genome.fa.s26.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  124  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40099443--40099484	15	2.7	16	82	14	52	52	2	0	45	1.13
40099452--40099493	15	2.9	15	82	10	52	52	0	0	47	1.00
40099446--40099707	120	2.2	120	97	0	490	49	5	2	42	1.39
40099561--40099612	15	3.6	15	80	12	56	53	1	0	44	1.11
40104389--40104451	23	2.7	23	83	16	85	53	22	6	17	1.65
40104389--40104463	23	3.3	22	78	12	64	56	21	5	17	1.61
40105693--40105750	30	1.9	30	96	0	107	46	22	18	12	1.82
40110798--40110873	9	8.4	9	86	5	109	44	22	7	25	1.79
40110788--40110873	27	3.2	27	83	6	120	45	20	6	26	1.77
40110986--40111028	18	2.4	18	88	0	59	11	2	44	41	1.53
40112073--40112111	21	1.9	21	89	5	62	20	30	15	33	1.94
40112891--40112942	24	2.2	24	85	0	68	48	11	3	36	1.58
40118311--40118440	50	2.6	50	72	11	131	22	26	21	29	1.99
40121272--40121320	19	2.6	19	96	0	89	14	36	10	38	1.80
40122344--40122397	24	2.2	24	86	0	72	50	9	5	35	1.58
40131108--40131146	20	1.9	21	89	5	62	53	12	5	28	1.60
40141739--40141778	16	2.5	16	95	0	71	37	0	22	40	1.54
40142149--40142243	36	2.6	36	96	0	172	27	12	32	27	1.93
40144290--40144526	118	2.0	118	98	0	456	32	18	17	30	1.94
40146808--40146841	6	5.7	6	100	0	68	17	0	50	32	1.47
40148696--40148742	20	2.3	20	88	3	67	72	6	19	2	1.17
40149150--40149191	20	2.1	20	86	0	57	57	2	9	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40150601--40150653	26	2.0	26	85	7	72	69	1	26	1	1.09
40157738--40157832	45	2.1	46	98	2	183	44	4	4	47	1.42
40158374--40158420	18	2.5	19	96	3	87	36	12	14	36	1.85
40158708--40158742	18	1.9	18	88	11	54	28	0	0	71	0.86
40168986--40169254	78	3.4	78	89	1	405	33	17	23	25	1.96
40169280--40169477	45	4.4	45	85	1	254	31	16	28	24	1.96
40169280--40169477	89	2.2	90	85	3	274	31	16	28	24	1.96
40169323--40169512	89	2.1	89	81	5	215	30	16	28	24	1.96
40169818--40169860	19	2.4	19	88	7	63	37	13	11	37	1.82
40169826--40169862	19	1.9	19	100	0	74	37	10	16	35	1.83
40169826--40169885	19	2.8	22	85	9	72	36	8	16	38	1.79
40170863--40170924	13	4.8	12	73	11	52	53	0	14	32	1.41
40170861--40170931	26	2.8	25	83	10	81	53	0	15	30	1.42
40170954--40171018	32	2.0	32	100	0	130	44	18	12	24	1.84
40181514--40181569	26	2.2	26	93	0	94	30	5	25	39	1.78
40184077--40184127	25	2.0	25	100	0	102	27	27	5	39	1.79
40190032--40190258	40	5.7	40	97	0	418	19	20	29	31	1.97
40191579--40191634	26	2.2	26	93	0	94	30	5	25	39	1.78
40195933--40195962	9	3.2	9	95	4	51	33	0	0	66	0.92
40202557--40202644	43	2.0	44	86	2	124	47	7	19	25	1.76
40202624--40202687	32	2.1	30	88	11	94	48	6	18	26	1.72
40205676--40205852	86	2.1	85	92	1	291	41	14	12	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40205832--40205872	20	2.0	20	100	0	82	51	9	4	34	1.56
40205746--40205938	106	1.8	106	98	0	377	41	13	11	32	1.81
40206854--40206941	30	2.9	30	89	3	124	45	21	27	5	1.74
40209195--40209313	23	5.1	23	70	14	64	32	24	26	16	1.96
40211422--40211470	3	17.3	3	76	19	52	69	0	2	28	1.00
40211428--40211466	11	3.5	11	92	0	69	69	0	2	28	1.02
40211429--40211470	19	2.2	19	87	8	59	71	0	2	26	0.98
40211440--40211504	19	3.3	21	81	8	66	60	4	1	33	1.27
40211713--40211771	30	1.9	31	86	3	84	28	22	3	45	1.68
40211713--40211781	30	2.3	31	82	7	79	28	20	5	44	1.74
40212574--40212612	18	2.2	18	90	9	62	35	12	7	43	1.72
40214129--40214180	22	2.3	23	87	9	81	55	7	26	9	1.59
40221583--40221617	18	2.1	17	89	10	54	45	0	17	37	1.48
40222209--40222271	31	2.0	31	96	0	117	44	9	17	28	1.80
40224297--40224465	84	2.0	84	96	0	311	16	32	9	41	1.81
40224586--40224616	15	2.1	15	94	5	55	51	0	6	41	1.27
40224918--40225005	42	2.1	42	91	0	140	23	17	21	37	1.94
40225431--40225470	21	1.9	21	85	10	55	57	0	2	40	1.12
40227297--40227376	26	3.0	26	80	3	88	30	5	7	57	1.48
40232326--40232354	14	2.0	15	93	6	51	27	27	17	27	1.97
40241070--40241215	43	3.4	42	84	6	193	28	21	22	26	1.99
40245613--40245797	73	2.5	75	92	1	311	27	10	9	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40246143--40246293	21	6.8	21	74	11	131	45	27	0	26	1.59
40246127--40246216	46	2.0	46	93	0	153	43	26	2	27	1.67
40246143--40246293	67	2.3	67	92	0	248	45	27	0	26	1.59
40246144--40246301	7	21.4	7	68	12	57	46	27	0	25	1.58
40246484--40246543	30	2.0	31	86	3	86	11	18	26	43	1.84
40249983--40250008	8	3.2	8	100	0	52	50	0	0	50	1.00
40251000--40251042	6	6.8	6	79	10	50	46	0	4	48	1.22
40250990--40251040	26	2.0	26	88	0	75	49	3	3	43	1.39
40251001--40251040	20	2.0	20	90	0	62	47	0	5	47	1.24
40255115--40255288	88	2.0	88	85	8	239	31	18	12	37	1.88
40259648--40259673	6	4.3	6	100	0	52	15	0	0	84	0.62
40262009--40262036	3	9.3	3	100	0	56	32	0	0	67	0.91
40262590--40262649	31	1.9	31	83	6	77	41	8	13	36	1.74
40263118--40263186	32	2.2	32	84	10	88	47	4	4	43	1.42
40263125--40263186	32	1.9	33	87	9	92	50	3	4	41	1.40
40268329--40268415	44	2.0	44	97	0	165	21	5	11	60	1.51
40277958--40278020	31	2.0	31	90	6	101	42	12	11	33	1.78
40288638--40288687	25	2.0	25	100	0	100	40	32	8	20	1.81
40292586--40292635	20	2.4	21	90	3	75	32	26	8	34	1.85
40299668--40299707	9	4.3	9	90	3	62	55	5	0	40	1.22
40301356--40301487	40	3.3	40	73	9	119	27	13	25	34	1.93
40302579--40303713	567	2.0	567	99	0	2261	34	17	11	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40304707--40304746	16	2.5	15	84	11	53	0	27	7	65	1.20
40304785--40304826	9	3.8	11	85	14	52	57	4	0	38	1.20
40304778--40304812	3	11.0	3	88	11	52	62	2	0	34	1.10
40306347--40306394	23	2.0	24	84	11	64	47	2	6	43	1.40
40307348--40307775	139	3.1	139	90	1	635	23	12	13	50	1.75
40307348--40307775	140	3.1	138	89	2	626	23	12	13	50	1.75
40307669--40308148	119	3.9	120	73	12	389	27	14	13	44	1.83
40307790--40308251	134	3.5	133	74	14	483	27	15	14	42	1.85
40307516--40308251	254	2.9	249	84	6	866	25	14	14	45	1.82
40309593--40310599	503	2.0	503	99	0	1978	25	19	25	29	1.99
40315312--40315375	30	2.1	30	97	0	119	35	20	4	39	1.73
40321084--40321171	37	2.4	38	76	17	96	65	4	1	28	1.19
40321134--40321189	28	2.0	28	86	6	78	67	5	0	26	1.11
40321216--40321250	17	2.0	18	94	5	63	68	0	0	31	0.90
40321216--40321252	10	4.0	10	80	20	53	70	0	0	29	0.88
40321710--40321752	22	2.0	22	90	0	68	37	0	4	58	1.19
40322027--40322096	28	2.5	27	80	11	79	27	1	2	68	1.12
40322066--40322115	26	1.9	26	83	0	64	28	2	2	68	1.12
40323650--40325499	265	7.0	262	76	10	1228	24	13	24	37	1.91
40324155--40325500	522	2.6	522	83	5	1662	23	12	25	38	1.90
40325325--40325694	194	2.0	184	82	6	454	26	14	24	34	1.93
40325509--40327264	265	6.7	263	76	10	1307	24	13	25	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40325632--40327081	522	2.8	521	83	5	1682	23	12	24	38	1.90
40338819--40338869	20	2.5	20	96	0	93	35	23	3	37	1.74
40338941--40339001	30	2.1	28	85	11	79	44	9	0	45	1.37
40341971--40342063	36	2.5	36	81	13	109	32	23	2	41	1.66
40342440--40342464	13	1.9	13	100	0	50	44	0	0	56	0.99
40349779--40349830	22	2.3	21	78	12	50	69	11	15	3	1.32
40350345--40350378	7	4.9	7	100	0	68	0	11	14	73	1.10
40353167--40353199	9	3.7	9	95	0	57	39	12	18	30	1.87
40356476--40356738	125	2.1	128	83	5	329	36	16	13	33	1.88
40356900--40357260	3	120.3	3	65	17	83	60	3	7	28	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313