genome.fa.s26.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  189  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58062143--58062207	27	2.4	27	97	0	121	20	4	13	61	1.50
58075896--58076019	63	2.0	64	88	1	187	45	5	18	30	1.73
58081025--58081067	12	3.6	12	75	12	52	32	0	44	23	1.54
58081024--58081072	24	2.0	24	92	4	80	32	0	38	28	1.57
58082554--58082630	15	5.3	14	74	20	61	55	6	2	35	1.39
58083809--58083843	16	2.2	16	89	0	52	77	2	2	17	1.02
58084155--58084217	27	2.3	27	80	2	72	41	23	14	20	1.89
58086055--58086107	27	2.0	27	84	0	70	69	3	9	16	1.30
58086059--58086103	23	2.0	22	82	4	54	66	4	8	20	1.36
58094220--58094313	6	15.7	6	69	21	56	76	6	1	15	1.04
58094226--58094299	27	2.7	26	82	12	87	75	6	1	16	1.08
58094221--58094313	17	5.2	17	70	21	57	76	6	1	16	1.05
58094254--58094346	22	3.9	23	69	23	68	74	7	1	17	1.11
58094288--58094312	11	2.3	11	100	0	50	76	8	0	16	1.02
58094253--58094322	18	4.1	17	77	16	58	75	7	1	15	1.08
58098986--58101726	624	4.4	624	89	3	4226	37	9	17	35	1.83
58102632--58102656	12	2.1	12	100	0	50	24	48	28	0	1.52
58115151--58115261	43	2.6	43	83	1	132	27	18	21	33	1.96
58115280--58115675	44	8.6	44	69	18	159	28	20	23	27	1.99
58115437--58115592	44	3.5	44	72	16	160	28	19	25	26	1.98
58115261--58115542	147	1.9	147	90	0	447	28	19	24	28	1.98
58115427--58115635	89	2.3	89	94	0	364	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58115427--58115670	89	2.7	89	89	2	312	28	21	22	27	1.99
58116783--58116991	44	4.7	44	75	12	194	28	21	23	26	1.99
58116838--58116984	45	3.3	45	74	12	158	28	20	25	25	1.99
58116785--58116991	89	2.3	89	94	0	360	28	21	23	26	1.99
58116785--58117028	89	2.7	89	88	2	294	28	22	22	26	1.99
58121697--58122075	113	3.4	113	100	0	758	28	16	12	42	1.85
58124651--58124696	20	2.2	21	88	11	69	26	6	19	47	1.73
58125144--58125200	10	5.7	10	76	12	55	54	8	0	36	1.32
58125144--58125200	20	2.8	20	80	19	66	54	8	0	36	1.32
58125630--58125678	22	2.2	23	85	10	66	6	10	6	77	1.11
58129557--58129589	4	8.2	4	100	0	66	48	27	0	24	1.51
58133274--58133314	21	2.0	21	90	0	64	26	29	17	26	1.97
58135543--58135577	17	2.1	17	89	5	54	74	0	25	0	0.82
58143199--58143241	9	4.8	9	88	0	50	60	6	0	32	1.23
58143207--58143243	3	12.3	3	88	0	56	62	5	0	32	1.18
58143430--58143476	15	3.1	15	79	11	51	68	0	29	2	1.02
58143441--58143494	19	2.8	19	80	5	56	68	1	29	0	1.00
58152173--58152391	96	2.3	93	80	5	219	26	16	30	26	1.97
58153516--58153555	21	2.0	21	90	5	64	10	37	30	22	1.87
58158054--58158183	50	2.6	49	88	1	188	28	28	18	24	1.98
58161219--58161464	49	5.0	49	79	3	267	28	26	18	26	1.98
58161221--58161464	100	2.5	98	84	5	312	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58163375--58163421	24	2.0	24	91	0	76	25	8	25	40	1.84
58165549--58165730	48	3.8	48	73	14	153	24	19	31	24	1.98
58170560--58170808	50	4.8	50	84	4	275	20	29	23	26	1.99
58170559--58170808	100	2.4	104	87	6	348	20	29	23	26	1.99
58170903--58170934	13	2.5	13	94	0	55	56	12	0	31	1.37
58171146--58171203	30	1.9	30	89	0	89	31	24	3	41	1.71
58172291--58172404	58	2.0	58	98	0	219	15	7	35	41	1.77
58182541--58182621	32	2.5	32	100	0	162	28	28	16	27	1.97
58184297--58184419	48	2.6	48	92	0	192	26	29	17	26	1.98
58184297--58184474	96	1.9	89	83	10	223	26	27	18	26	1.98
58187565--58187756	40	4.8	40	80	0	222	27	27	21	23	1.99
58187537--58187757	80	2.8	79	88	2	318	27	27	20	24	1.99
58201849--58201946	35	2.7	37	87	12	150	37	10	16	35	1.82
58201849--58201939	19	4.9	19	92	8	161	37	10	15	36	1.83
58207624--58209142	49	31.3	49	96	1	2724	34	8	27	29	1.87
58210188--58210219	10	3.2	10	90	0	55	46	9	34	9	1.68
58219074--58219325	131	1.9	131	91	0	414	36	15	20	26	1.93
58219569--58219696	37	3.4	37	65	29	97	35	17	24	23	1.95
58219523--58220221	77	9.0	77	96	1	1125	33	19	23	24	1.97
58220251--58220586	89	3.8	89	95	0	582	28	13	30	26	1.95
58220244--58220586	45	7.7	45	89	1	512	29	13	30	26	1.94
58220957--58221070	17	5.9	19	86	13	139	38	10	16	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58220974--58221079	22	5.2	22	90	10	149	39	9	16	33	1.81
58221269--58221306	20	1.9	20	88	0	58	10	13	5	71	1.30
58221360--58221392	16	2.0	17	88	5	50	30	0	0	69	0.88
58223457--58223525	7	9.9	7	98	0	120	24	14	14	46	1.82
58224042--58224201	80	2.0	80	100	0	320	43	18	7	30	1.78
58228105--58228137	15	2.2	15	89	10	50	12	18	0	69	1.18
58236930--58236987	30	1.9	30	82	6	73	37	5	27	29	1.78
58237182--58237214	16	2.0	17	94	5	59	36	0	12	51	1.39
58237418--58237530	47	2.4	47	98	0	217	21	16	30	30	1.95
58239910--58240204	100	2.9	99	80	2	302	26	22	17	34	1.96
58243353--58243391	20	2.0	20	85	14	55	5	28	7	58	1.47
58244091--58244186	30	3.2	30	84	0	138	28	46	5	19	1.71
58247961--58248031	35	2.1	34	94	2	124	43	5	35	14	1.68
58254647--58254812	73	2.2	73	89	2	242	28	18	21	32	1.96
58254792--58254836	13	3.4	13	84	6	63	15	11	4	68	1.34
58254793--58254830	14	2.8	13	88	7	58	15	13	5	65	1.43
58254733--58255009	101	2.8	100	88	3	380	23	17	19	39	1.92
58255022--58256109	71	13.8	75	69	16	396	29	16	20	33	1.95
58255022--58255364	150	2.3	149	85	4	442	31	16	20	32	1.94
58255020--58255357	75	4.5	73	81	8	387	31	15	19	32	1.93
58255643--58255992	155	2.4	146	86	6	449	28	16	22	33	1.96
58255643--58256021	77	5.1	74	86	5	493	27	17	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58256013--58256048	15	2.5	15	90	4	56	27	8	5	58	1.50
58255959--58256344	90	4.4	88	83	8	405	29	13	19	36	1.91
58256103--58256138	15	2.5	15	90	4	56	27	8	5	58	1.50
58259760--58259897	66	2.1	66	84	2	179	42	18	24	13	1.87
58260239--58260343	43	2.4	43	83	0	138	26	15	25	32	1.95
58266398--58266470	36	2.1	35	82	7	85	35	6	0	57	1.25
58272115--58272142	3	9.3	3	100	0	56	32	0	35	32	1.58
58276213--58276347	56	2.4	56	83	0	162	23	25	26	24	2.00
58277429--58277514	25	3.5	25	80	10	88	30	24	23	22	1.99
58279191--58279263	25	2.9	25	83	0	92	27	27	13	31	1.94
58280334--58280465	56	2.4	56	84	2	158	22	26	27	23	2.00
58282180--58282578	86	4.6	86	84	4	480	28	6	12	52	1.63
58282198--58282600	45	9.3	42	73	11	289	29	5	12	52	1.62
58282180--58282577	171	2.3	176	85	4	515	28	6	12	52	1.63
58282440--58282600	22	7.2	22	66	12	85	31	4	13	50	1.62
58282368--58282730	45	8.4	45	75	10	208	29	7	12	51	1.66
58282594--58282672	39	2.0	39	100	0	158	25	10	12	51	1.70
58283296--58283447	78	2.0	78	85	6	213	30	16	1	51	1.56
58284704--58284763	28	2.1	28	87	0	84	35	18	18	28	1.94
58296510--58296706	43	4.6	43	82	5	211	29	26	16	27	1.97
58298810--58298855	19	2.5	19	79	13	51	56	6	4	32	1.45
58298920--58298945	6	4.3	6	100	0	52	15	0	84	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58299090--58299140	16	2.9	18	77	14	52	43	1	0	54	1.11
58300518--58300558	13	3.2	13	83	13	57	41	0	2	56	1.13
58302889--58302926	15	2.5	15	91	0	67	60	0	39	0	0.97
58306080--58306124	22	2.0	22	83	8	56	26	8	20	44	1.80
58308497--58308537	21	2.0	20	90	4	64	21	31	36	9	1.86
58308817--58308849	13	2.5	13	95	0	57	30	42	27	0	1.56
58309684--58309830	46	3.2	45	77	10	122	25	31	16	26	1.96
58319401--58319435	18	1.9	18	88	0	52	31	17	20	31	1.95
58327245--58327276	5	6.6	5	92	7	57	81	0	0	18	0.70
58327246--58327276	9	3.3	9	95	4	53	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313