genome.fa.s26.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  119  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38407125--38407187	11	6.5	10	76	22	55	55	0	1	42	1.09
38407202--38407227	11	2.4	11	100	0	52	53	0	7	38	1.30
38411726--38412073	174	2.0	175	86	2	495	41	22	14	22	1.89
38429548--38429702	45	3.5	46	83	4	174	32	27	15	24	1.95
38435497--38435625	49	2.7	46	82	10	138	38	20	25	15	1.92
38435500--38435625	22	5.3	24	81	10	136	38	20	25	15	1.92
38436266--38436302	16	2.3	16	95	0	65	59	0	0	40	0.97
38436265--38436296	8	4.0	8	91	0	55	59	0	0	40	0.97
38438286--38438349	25	2.6	25	71	14	60	35	6	6	51	1.52
38440353--38440389	19	1.9	19	88	0	56	37	0	0	62	0.96
38440354--38440396	19	2.2	19	83	4	50	34	0	4	60	1.17
38440653--38440678	13	2.0	13	100	0	52	30	15	23	30	1.95
38440684--38440708	6	4.2	6	100	0	50	16	0	0	84	0.63
38451679--38451719	22	1.9	22	90	5	66	17	7	4	70	1.28
38451793--38451858	35	1.9	34	90	3	105	36	0	0	63	0.95
38451815--38451889	21	3.5	21	81	5	71	40	1	1	57	1.16
38451848--38451888	22	1.9	21	85	5	55	43	2	2	51	1.28
38451957--38451981	9	2.8	9	100	0	50	40	0	0	60	0.97
38452075--38452129	22	2.7	20	82	5	65	60	0	5	34	1.20
38455687--38455728	16	2.8	15	89	7	59	61	0	2	35	1.09
38455816--38455944	21	6.0	22	75	16	92	55	2	0	41	1.12
38455843--38455937	7	13.6	7	68	12	52	55	3	0	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38455816--38455937	22	5.7	21	78	16	108	54	2	0	42	1.13
38455829--38455911	20	4.0	21	82	7	89	59	0	0	40	0.98
38455817--38455936	64	1.9	62	81	13	147	55	2	0	42	1.13
38456319--38456352	16	2.1	17	88	5	52	58	0	0	41	0.98
38462624--38462831	29	7.2	29	82	1	204	29	24	23	22	1.99
38462624--38462818	58	3.4	58	80	1	230	30	24	23	22	1.99
38462672--38462728	17	3.6	17	66	22	52	29	26	22	21	1.99
38462819--38462884	34	1.9	34	84	0	87	28	24	21	25	1.99
38469858--38469903	24	1.9	24	86	0	65	15	23	0	60	1.34
38481258--38481291	2	17.0	2	100	0	68	50	0	50	0	1.00
38486421--38486524	36	2.9	35	80	8	93	24	18	17	40	1.91
38489223--38489313	44	2.1	44	87	0	128	46	13	10	29	1.77
38493342--38493392	19	2.7	19	78	0	57	39	1	3	54	1.30
38497458--38497484	3	9.0	3	100	0	54	66	0	0	33	0.92
38500877--38501034	42	3.8	41	79	8	169	59	0	1	37	1.13
38500915--38500980	20	3.2	20	67	16	53	62	0	1	36	1.05
38500903--38501012	11	10.4	11	70	15	72	57	0	2	40	1.13
38504090--38504141	24	2.2	24	85	0	68	38	3	7	50	1.50
38508601--38508641	21	2.0	21	85	0	55	56	4	12	26	1.56
38516323--38516356	17	2.1	17	94	5	61	0	11	0	88	0.52
38522352--38522378	5	5.4	5	100	0	54	77	0	0	22	0.76
38538294--38538388	40	2.4	40	94	0	172	23	23	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38541923--38542078	75	2.1	75	96	0	285	36	27	16	19	1.93
38544901--38544992	40	2.3	40	88	5	143	65	1	2	31	1.12
38546206--38546242	16	2.4	16	90	4	58	59	5	2	32	1.34
38546438--38546485	8	5.6	8	81	13	60	58	14	0	27	1.37
38546424--38546499	27	2.8	27	100	0	152	55	14	0	30	1.40
38546369--38546701	101	3.1	108	85	11	469	57	12	0	30	1.38
38546424--38546528	54	1.9	54	83	7	133	57	14	0	28	1.38
38546532--38546704	19	8.6	19	72	18	111	56	12	0	30	1.40
38546709--38546781	27	2.7	27	91	0	119	15	28	26	30	1.96
38548434--38548481	20	2.4	20	75	0	51	66	2	0	31	1.03
38548435--38548513	31	2.5	31	78	11	81	62	1	0	36	1.04
38549826--38549859	9	3.8	9	88	0	50	47	14	8	29	1.75
38549918--38549980	30	2.1	30	82	11	76	20	49	0	30	1.49
38555265--38555301	18	2.1	18	100	0	74	21	8	16	54	1.68
38556370--38556404	13	2.8	12	83	8	52	28	0	2	68	1.04
38556404--38556444	18	2.2	20	86	8	59	65	4	0	29	1.13
38556650--38556680	10	2.9	11	90	9	55	74	0	9	16	1.07
38559802--38559840	16	2.3	18	86	8	55	10	23	12	53	1.69
38560221--38560266	24	1.9	24	90	0	74	15	10	54	19	1.70
38560244--38560303	18	3.3	18	95	0	111	11	11	56	20	1.65
38568573--38568626	20	2.7	20	85	5	74	55	0	1	42	1.10
38568497--38568639	45	3.1	45	71	17	114	51	1	9	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38568669--38568746	3	24.7	3	78	12	68	64	1	6	28	1.26
38568669--38568789	36	3.3	34	79	13	109	63	1	8	26	1.32
38570060--38570099	19	2.0	19	85	9	53	65	5	0	30	1.14
38570123--38570152	13	2.3	13	94	0	51	80	0	0	20	0.72
38570770--38570989	94	2.4	93	84	5	279	33	7	8	50	1.60
38570861--38570906	10	4.8	10	78	10	51	23	2	0	73	0.94
38570770--38571029	94	2.8	93	75	7	264	32	7	10	50	1.64
38572000--38572036	4	9.0	4	94	5	65	48	0	0	51	1.00
38586545--38586579	1	35.0	1	100	0	70	100	0	0	0	0.00
38587481--38588071	45	13.3	45	82	4	601	28	16	25	28	1.97
38587481--38588071	132	4.4	134	86	3	644	28	16	25	28	1.97
38587623--38588128	132	3.8	132	84	3	527	27	16	25	30	1.97
38592847--38592877	16	2.0	16	93	6	55	19	0	9	70	1.14
38592982--38593036	20	2.8	20	83	10	60	25	3	5	65	1.31
38593004--38593109	9	11.6	9	69	15	65	26	2	3	66	1.22
38592993--38593060	30	2.3	30	82	7	86	29	2	1	66	1.15
38593000--38593058	20	2.9	21	82	9	70	27	3	1	67	1.16
38594716--38594767	26	2.0	26	88	0	77	50	3	1	44	1.31
38594929--38594955	8	3.4	8	100	0	54	55	11	0	33	1.35
38606172--38606232	21	3.0	20	82	4	68	49	1	9	39	1.46
38606193--38606258	27	2.4	27	80	9	82	48	0	10	40	1.38
38608085--38608185	44	2.3	44	91	0	166	27	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38608209--38608692	45	10.8	45	80	1	531	26	25	18	30	1.98
38608209--38608692	90	5.4	90	89	2	670	26	25	18	30	1.98
38608209--38608692	135	3.6	135	83	1	630	26	25	18	30	1.98
38614236--38614334	47	2.1	46	87	9	137	31	23	22	23	1.99
38618663--38618868	103	2.0	103	97	0	385	27	4	18	50	1.66
38620946--38620998	16	3.2	16	82	12	54	54	1	0	43	1.11
38620920--38621022	44	2.3	45	80	5	120	55	5	1	36	1.35
38624176--38624205	15	2.0	15	100	0	60	53	13	13	20	1.72
38630204--38630252	17	3.0	17	82	11	50	48	2	10	38	1.48
38630219--38630294	27	3.1	23	75	18	73	48	1	10	39	1.46
38632938--38633006	16	4.2	16	96	3	129	24	0	37	37	1.56
38632938--38633006	33	2.1	32	97	2	129	24	0	37	37	1.56
38632987--38633077	45	2.0	45	85	2	121	27	6	28	37	1.82
38633242--38633278	19	2.0	19	85	15	51	54	0	0	45	1.00
38633320--38633505	59	3.1	58	69	19	157	51	3	2	42	1.34
38633222--38633511	120	2.4	120	89	3	456	49	4	2	43	1.35
38636551--38636585	18	1.9	18	100	0	70	60	0	28	11	1.32
38652319--38652351	13	2.8	12	86	13	50	72	0	0	27	0.85
38653492--38653534	19	2.3	18	92	4	68	11	6	6	74	1.21
38655217--38655284	20	3.6	17	72	20	55	54	0	5	39	1.25
38660114--38660278	40	4.1	40	83	0	195	41	2	18	37	1.63
38660173--38660260	13	6.6	13	75	12	63	42	0	18	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38660166--38660260	27	3.6	26	76	7	75	42	0	20	37	1.52
38660405--38660590	13	14.0	13	69	12	101	40	2	19	38	1.64
38660425--38660494	27	2.6	27	83	0	86	42	2	18	35	1.65
38660452--38660601	40	3.8	40	79	3	158	40	2	19	38	1.63
38660417--38660577	67	2.4	68	80	5	184	39	2	20	37	1.66
38661743--38661847	25	4.2	25	80	2	113	20	27	17	34	1.95
38661733--38661812	25	3.2	25	78	3	90	22	28	16	32	1.95
38661790--38661862	25	2.9	25	81	0	83	21	24	16	36	1.94
38661743--38661895	50	3.1	49	76	10	132	20	26	18	34	1.96
38663788--38663817	13	2.3	13	100	0	60	23	10	33	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313