genome.fa.s26.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  217  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66748008--66748657	217	3.0	217	94	0	1131	26	23	20	29	1.99
66748839--66749414	44	13.2	44	62	16	160	25	24	19	30	1.98
66748787--66749426	132	4.9	132	90	1	1038	25	24	20	30	1.98
66748787--66749426	259	2.5	260	92	1	1050	25	24	20	30	1.98
66750634--66750686	12	4.2	12	81	9	54	3	18	0	77	0.92
66750647--66750683	19	1.9	20	94	5	67	0	21	0	78	0.75
66773179--66773413	50	4.7	50	87	0	308	21	28	21	28	1.99
66773750--66773807	30	1.9	30	89	0	89	31	24	3	41	1.71
66780190--66780242	27	2.0	27	84	0	70	69	0	7	22	1.13
66780207--66780263	17	3.3	17	85	2	69	75	3	1	19	1.04
66780732--66780780	21	2.3	21	82	3	53	59	4	12	24	1.50
66782890--66782976	41	2.1	41	89	0	129	27	24	22	25	2.00
66785297--66785410	56	2.0	57	84	3	149	42	9	18	29	1.82
66788179--66788242	32	1.9	34	81	6	78	37	4	10	46	1.60
66788518--66788548	9	3.4	9	90	0	53	25	12	22	38	1.90
66793629--66793676	25	1.9	25	86	0	69	35	8	4	52	1.51
66796786--66796822	14	2.7	14	88	12	51	59	0	2	37	1.12
66796811--66796881	26	3.0	24	77	16	76	60	1	14	23	1.42
66806619--66806682	26	2.5	26	89	0	92	21	28	23	26	1.99
66816258--66816282	10	2.5	10	100	0	50	48	8	0	44	1.32
66816649--66816675	12	2.2	12	100	0	54	48	0	18	33	1.49
66820279--66820324	19	2.4	20	78	10	60	45	2	2	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66821330--66821378	23	2.1	23	85	7	64	48	12	0	38	1.41
66822114--66822154	16	2.6	16	80	3	57	34	0	0	65	0.93
66822141--66822188	19	2.6	18	78	21	55	33	0	2	64	1.05
66822114--66822194	16	4.7	18	74	7	55	33	0	1	65	1.01
66823010--66823040	16	2.0	15	93	6	53	54	0	6	38	1.26
66823825--66823895	29	2.4	30	85	2	90	35	9	29	25	1.88
66823888--66824077	30	6.4	29	72	8	107	40	14	24	20	1.90
66823855--66824137	60	4.7	60	69	10	186	38	14	25	22	1.91
66825148--66825177	12	2.5	12	94	0	51	23	40	30	6	1.80
66831570--66831644	29	2.5	28	80	6	87	42	13	26	17	1.86
66831622--66831726	30	3.5	30	78	0	75	37	12	20	29	1.90
66844899--66844991	49	1.9	48	93	2	159	25	24	7	41	1.81
66846753--66846803	25	2.0	27	84	7	70	47	13	0	39	1.43
66850087--66850171	6	13.7	6	68	24	52	76	1	15	7	1.06
66850086--66850171	20	4.6	18	84	11	95	76	1	15	6	1.05
66850574--66850625	19	2.7	20	76	5	54	36	0	1	61	1.07
66850661--66850787	61	2.1	61	88	2	184	38	15	14	31	1.87
66852356--66852499	62	2.3	62	74	11	143	43	11	4	40	1.61
66853324--66853468	56	2.6	55	82	9	175	46	13	15	25	1.81
66853824--66853858	17	1.9	19	88	11	56	25	2	5	65	1.28
66858846--66858890	24	1.9	24	90	4	74	35	0	2	62	1.08
66858987--66859014	9	3.1	9	100	0	56	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66858957--66859098	68	2.1	66	92	2	230	45	9	4	39	1.59
66859087--66859128	16	2.6	16	92	0	66	42	7	2	47	1.43
66859102--66859163	23	2.7	23	82	2	72	48	1	1	48	1.21
66862472--66862497	7	3.7	7	100	0	52	61	38	0	0	0.96
66866034--66866210	85	2.1	85	100	0	354	26	28	8	36	1.86
66870253--66870297	20	2.3	20	77	14	58	71	0	20	8	1.12
66874527--66874588	24	2.6	24	86	0	88	35	30	6	27	1.82
66876354--66876415	26	2.4	26	91	0	97	43	14	9	32	1.78
66876354--66876429	26	2.9	26	86	0	89	40	11	15	31	1.84
66882491--66882520	16	1.9	16	93	6	53	30	0	20	50	1.49
66885372--66885401	15	2.0	15	93	0	51	30	10	26	33	1.89
66893710--66893801	45	2.0	45	85	8	125	47	7	5	39	1.55
66906012--66906079	34	2.0	34	100	0	136	26	35	8	29	1.87
66926273--66926351	37	2.1	37	88	4	115	25	30	18	25	1.98
66926470--66926882	47	8.7	47	95	1	727	29	30	8	31	1.86
66926470--66926882	190	2.2	188	95	0	727	29	30	8	31	1.86
66929392--66929470	25	3.2	25	90	0	131	31	17	20	30	1.96
66932442--66932613	79	2.2	79	84	3	220	25	21	27	25	1.99
66932389--66932611	40	5.6	39	81	8	209	25	21	27	25	1.99
66932469--66932646	79	2.2	80	80	3	191	25	21	28	24	1.99
66944867--66945055	50	3.7	50	78	7	164	27	20	28	23	1.99
66945308--66945356	20	2.5	20	78	15	57	55	6	26	12	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66954108--66954183	29	2.6	28	81	2	89	22	36	22	18	1.95
66956081--66956122	21	1.9	23	90	9	70	30	11	14	42	1.81
66956567--66956661	47	2.0	47	95	0	172	37	10	15	35	1.82
66966055--66966122	20	3.2	22	77	10	70	13	32	22	32	1.92
66975751--66975890	70	2.0	70	97	0	262	27	15	16	40	1.88
66980342--66980388	20	2.3	20	85	10	60	29	19	12	38	1.89
66981085--66981109	13	1.9	13	100	0	50	40	0	12	48	1.40
66982646--66982705	23	2.6	22	73	17	59	38	5	1	55	1.32
66982712--66982755	21	2.1	21	82	0	52	29	6	0	63	1.20
66982772--66983258	162	3.1	162	64	24	440	28	5	9	57	1.51
66983017--66983064	21	2.2	22	85	7	62	20	4	2	72	1.11
66982730--66983351	309	2.0	309	100	0	1244	27	6	8	57	1.53
66985329--66985404	30	2.9	24	77	20	89	57	5	3	32	1.39
66985332--66985389	30	1.9	30	92	3	98	56	6	3	32	1.42
66986390--66986433	18	2.4	19	85	11	56	34	0	9	56	1.31
66986933--66986985	20	2.6	20	88	8	72	60	5	1	32	1.31
66996841--66996869	9	3.0	10	90	10	51	58	0	20	20	1.39
66997126--66997189	26	2.5	26	89	0	92	35	7	20	35	1.82
67001395--67001429	18	1.9	18	88	0	52	25	25	0	48	1.51
67015174--67015211	19	2.0	19	85	10	51	68	0	2	28	1.03
67015346--67015386	13	3.1	14	82	10	50	53	2	0	43	1.13
67016736--67016783	10	4.9	10	76	2	53	66	2	6	25	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67018760--67018810	5	9.6	5	80	16	50	78	0	1	19	0.85
67018759--67018810	21	2.4	21	83	3	59	76	1	1	19	0.97
67018781--67018812	6	5.7	6	96	3	50	81	0	0	18	0.70
67018760--67018809	26	1.9	26	88	8	75	78	0	2	20	0.86
67018760--67018812	12	4.9	11	78	17	58	77	0	1	20	0.87
67022253--67022288	15	2.5	14	86	8	54	44	8	0	47	1.33
67024533--67024600	9	7.6	9	94	0	109	23	10	26	39	1.87
67024525--67024600	27	2.8	27	93	0	125	25	10	25	39	1.87
67024630--67024694	9	7.2	9	92	0	103	21	10	26	41	1.86
67024630--67024694	27	2.4	27	97	0	121	21	10	26	41	1.86
67024536--67024741	94	2.2	94	97	0	385	32	9	18	39	1.84
67036128--67036160	13	2.5	13	95	0	57	42	0	0	57	0.98
67036126--67036183	26	2.2	25	79	8	62	50	0	1	48	1.11
67036437--67036473	19	1.9	18	89	10	56	45	0	0	54	1.00
67037644--67037676	16	2.1	16	94	0	57	39	6	27	27	1.80
67037945--67037986	20	2.1	20	100	0	84	50	0	0	50	1.00
67040055--67040450	196	2.0	196	100	0	792	34	22	11	30	1.90
67040421--67040453	16	2.1	16	94	0	57	45	0	15	39	1.46
67041143--67041203	20	3.3	20	69	21	69	60	0	31	8	1.26
67046936--67046969	16	2.1	16	89	10	52	29	2	0	67	1.05
67058676--67058713	20	2.0	20	85	15	53	57	0	7	34	1.28
67058676--67058713	19	1.9	19	85	15	51	57	0	7	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67059925--67060047	20	6.3	19	67	16	81	13	29	18	38	1.90
67069592--67069662	26	2.7	27	82	4	83	45	4	16	33	1.67
67073896--67074074	95	1.9	95	83	4	236	21	21	18	37	1.94
67077311--67077358	16	3.2	16	76	23	52	39	0	8	52	1.32
67082431--67082468	16	2.3	16	90	4	58	42	2	0	55	1.14
67084352--67084385	17	1.9	18	94	5	61	23	0	0	76	0.79
67084450--67084506	23	2.5	22	77	8	69	47	1	8	42	1.45
67086581--67086621	20	2.0	20	100	0	82	43	36	14	4	1.67
67087220--67087314	47	2.0	47	89	4	147	31	18	7	42	1.78
67091421--67091449	13	2.1	14	93	6	51	62	10	6	20	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313