genome.fa.s26.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  93  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30994269--30994302	17	2.0	17	94	0	59	14	17	23	44	1.86
30996401--30996449	23	2.1	23	85	7	64	75	0	14	10	1.04
30997133--30997173	16	2.6	17	81	14	52	53	0	2	43	1.13
31003987--31004061	36	2.1	36	94	0	132	40	14	20	25	1.90
31006243--31006300	28	2.1	28	100	0	116	10	22	31	36	1.88
31022335--31022371	19	1.9	19	94	0	65	32	18	18	29	1.96
31024477--31024567	45	2.0	45	85	2	121	37	28	6	27	1.82
31026000--31026034	18	2.0	17	88	5	52	45	0	0	54	0.99
31025893--31026176	120	2.4	120	90	2	446	44	1	4	48	1.34
31026120--31026154	18	2.0	17	88	5	52	45	0	0	54	0.99
31026120--31026174	15	3.4	16	80	16	53	47	0	1	50	1.11
31026390--31026457	16	4.2	16	96	0	127	38	35	0	26	1.57
31035046--31035105	29	2.1	29	96	0	111	26	8	15	50	1.72
31046726--31046795	31	2.3	31	85	2	88	58	4	0	37	1.18
31057802--31057976	70	2.5	70	87	0	235	28	14	23	34	1.94
31057994--31058336	72	4.5	75	86	5	399	33	15	19	31	1.93
31058559--31058803	88	2.8	86	82	4	276	28	17	18	34	1.94
31058725--31059562	73	11.1	73	82	9	835	29	17	19	33	1.95
31058734--31059562	307	2.7	292	82	8	892	29	17	19	33	1.95
31059024--31059316	159	1.9	159	89	1	464	30	17	21	31	1.96
31059251--31059636	159	2.4	159	81	6	442	26	18	20	33	1.96
31058637--31059546	232	4.0	230	82	8	935	29	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31059488--31059813	92	3.7	89	79	8	342	28	18	18	34	1.95
31060494--31060556	22	2.9	22	87	0	99	25	50	11	12	1.73
31064559--31064664	37	2.8	38	77	16	105	50	0	13	34	1.47
31065477--31065512	11	3.2	11	88	4	54	50	0	50	0	1.00
31065618--31065655	16	2.3	17	86	4	51	13	0	7	78	0.94
31067939--31067992	20	2.7	19	80	11	63	44	7	20	27	1.78
31068575--31068608	9	3.8	9	88	0	50	38	2	0	58	1.13
31068598--31068653	21	2.7	21	91	2	87	55	5	0	39	1.23
31069475--31069508	16	2.1	16	100	0	68	44	5	17	32	1.73
31070877--31071014	28	4.9	28	100	0	276	38	10	7	43	1.68
31078149--31078197	8	5.8	8	77	13	53	40	42	0	16	1.48
31078149--31078206	27	2.1	27	93	0	98	41	41	0	17	1.49
31079350--31079406	15	3.8	15	79	4	62	31	7	0	61	1.23
31080000--31080055	26	2.2	26	87	12	80	26	1	8	62	1.35
31090092--31090254	41	4.0	40	79	11	143	26	25	19	28	1.99
31093460--31093654	62	3.1	62	96	0	354	30	7	26	35	1.84
31095487--31095908	74	5.7	75	83	6	513	32	16	18	32	1.93
31095499--31095908	149	2.8	149	93	1	671	32	16	18	31	1.94
31096709--31096738	8	3.8	8	100	0	60	40	50	0	10	1.36
31098104--31098149	23	2.0	23	84	12	60	32	2	4	60	1.28
31098110--31098162	28	1.9	28	88	3	81	37	0	5	56	1.23
31098307--31098348	21	2.0	21	85	0	57	38	9	7	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31098547--31098606	25	2.5	24	79	12	61	31	3	6	58	1.40
31100909--31100937	6	4.8	6	100	0	58	34	0	0	65	0.93
31101085--31101116	16	2.0	16	100	0	64	37	18	12	31	1.88
31104135--31104191	18	2.9	21	77	17	59	47	7	1	43	1.40
31106330--31106373	23	2.0	23	90	4	72	52	0	0	47	1.00
31110435--31110487	16	3.3	16	71	10	54	69	5	0	24	1.09
31110527--31110570	20	2.2	20	88	8	63	2	6	18	72	1.17
31119775--31119830	21	2.7	21	88	0	85	12	35	30	21	1.90
31123036--31123074	21	1.9	20	89	5	60	46	20	0	33	1.51
31123382--31123433	16	3.2	16	94	0	86	28	0	36	34	1.58
31123414--31123508	45	2.1	44	88	1	136	34	5	27	32	1.79
31123670--31123704	18	2.0	17	88	5	52	54	0	0	45	0.99
31123628--31123700	27	2.7	27	76	8	76	52	2	0	45	1.15
31123817--31123851	18	2.0	17	88	5	52	54	0	0	45	0.99
31123589--31123863	147	1.9	149	96	1	509	46	3	2	47	1.33
31130196--31130234	5	7.6	5	83	16	53	20	0	2	76	0.90
31130196--31130225	14	2.1	14	93	6	51	20	0	0	80	0.72
31136801--31136838	19	2.0	19	100	0	76	36	10	10	42	1.74
31138655--31138865	105	2.0	105	90	0	332	18	27	17	36	1.93
31139998--31140042	9	4.8	9	86	10	63	33	11	22	33	1.89
31142651--31142777	52	2.4	52	98	0	245	43	14	15	25	1.86
31145250--31145284	3	11.7	3	100	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31154866--31154900	17	2.0	18	88	5	54	60	0	8	31	1.27
31154895--31154936	21	2.0	22	86	13	61	54	9	4	30	1.53
31155331--31155413	22	3.8	22	73	0	76	57	10	14	16	1.64
31157589--31157626	14	2.7	15	88	8	53	65	0	15	18	1.27
31161640--31161694	17	3.3	17	73	17	53	56	0	0	43	0.99
31167681--31167713	16	2.0	17	88	5	50	48	0	0	51	1.00
31173964--31174002	20	2.0	20	85	10	53	17	41	0	41	1.50
31174087--31174171	42	2.0	42	97	0	161	41	24	5	28	1.78
31176069--31176166	45	2.2	45	90	0	151	39	8	21	30	1.82
31182831--31182985	52	3.0	51	76	11	127	27	16	24	31	1.96
31182898--31183043	53	3.0	49	78	10	156	23	15	30	29	1.96
31184889--31185323	159	2.9	144	79	8	408	37	9	12	40	1.74
31185031--31185397	159	2.3	155	84	4	466	38	9	12	39	1.76
31191968--31192088	43	2.8	42	82	5	136	25	19	24	29	1.99
31199354--31199428	35	2.1	35	85	0	96	24	22	34	18	1.96
31201809--31201911	37	2.8	37	80	5	120	17	12	31	38	1.87
31205413--31205442	13	2.3	13	100	0	60	43	0	0	56	0.99
31213917--31213976	18	3.0	20	77	20	72	60	1	6	31	1.33
31216705--31216761	27	2.1	27	100	0	114	45	10	12	31	1.76
31227172--31227302	45	3.0	44	83	8	153	24	28	22	25	1.99
31227299--31227493	38	5.1	38	88	1	273	30	25	22	22	1.99
31227769--31227859	43	2.1	44	91	2	148	25	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31231526--31231566	21	2.0	21	95	0	73	12	36	0	51	1.40
31232933--31233005	25	2.9	25	89	0	110	28	24	21	24	1.99
31232935--31233017	25	3.4	25	82	11	84	30	21	22	25	1.99
31232933--31233030	50	2.0	50	82	8	119	29	23	22	24	1.99
31240870--31240920	10	4.8	11	83	7	70	37	11	17	33	1.86
31240870--31240920	21	2.4	21	93	0	84	37	11	17	33	1.86
31240966--31241037	25	2.9	25	85	4	101	29	23	20	26	1.99
31240966--31241043	24	3.2	24	83	8	104	32	23	19	25	1.98
31246025--31246059	14	2.5	14	100	0	70	17	14	20	48	1.81
31255002--31255045	23	1.9	23	100	0	88	31	4	38	25	1.76
31256958--31257047	40	2.3	39	83	10	114	14	15	32	37	1.88
31257877--31257927	24	2.3	21	76	20	59	43	29	0	27	1.55
31257889--31257935	24	2.0	24	100	0	94	42	31	0	25	1.55
31260654--31260766	57	2.0	58	89	3	176	46	6	17	29	1.72
31260852--31260898	22	2.1	22	100	0	94	31	4	25	38	1.75
31267917--31267955	21	1.9	20	100	0	69	28	12	10	48	1.74
31270096--31270333	48	5.0	48	80	2	262	26	18	29	25	1.98
31271932--31272086	18	8.6	18	72	8	109	37	16	12	34	1.86
31271933--31272098	36	4.6	36	71	4	129	37	15	12	34	1.85
31272282--31272455	45	3.9	45	94	0	303	40	20	18	19	1.91
31287884--31288101	48	4.5	48	83	2	249	26	18	29	24	1.98
31296772--31296809	19	2.0	20	89	5	60	23	7	15	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31307538--31307563	3	8.7	3	100	0	52	34	0	65	0	0.93
31311128--31311169	19	2.2	19	86	0	57	52	7	4	35	1.50
31314732--31314854	57	2.1	58	83	4	151	47	7	20	24	1.75
31314837--31314864	6	4.7	6	100	0	56	71	0	14	14	1.15
31315681--31315761	40	2.0	40	92	0	135	38	17	12	32	1.87
31316178--31316243	34	1.9	34	90	0	105	22	1	24	51	1.57
31318781--31318805	5	5.0	5	100	0	50	40	0	0	60	0.97
31329961--31330025	30	2.2	29	83	2	76	43	0	1	55	1.09
31329962--31329999	19	2.1	18	90	5	58	34	0	2	63	1.09
31331198--31331258	13	4.7	13	81	0	77	37	27	8	26	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313