genome.fa.s26.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  178  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55353611--55353643	15	2.2	15	89	10	50	81	0	9	9	0.87
55354795--55355018	76	2.9	75	84	3	279	24	20	22	32	1.98
55354951--55355096	36	3.9	36	74	8	114	24	20	23	31	1.98
55361200--55361353	26	5.9	26	81	6	159	24	13	25	35	1.93
55361174--55361355	52	3.5	52	84	4	206	23	12	26	36	1.91
55365514--55365550	18	2.1	18	90	10	58	40	2	24	32	1.69
55372325--55372375	25	2.0	25	92	0	84	27	15	23	33	1.95
55377006--55377032	10	2.7	10	100	0	54	44	0	0	55	0.99
55377021--55377053	16	2.0	17	94	5	59	42	6	0	51	1.26
55394606--55394635	15	1.9	16	93	6	53	53	6	0	40	1.27
55395163--55395200	20	1.9	20	88	0	58	28	2	5	63	1.30
55395829--55395868	20	1.9	22	90	10	66	50	0	0	50	1.00
55395970--55396055	39	2.2	39	85	4	111	38	2	8	51	1.45
55397796--55397845	26	1.9	26	91	0	82	28	10	20	42	1.84
55398912--55398958	3	16.0	3	82	12	62	65	0	2	31	1.04
55398965--55399005	16	2.6	16	85	11	57	73	9	17	0	1.09
55399963--55400051	25	3.5	26	69	18	71	20	23	22	33	1.97
55400007--55400113	24	4.4	23	77	14	83	15	27	24	32	1.96
55400032--55400150	24	4.9	25	77	7	111	16	28	22	31	1.96
55401754--55401830	27	2.9	27	90	0	109	27	22	41	9	1.83
55401879--55401950	10	6.6	10	76	17	63	69	0	30	0	0.89
55401882--55401955	14	5.1	13	71	25	51	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55401879--55401954	28	2.5	30	82	16	95	69	0	30	0	0.88
55401877--55401985	38	3.1	37	81	11	129	65	0	33	0	0.99
55401899--55401961	10	6.5	10	75	14	51	68	0	31	0	0.90
55401882--55401961	34	2.8	28	75	24	85	68	0	31	0	0.90
55402059--55402211	68	2.2	68	100	0	306	56	6	9	26	1.56
55404927--55404980	24	2.2	25	80	12	58	11	5	1	81	0.93
55404972--55405041	29	2.5	29	90	9	110	50	0	10	40	1.36
55405084--55405119	18	2.0	18	88	0	54	69	5	0	25	1.10
55405790--55405905	35	3.3	34	80	17	105	0	31	0	68	0.96
55405784--55405902	38	3.0	39	75	15	102	1	31	0	66	1.02
55405855--55405931	28	2.5	31	74	17	81	1	33	0	64	1.01
55406062--55406102	17	2.4	17	95	0	73	2	4	7	85	0.81
55408198--55408246	21	2.3	22	78	3	55	32	2	6	59	1.34
55412506--55412546	21	2.0	21	95	0	73	24	24	29	21	1.99
55414772--55414813	13	3.4	13	74	12	52	38	4	2	54	1.34
55422499--55422556	15	3.9	15	72	0	53	39	34	15	10	1.81
55425790--55425816	4	6.8	4	100	0	54	25	0	48	25	1.52
55427330--55427360	14	2.2	14	94	0	53	25	0	29	45	1.54
55435974--55436064	44	2.1	44	100	0	182	21	18	30	28	1.97
55436354--55436440	27	3.2	27	91	3	131	42	22	16	18	1.89
55436364--55436497	71	1.9	72	87	1	198	41	21	17	20	1.91
55436437--55436514	27	2.9	27	84	1	104	42	15	17	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55436437--55436527	27	3.4	26	79	7	94	40	16	15	27	1.88
55442596--55442634	13	3.0	12	85	14	51	53	15	17	12	1.72
55444664--55444737	37	2.0	37	89	0	112	35	27	9	28	1.88
55444950--55445043	41	2.3	41	92	0	152	24	28	19	27	1.98
55444980--55445114	71	1.9	70	95	0	234	25	28	14	30	1.95
55445051--55445155	41	2.6	41	92	0	165	25	28	15	30	1.96
55444956--55445160	112	1.8	111	95	1	374	25	28	15	29	1.96
55445369--55445405	19	1.9	19	88	0	56	45	16	0	37	1.47
55465071--55465103	17	2.0	17	94	5	59	54	3	0	42	1.15
55467406--55467482	19	3.7	21	76	13	68	41	16	3	37	1.67
55467442--55467495	19	2.8	19	94	0	99	37	16	9	37	1.81
55467849--55467898	18	2.8	18	84	3	75	54	2	0	44	1.11
55469240--55469295	27	2.1	27	93	0	94	37	14	17	30	1.90
55469545--55469584	21	1.9	21	85	10	55	32	2	7	57	1.40
55472700--55472754	22	2.4	23	82	14	78	25	29	1	43	1.65
55472700--55472754	11	4.9	11	80	8	67	25	29	1	43	1.65
55472769--55472805	11	3.2	12	88	7	51	29	18	0	51	1.47
55473957--55473988	7	4.6	7	100	0	64	28	0	12	59	1.34
55474640--55474679	18	2.2	18	90	0	62	20	30	5	45	1.72
55475220--55475273	7	8.0	7	79	6	58	42	37	1	18	1.61
55475233--55475271	20	2.0	20	94	0	69	43	38	2	15	1.60
55475261--55475303	22	2.0	22	95	4	79	44	27	0	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55475233--55475406	27	6.5	28	66	25	83	40	33	1	24	1.63
55475313--55475403	20	4.4	21	78	12	100	38	36	1	24	1.63
55475255--55475399	63	2.3	61	80	13	145	40	32	1	25	1.64
55475261--55475399	21	6.6	21	74	9	115	41	32	0	25	1.61
55478483--55478928	126	3.5	126	89	2	646	29	22	16	31	1.96
55479045--55479074	9	3.3	9	90	0	51	60	26	0	13	1.34
55479059--55479100	21	2.0	22	90	4	68	54	33	0	11	1.37
55480192--55480222	16	1.9	16	93	0	53	19	22	22	35	1.96
55481010--55481053	21	2.1	21	83	8	54	34	18	20	27	1.96
55485597--55485637	21	2.0	21	95	0	73	17	29	21	31	1.96
55485673--55485958	143	2.0	143	100	0	572	28	17	11	42	1.83
55486671--55486713	19	2.4	19	88	7	63	37	16	11	34	1.85
55486681--55486746	22	3.1	22	89	6	93	40	10	15	33	1.81
55487438--55487512	27	2.8	26	70	22	64	34	6	1	57	1.33
55489283--55489316	18	1.9	17	94	5	59	17	20	14	47	1.83
55492078--55493859	45	40.0	45	77	5	1540	29	17	23	29	1.97
55493074--55493568	44	11.3	43	65	10	135	28	18	24	28	1.98
55493082--55493568	43	11.1	44	65	9	177	28	18	24	28	1.98
55493662--55493817	44	3.5	44	70	6	127	30	19	27	22	1.98
55493631--55493945	89	3.5	89	80	3	276	29	20	23	26	1.99
55493953--55494214	131	2.0	132	87	3	377	29	19	26	24	1.99
55494681--55494734	19	2.8	19	100	0	108	37	11	16	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55495024--55495056	15	2.1	16	94	5	59	30	9	0	60	1.27
55497841--55497913	10	7.5	10	73	6	69	31	2	1	64	1.16
55497841--55497913	19	3.8	19	75	7	67	31	2	1	64	1.16
55497840--55497913	29	2.6	29	82	4	96	32	2	1	63	1.17
55498074--55498311	88	2.7	87	84	5	300	32	7	22	36	1.83
55508570--55508646	32	2.4	32	80	0	91	24	24	6	44	1.77
55515022--55515298	137	2.0	137	97	0	518	46	11	13	28	1.78
55522902--55522936	15	2.3	15	95	0	61	31	17	2	48	1.61
55522909--55522941	15	2.2	15	94	0	57	42	12	6	39	1.67
55523051--55523164	61	1.9	60	83	5	151	50	8	4	36	1.54
55523142--55523193	20	2.8	18	73	21	54	50	5	3	40	1.45
55527989--55528023	15	2.2	16	90	5	54	42	0	5	51	1.25
55548511--55548555	23	2.0	23	81	0	54	51	0	2	46	1.13
55551113--55551143	16	1.9	16	100	0	62	48	6	25	19	1.72
55557560--55557605	24	1.9	24	95	0	83	39	2	30	28	1.69
55557561--55557612	24	2.2	24	85	0	68	46	1	26	25	1.63
55557935--55558070	11	12.4	11	64	9	53	23	4	6	65	1.35
55558533--55558581	19	2.8	17	79	14	55	42	0	30	26	1.55
55562992--55563017	2	13.0	2	100	0	52	50	0	0	50	1.00
55573004--55573326	43	7.5	43	85	3	400	23	26	19	30	1.98
55573628--55573698	21	3.4	21	78	3	72	7	42	14	36	1.72
55573648--55573838	87	2.2	87	93	1	321	13	29	16	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55574497--55574576	31	2.6	31	87	0	106	46	20	15	18	1.84
55575736--55575853	45	2.5	46	80	6	130	31	8	15	44	1.76
55575985--55576010	7	3.7	7	100	0	52	46	26	0	26	1.53
55576061--55576097	14	2.6	14	91	0	56	37	43	0	18	1.51
55576103--55576141	7	5.6	7	84	0	51	51	33	0	15	1.44
55576186--55576289	7	14.6	7	65	15	52	37	40	0	21	1.60
55576190--55576270	21	3.8	22	77	9	69	34	45	1	18	1.57
55576237--55576294	22	2.7	22	83	2	73	39	34	0	25	1.56
55576276--55576362	39	2.2	39	91	4	140	48	21	2	27	1.62
55576385--55576425	15	2.8	14	85	10	55	43	34	0	21	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313