genome.fa.s26.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  235  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72458242--72458306	22	2.7	25	75	18	66	23	12	43	21	1.86
72458266--72458316	22	2.3	22	93	0	84	19	11	47	21	1.81
72462471--72462527	21	2.7	21	94	0	105	29	8	19	42	1.81
72462817--72462841	8	3.1	8	100	0	50	28	0	24	48	1.52
72462817--72462849	15	2.1	16	88	5	50	30	0	24	45	1.53
72472469--72473184	357	2.0	358	95	0	1281	28	15	19	37	1.92
72478124--72478166	22	2.0	22	86	9	61	32	18	34	13	1.90
72482144--72482189	22	2.1	22	83	0	56	32	21	28	17	1.96
72493690--72493732	5	8.4	5	84	5	59	18	4	2	74	1.10
72507314--72507362	20	2.5	20	78	15	57	59	6	22	12	1.55
72524153--72524213	26	2.3	26	91	5	97	40	9	19	29	1.84
72528455--72528626	79	2.2	79	84	3	220	25	21	27	25	1.99
72528402--72528624	40	5.6	39	81	8	209	25	21	27	25	1.99
72528482--72528659	79	2.2	80	80	3	191	25	21	28	24	1.99
72533818--72533847	13	2.3	13	94	0	51	50	3	0	46	1.18
72544486--72544514	12	2.3	13	94	5	51	20	6	6	65	1.40
72549063--72549194	50	2.6	50	79	4	149	25	22	28	22	1.99
72549435--72549482	20	2.5	19	77	12	53	54	2	22	20	1.55
72556606--72557097	50	9.4	50	79	9	480	26	20	29	24	1.99
72556606--72557055	106	4.2	106	100	0	900	25	19	29	25	1.99
72556980--72557159	50	3.6	49	81	3	166	27	21	27	22	1.99
72558168--72558231	30	2.1	30	97	0	119	35	14	7	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72558460--72558652	50	3.7	50	79	5	190	24	26	22	26	2.00
72561153--72561199	22	2.1	22	84	4	58	6	8	4	80	1.00
72563149--72563196	18	2.7	17	77	6	51	20	4	6	68	1.28
72563245--72563325	3	27.0	3	100	0	162	33	33	0	33	1.58
72564627--72564845	45	4.9	45	86	1	287	36	19	20	23	1.95
72564627--72564884	135	1.9	135	80	3	304	37	18	20	22	1.94
72564811--72564930	45	2.6	47	81	2	127	44	19	20	15	1.87
72589366--72589430	32	2.1	32	97	2	123	47	12	9	30	1.72
72594992--72595087	11	9.0	11	72	13	76	1	11	13	73	1.14
72594991--72595036	20	2.3	20	92	0	74	2	17	10	69	1.27
72594971--72595024	28	1.9	29	92	7	94	3	14	9	72	1.24
72595033--72595087	20	2.7	20	89	10	85	0	7	14	78	0.96
72595021--72595084	12	5.8	12	75	20	61	0	9	15	75	1.05
72595630--72595723	31	3.0	31	96	3	179	42	15	9	31	1.80
72600277--72600376	22	4.7	21	76	14	80	4	14	9	73	1.23
72600255--72600303	15	3.3	15	78	21	66	0	12	12	75	1.05
72600332--72600393	20	3.2	19	78	10	72	4	9	9	75	1.17
72600933--72601028	31	3.1	32	95	3	169	46	12	9	31	1.73
72602170--72602232	18	3.4	19	71	20	53	44	0	3	52	1.17
72603810--72603834	10	2.5	10	100	0	50	28	0	8	64	1.22
72611772--72612452	226	3.0	226	99	0	1328	32	21	20	25	1.98
72621299--72621368	6	12.0	6	83	11	76	65	1	2	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72621320--72621387	6	10.9	7	86	10	71	64	1	7	26	1.28
72621307--72621377	37	1.9	37	88	2	108	64	2	5	26	1.29
72629988--72630648	339	1.9	341	84	5	874	35	15	19	29	1.93
72634413--72634450	8	4.6	8	81	18	51	34	0	2	63	1.09
72634417--72634469	25	2.2	25	83	10	65	37	0	3	58	1.16
72634413--72634472	25	2.4	25	83	10	61	36	0	3	60	1.14
72635344--72635374	3	10.3	3	100	0	62	67	0	32	0	0.91
72641094--72641218	51	2.4	52	85	6	175	26	15	30	28	1.96
72643697--72643772	30	2.5	30	89	0	116	30	25	6	38	1.81
72643685--72643946	120	2.2	119	82	4	314	22	25	14	37	1.92
72643757--72643978	30	7.4	30	77	7	150	18	25	16	39	1.91
72649838--72649964	6	20.3	6	69	16	53	70	2	21	5	1.19
72649845--72649964	27	4.3	26	74	21	77	70	2	22	5	1.19
72649872--72649921	14	3.6	14	80	0	55	76	0	20	4	0.95
72649851--72649964	29	4.2	25	75	23	90	69	2	22	5	1.21
72649871--72649970	21	4.8	20	74	8	83	68	2	23	7	1.25
72662868--72663197	40	8.3	40	86	7	431	23	19	27	29	1.98
72678978--72679141	30	5.5	30	74	7	145	23	23	12	40	1.89
72678967--72679141	60	2.9	60	88	0	251	23	22	14	40	1.90
72687136--72687164	8	3.6	8	100	0	58	75	0	0	24	0.80
72688809--72688851	19	2.2	20	84	12	63	32	18	0	48	1.48
72695290--72695497	27	7.7	27	82	8	226	41	19	15	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72695290--72695511	81	2.7	80	82	5	252	42	18	15	23	1.88
72695688--72695737	26	1.9	26	91	0	82	14	26	22	38	1.91
72702975--72703008	16	2.2	15	89	5	50	44	0	0	55	0.99
72706334--72706421	45	2.0	45	95	0	158	37	9	18	35	1.82
72709760--72709798	15	2.8	13	82	14	51	43	5	12	38	1.65
72713441--72713571	34	3.8	34	86	2	181	19	23	14	41	1.88
72713427--72713571	69	2.1	68	89	1	227	19	24	13	43	1.86
72713445--72713595	69	2.2	69	87	0	212	21	21	16	40	1.91
72716391--72716435	20	2.1	23	88	12	69	13	8	8	68	1.38
72720582--72720924	29	11.8	29	78	6	302	37	12	26	23	1.90
72720582--72720923	58	5.9	56	81	8	346	37	12	26	23	1.90
72720598--72720923	87	3.7	87	79	8	358	37	12	26	23	1.90
72720582--72720922	116	2.9	116	87	0	468	37	12	26	23	1.90
72721038--72721076	20	2.0	20	100	0	78	38	5	20	35	1.75
72722124--72722310	99	1.9	99	90	0	302	26	14	18	40	1.89
72724479--72724656	30	6.0	30	76	5	148	21	26	13	38	1.91
72724617--72724674	30	1.9	30	92	0	98	20	25	15	37	1.92
72726894--72727164	138	2.0	137	91	0	434	28	17	15	38	1.90
72738638--72738672	18	1.9	18	94	0	61	48	8	14	28	1.73
72740744--72740870	60	2.1	60	86	0	173	19	22	22	36	1.95
72743088--72743265	27	6.6	27	84	3	205	29	28	15	26	1.96
72743109--72743264	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72751279--72751511	27	8.6	27	84	3	270	28	28	15	26	1.96
72751279--72751511	55	4.3	54	84	3	279	28	28	15	26	1.96
72751279--72751510	82	2.8	82	84	3	279	28	28	15	26	1.96
72765494--72765756	40	6.6	40	87	3	309	26	28	20	23	1.99
72773440--72773704	40	6.7	40	85	5	286	26	27	21	24	1.99
72773407--72773704	80	3.7	80	79	9	263	25	27	21	25	1.99
72773636--72773713	40	1.9	41	82	10	97	26	28	20	24	1.99
72775988--72776145	63	2.5	63	84	0	199	24	25	17	32	1.96
72780268--72780399	27	4.9	27	91	3	214	46	21	16	15	1.84
72790809--72790880	33	2.1	34	89	2	110	40	6	12	40	1.70
72791964--72791988	12	2.1	12	100	0	50	44	16	8	32	1.76
72793975--72794149	27	6.5	27	86	3	228	41	18	20	19	1.90
72794405--72794470	33	2.0	33	82	5	80	25	24	24	25	2.00
72796619--72796644	12	2.2	12	100	0	52	15	15	0	69	1.20
72797600--72797852	27	9.4	27	77	8	223	43	18	15	22	1.87
72797600--72797852	54	4.7	53	78	7	260	43	18	15	22	1.87
72797600--72797824	81	2.8	81	79	7	260	44	19	14	21	1.86
72798213--72798357	28	5.2	29	80	7	165	24	22	22	31	1.99
72798213--72798357	56	2.6	56	84	0	191	24	22	22	31	1.99
72805376--72805432	16	3.6	16	71	19	57	29	15	7	47	1.72
72805368--72805428	16	3.8	16	75	12	54	29	16	9	44	1.80
72806870--72806911	20	2.1	20	90	0	66	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72823017--72823103	43	2.0	43	97	0	165	37	24	6	31	1.82
72833213--72833272	22	2.9	22	80	7	63	43	23	21	11	1.85
72841017--72841063	14	3.4	14	76	5	51	44	0	23	31	1.54
72841017--72841072	27	2.1	27	96	0	103	42	0	23	33	1.54
72842554--72842605	20	2.6	20	84	0	68	44	13	7	34	1.72
72849016--72849078	33	1.9	33	87	6	92	28	25	19	26	1.98
72854345--72854591	50	4.8	50	82	4	219	26	22	28	23	1.99
72857445--72857644	27	7.4	27	73	11	133	41	19	19	20	1.91
72857445--72857639	54	3.6	54	80	8	184	40	20	18	20	1.92
72857445--72857648	81	2.5	83	77	10	199	41	19	18	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313