genome.fa.s26.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  152  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48283164--48283195	16	1.9	17	93	6	57	40	0	21	37	1.54
48297097--48297137	19	2.0	20	90	9	66	31	19	0	48	1.49
48298010--48298067	27	2.1	28	96	3	109	51	17	1	29	1.55
48303812--48303989	27	6.6	27	84	3	205	29	28	15	26	1.96
48303833--48303988	82	1.9	81	88	3	233	29	28	15	26	1.96
48311874--48312051	27	6.6	27	77	6	137	30	28	15	25	1.96
48311874--48312051	54	3.3	54	78	7	164	30	28	15	25	1.96
48324750--48324780	16	1.9	16	93	0	53	54	0	3	41	1.16
48327908--48328156	127	2.0	127	84	0	327	36	24	10	29	1.88
48330537--48330583	23	2.0	23	100	0	94	44	17	12	25	1.84
48330764--48330817	25	2.2	25	89	0	81	25	14	12	46	1.81
48331502--48331551	25	2.0	25	100	0	100	20	28	16	36	1.93
48333926--48334013	26	3.4	26	75	17	69	26	4	1	68	1.16
48333977--48334023	23	2.1	21	84	11	58	19	2	2	76	0.99
48334404--48334617	93	2.3	92	75	13	226	39	20	7	32	1.81
48334666--48334720	18	3.1	18	76	12	60	61	0	0	38	0.96
48334646--48334721	37	2.1	37	82	9	93	60	0	2	36	1.11
48335101--48335146	13	3.6	13	80	13	51	47	2	2	47	1.26
48335749--48335800	24	2.2	24	89	0	77	50	9	3	36	1.54
48336062--48336100	18	2.2	18	95	0	69	30	28	15	25	1.96
48339965--48340016	24	2.2	24	89	0	77	50	9	3	36	1.54
48341239--48341315	24	3.2	24	63	23	63	57	6	12	23	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48341241--48341335	47	2.0	47	100	0	190	57	6	12	23	1.57
48344121--48344162	12	3.6	12	77	6	50	40	21	14	23	1.90
48344097--48344162	23	2.9	23	84	4	89	40	19	12	27	1.87
48350297--48350383	8	10.6	8	80	16	90	20	1	2	75	0.97
48350327--48350388	7	8.4	7	80	19	65	19	0	0	80	0.71
48350297--48350384	28	3.2	27	80	7	81	20	1	2	76	0.97
48350620--48350901	107	2.6	107	94	0	494	29	15	19	35	1.93
48351846--48351880	16	2.2	16	100	0	70	17	17	22	42	1.88
48356990--48357043	11	4.6	11	77	11	54	83	0	16	0	0.65
48356995--48357049	17	3.2	17	86	0	74	81	1	16	0	0.77
48356993--48357049	28	2.0	28	86	6	80	82	1	15	0	0.75
48357995--48358048	24	2.2	24	86	0	81	31	11	27	29	1.91
48358317--48358527	44	4.8	44	76	8	221	27	25	23	23	2.00
48358317--48358525	89	2.3	89	91	2	339	27	25	23	23	2.00
48358528--48358970	132	3.4	132	90	0	699	31	16	24	27	1.97
48359967--48360020	24	2.2	24	86	0	81	31	11	27	29	1.91
48360289--48360499	44	4.8	44	76	8	221	27	25	23	23	2.00
48360289--48360497	89	2.3	89	91	2	339	27	25	23	23	2.00
48360500--48360942	132	3.4	132	90	0	699	31	16	24	27	1.97
48362751--48362822	8	9.6	8	75	22	68	25	1	1	72	1.01
48362752--48362827	17	4.7	15	78	12	64	23	1	1	73	0.98
48362772--48362826	3	19.3	3	75	17	55	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48362757--48362827	14	5.0	14	76	11	65	23	1	1	73	1.00
48362751--48362827	22	3.9	19	73	17	68	24	1	1	72	1.00
48362754--48362830	20	3.9	20	71	25	58	24	1	1	72	1.00
48363062--48363337	107	2.6	107	92	0	462	29	14	19	36	1.91
48364214--48364256	21	2.0	21	86	0	59	46	16	9	27	1.77
48369301--48369410	49	2.2	49	95	0	202	31	14	12	40	1.84
48376174--48376241	34	2.0	34	100	0	136	23	29	17	29	1.97
48381885--48382153	51	5.6	50	67	13	177	29	18	17	34	1.94
48381834--48382154	95	3.4	95	83	3	405	29	18	17	34	1.94
48393867--48393908	4	10.8	4	80	14	52	71	0	4	23	1.05
48401412--48401861	225	2.0	225	100	0	900	28	17	24	29	1.97
48402454--48402499	2	23.0	2	95	0	83	50	2	47	0	1.13
48407837--48407870	6	5.7	6	96	0	59	20	17	26	35	1.95
48407831--48407870	18	2.2	18	86	0	53	22	17	22	37	1.94
48416403--48416465	31	2.0	33	84	6	85	41	14	11	33	1.81
48418012--48418081	29	2.4	29	78	19	76	52	2	1	42	1.24
48418050--48418106	20	2.8	19	84	7	60	47	3	0	49	1.18
48420307--48420494	43	4.3	43	83	7	227	31	33	17	18	1.93
48420307--48420494	89	2.2	86	83	8	229	31	33	17	18	1.93
48423709--48423816	54	2.0	54	98	0	207	30	25	13	29	1.94
48425723--48425899	89	2.0	89	87	0	255	44	29	1	24	1.61
48425986--48426019	15	2.3	15	95	5	61	35	26	0	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48426427--48426578	41	3.7	41	83	2	207	28	25	23	23	2.00
48426636--48426751	40	2.9	40	82	8	148	24	21	20	33	1.97
48426831--48426856	3	8.7	3	100	0	52	34	0	30	34	1.58
48428350--48428398	23	2.1	24	92	3	82	71	6	14	8	1.29
48441027--48441053	12	2.2	12	100	0	54	22	7	33	37	1.82
48444135--48445485	676	2.0	677	96	0	2517	30	15	22	32	1.94
48447689--48447877	59	3.2	57	67	19	143	41	3	4	50	1.39
48447716--48447914	66	3.2	64	66	19	177	40	3	7	49	1.45
48447678--48447970	120	2.4	120	95	1	525	41	2	5	50	1.38
48447751--48447938	61	3.1	61	70	14	208	42	1	7	48	1.40
48447803--48447854	15	3.6	15	80	12	56	44	0	1	53	1.11
48447752--48447935	59	3.1	59	67	22	175	41	1	7	48	1.41
48447932--48447975	16	2.8	16	83	13	56	45	0	2	52	1.13
48448109--48448206	45	2.2	44	85	5	135	36	26	3	33	1.72
48448185--48448238	16	3.4	16	89	0	81	27	33	1	37	1.68
48453305--48453410	26	4.2	26	81	3	110	40	21	7	30	1.81
48453305--48453410	25	4.2	25	80	6	88	40	21	7	30	1.81
48456123--48456224	30	3.4	30	78	8	134	45	0	5	49	1.26
48456113--48456258	61	2.4	61	91	1	238	43	0	6	50	1.32
48458164--48458216	25	2.2	25	82	3	63	18	26	22	32	1.97
48462794--48462892	23	4.4	23	82	2	112	38	20	19	22	1.94
48463842--48463910	28	2.3	30	87	7	97	53	5	0	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48463842--48463913	29	2.5	27	78	14	72	52	5	0	41	1.24
48465402--48465544	70	2.0	70	98	0	277	54	7	13	23	1.65
48467321--48467454	68	2.0	68	83	2	171	39	15	22	22	1.92
48467511--48467562	27	1.9	27	96	0	95	32	13	26	26	1.94
48469634--48469686	26	2.0	26	100	0	106	54	15	3	26	1.57
48472835--48472870	18	2.0	18	88	0	54	75	8	0	16	1.04
48478416--48478447	16	1.9	17	93	6	57	37	21	0	40	1.54
48478651--48478750	41	2.4	42	81	6	114	35	26	15	24	1.94
48478608--48478770	43	3.9	42	74	10	143	33	25	15	25	1.95
48481044--48481083	21	1.9	21	84	0	53	47	0	30	22	1.52
48482368--48482433	25	2.6	25	80	9	71	19	15	6	59	1.57
48483200--48483266	1	67.0	1	75	0	53	86	4	4	4	0.78
48483196--48483278	15	5.5	15	77	17	66	81	7	3	7	0.96
48483196--48483298	36	2.9	34	80	16	113	80	6	4	7	1.01
48484154--48484248	47	2.0	48	87	6	140	43	18	23	14	1.87
48485622--48485829	44	4.8	44	80	0	247	26	13	27	31	1.94
48485618--48485829	88	2.4	88	92	0	363	27	13	27	32	1.94
48485981--48486977	100	10.0	100	90	0	1510	34	21	20	23	1.97
48485998--48486977	50	19.6	50	71	1	674	34	22	19	23	1.97
48490160--48490219	14	4.5	13	83	6	59	5	16	1	76	1.04
48499238--48499306	34	2.0	34	85	0	93	49	10	8	31	1.67
48499272--48507783	708	12.0	709	91	1	13823	33	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48507751--48507815	32	2.0	32	100	0	130	46	9	9	35	1.68
48508799--48508858	28	2.2	27	81	3	66	63	5	15	16	1.47
48511400--48511636	43	5.5	43	76	8	196	23	27	20	28	1.99
48511400--48511614	86	2.5	85	81	3	252	23	27	20	28	1.99
48511993--48512037	21	2.1	21	84	8	56	6	51	13	28	1.66
48517536--48517865	16	20.1	16	69	17	125	30	3	19	46	1.67
48517524--48517602	25	3.2	25	84	7	92	34	2	16	46	1.60
48517604--48517792	25	7.2	25	75	12	166	29	5	18	46	1.71
48517536--48517809	41	6.4	42	73	15	197	30	4	17	47	1.67
48517562--48517809	108	2.3	107	80	8	279	29	4	18	47	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313