
43
95
0
162
11
24
36
27
1.89
90302483--90302576
43
2.2
43
88
0
134
12
24
37
25
1.91
90305273--90305491
43
5.1
43
93
1
334
13
24
33
28
1.93
90318086--90318125
20
2.0
20
85
0
53
52
2
12
32
1.52
90320467--90320513
4
11.8
4
95
0
76
46
23
0
29
1.52
90321180--90321216
12
3.2
12
88
3
58
32
10
8
48
1.67
90322648--90322713
31
2.1
31
91
0
105
48
19
12
19
1.80
90324150--90324225
38
2.0
38
86
0
107
35
21
21
22
1.96
90324573--90324622
22
2.3
21
82
3
64
24
0
30
46
1.53
90324578--90324612
15
2.4
14
86
9
52
22
0
31
45
1.53
90324879--90324921
22
2.0
22
85
0
59
11
0
48
39
1.40
90329120--90329187
19
3.7
19
90
7
113
36
14
13
35
1.85
90329544--90329645
45
2.3
45
84
0
132
26
25
12
35
1.92
90329728--90330030
44
6.8
45
71
9
131
27
22
17
32
1.96
90329635--90330124
134
3.6
134
86
0
640
27
22
17
32
1.96
90330177--90331008
44
18.9
44
69
15
384
28
24
16
30
1.96
90330221--90331008
176
4.5
176
88
1
1114
28
24
16
30
1.96
90330221--90331008
353
2.2
352
87
1
1159
28
24
16
30
1.96
90330794--90331156
132
2.8
131
83
5
462
29
24
15
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90336753--90336818
19
3.2
21
87
6
64
36
19
9
34
1.84
90336770--90336831
19
3.2
19
95
4
106
35
17
9
37
1.83
90338871--90339361
183
2.7
183
91
0
768
31
6
24
38
1.79
90338791--90339318
160
3.3
160
78
8
468
31
6
23
38
1.81
90338701--90339158
252
1.8
252
89
0
729
31
6
23
38
1.79
90338708--90339503
23
34.8
23
75
8
534
31
6
23
38
1.80
90340158--90340284
61
2.1
61
96
0
236
49
5
3
40
1.44
90340393--90340487
43
2.2
43
92
0
154
28
29
14
27
1.95
90340872--90340896
7
3.6
7
100
0
50
56
0
16
28
1.41
90342627--90342660
16
2.1
17
94
5
61
17
14
0
67
1.23
90342882--90342912
12
2.5
13
94
5
55
9
19
0
70
1.14
90354876--90355425
206
2.7
206
88
2
836
31
16
22
29
1.96
90357226--90357260
17
2.1
16
89
5
52
25
8
0
65
1.21
90358561--90358604
22
2.0
22
100
0
88
27
22
31
18
1.97
90359011--90359288
139
2.0
139
92
0
457
33
19
16
30
1.94
90359801--90359920
3
38.7
3
73
9
73
62
3
5
28
1.34
90360085--90360239
3
52.3
3
68
11
70
59
1
7
31
1.35
90360090--90360139
17
2.9
17
80
11
50
62
2
8
28
1.35
90360082--90360123
20
2.1
20
86
0
57
61
2
4
30
1.29
90360081--90360120
14
3.2
13
83
16
57
62
2
5
30
1.29
90360195--90360240
17
2.6
18
82
6
67
58
4
0
36
1.18
90360186--90360239
23
2.5
21
87
6
72
57
1
1
38
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90360207--90360247
21
2.0
21
85
0
55
56
4
2
36
1.34
90360315--90360370
13
4.2
13
74
19
53
64
1
7
26
1.29
90364099--90364323
121
1.9
119
79
11
253
48
4
9
36
1.58
90365345--90365452
26
4.2
26
93
0
189
32
7
24
36
1.83
90369239--90369314
24
3.2
24
77
7
75
64
5
9
21
1.42
90369256--90369313
18
3.1
18
72
18
55
63
6
10
18
1.47
90369251--90369334
39
2.2
37
79
8
87
64
5
8
21
1.43
90370815--90370967
44
3.5
44
80
7
157
24
19
23
32
1.97
90371187--90371311
45
2.8
44
79
7
137
29
24
16
29
1.97
90371197--90371311
44
2.6
45
82
6
137
29
24
18
27
1.98
90371330--90371456
52
2.4
52
92
0
209
33
17
15
33
1.92
90371571--90371674
44
2.4
44
83
6
122
25
25
19
28
1.98
90371605--90371701
44
2.2
44
81
3
106
22
27
19
29
1.98
90371605--90372389
133
5.9
132
79
9
618
24
25
20
29
1.99
90372267--90372477
88
2.4
88
90
0
323
26
25
20
27
1.99
90372134--90372545
221
1.9
221
89
3
641
25
25
17
30
1.98
90371759--90372389
133
4.7
133
86
1
888
25
25
19
29
1.99
90378653--90378837
79
2.3
82
84
7
238
25
27
22
24
2.00
90378634--90378837
40
5.1
40
82
8
238
25
27
22
25
2.00
90381551--90381669
50
2.4
49
78
12
120
63
4
6
26
1.38
90381617--90381669
22
2.5
21
87
3
70
62
1
7
28
1.33
90381599--90381806
3
71.3
3
65
11
76
62
2
7
26
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90394060--90394125
12
5.4
12
75
10
53
34
4
0
60
1.17
90394046--90394121
25
3.0
25
77
11
66
31
3
0
64
1.12
90394172--90394238
35
1.9
35
82
11
84
38
2
2
55
1.31
90394277--90394316
21
1.9
21
85
10
55
30
5
0
65
1.14
90394277--90394349
10
7.2
10
72
18
53
32
6
0
60
1.23
90394367--90394402
7
5.0
7
86
6
54
30
2
0
66
1.06
90394367--90394407
15
2.8
14
82
10
55
31
2
2
63
1.20
90396972--90397001
12
2.5
12
100
0
60
66
6
10
16
1.41
90399537--90399584
15
3.1
15
83
13
62
77
0
2
20
0.88
90402340--90402372
12
2.8
12
95
0
57
66
3
9
21
1.33
90403288--90403349
27
2.3
26
78
8
70
51
11
0
37
1.38
90405598--90405703
26
4.1
26
93
0
185
33
7
23
35
1.83
90412616--90412645
14
2.1
14
100
0
60
80
0
0
20
0.72
90412687--90412718
15
2.1
15
94
0
55
65
0
3
31
1.08
90413756--90413787
8
4.0
8
91
0
55
3
25
25
46
1.67
90414518--90414677
26
6.2
26
98
0
302
35
25
7
31
1.84
90415117--90415169
27
2.0
27
84
0
70
60
5
7
26
1.46
90415490--90415514
13
1.9
13
100
0
50
76
0
0
24
0.80
90415846--90415907
19
3.2
19
90
4
97
38
9
16
35
1.81
90417373--90417429
23
2.6
22
81
8
62
61
5
1
31
1.28
90419068--90419128
4
15.2
4
92
0
77
42
31
1
24
1.64
90421945--90422013
27
2.6
27
86
4
95
27
11
17
43
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90425464--90425559
27
3.6
27
81
0
93
27
10
16
45
1.80
90427438--90427463
11
2.4
11
100
0
52
53
0
7
38
1.30
90431887--90431925
4
9.8
4
100
0
78
51
23
0
25
1.49
90449721--90449755
17
2.1
17
100
0
70
54
17
5
22
1.64
90451513--90451556
13
3.4
13
80
0
52
38
25
0
36
1.56
90451639--90451959
46
7.0
46
90
1
401
21
21
14
41
1.89
90454338--90454373
19
1.9
19
88
5
56
0
22
2
75
0.94
90454581--90454627
21
2.1
21
84
7
58
46
4
2
46
1.34
90454756--90454802
19
2.4
21
79
13
55
48
4
0
46
1.21
90458072--90458157
30
2.9
30
91
0
145
15
52
6
25
1.67
90458675--90458748
24
3.0
24
73
23
73
31
4
1
63
1.21
90458954--90459010
17
3.1
19
78
14
66
31
0
7
61
1.23
90459095--90459124
12
2.5
12
94
0
51
46
6
0
46
1.29
90475301--90476686
87
16.0
87
84
5
1451
35
21
22
20
1.96
90475301--90476686
173
8.0
173
85
5
1495
35
21
22
20
1.96
90475321--90476671
44
31.3
44
66
12
321
35
21
22
19
1.96
90476487--90476636
43
3.4
45
69
16
134
38
19
22
20
1.93
90477205--90477289
30
2.8
30
98
0
161
16
51
7
24
1.69
90481898--90481982
30
2.8
30
98
0
161
16
51
7
24
1.69
90482486--90482557
15
4.7
15
76
15
60
23
6
1
68
1.22
90498012--90498461
112
4.0
112
100
0
900
24
14
20
40
1.90
90498547--90498663
59
2.0
59
100
0
234
17
13
20
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90508678--90509354
336
2.0
337
96
0
1239
38
17
15
27
1.90
90512317--90512357
15
2.8
15
81
3
57
46
2
7
43
1.44
90522336--90522387
21
2.4
22
78
12
54
46
0
21
32
1.52
90524697--90524845
37
4.1
37
81
4
158
16
14
28
40
1.87
90529064--90529097
17
2.0
18
88
11
54
47
0
11
41
1.40
90530726--90530763
19
2.1
19
90
9
62
76
0
23
0
0.79
90531386--90531788
201
2.0
201
100
0
806
39
9
18
32
1.84
90532657--90532704
23
2.0
24
84
15
64
60
4
0
35
1.16
90534508--90534645
71
1.9
71
98
0
267
41
2
6
49
1.43
90542721--90542768
25
1.9
25
91
8
80
14
14
2
68
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313