genome.fa.s26.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  161  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50671135--50671449	109	2.9	109	97	0	603	35	18	14	31	1.91
50673022--50673064	19	2.3	18	84	15	52	20	23	13	41	1.88
50674890--50674939	9	5.6	9	86	9	75	78	10	0	12	0.98
50674903--50674939	17	2.2	17	100	0	74	78	10	0	10	0.97
50675903--50675949	21	2.2	21	92	0	76	27	10	36	25	1.89
50677003--50677586	46	12.7	46	92	0	952	27	17	27	28	1.98
50677598--50678956	132	10.3	132	94	0	2196	32	18	22	26	1.97
50677831--50678174	44	7.8	43	67	12	180	31	17	23	27	1.97
50682526--50682568	19	2.3	18	84	15	52	20	23	13	41	1.88
50684397--50684452	9	6.3	9	93	4	96	80	8	0	10	0.91
50684398--50684452	17	3.2	17	94	2	92	80	9	0	10	0.92
50684397--50684452	26	2.1	26	93	3	78	80	8	0	10	0.91
50685411--50685457	21	2.2	21	88	0	67	29	10	34	25	1.90
50686512--50687221	46	15.4	46	92	0	1141	25	16	28	29	1.97
50687189--50687594	132	3.1	132	91	2	645	30	18	25	26	1.98
50697543--50697579	18	2.1	18	89	0	56	35	2	0	62	1.10
50705502--50705526	2	12.5	2	100	0	50	52	0	0	48	1.00
50709775--50709888	43	2.7	43	91	1	176	23	17	22	35	1.95
50710347--50710395	21	2.3	21	89	0	71	2	46	18	32	1.60
50710282--50710443	87	1.9	87	86	1	225	12	30	17	38	1.87
50711712--50712038	9	37.4	9	67	19	83	33	1	15	49	1.55
50711712--50711782	27	2.7	27	89	4	101	29	0	18	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50711769--50711956	31	6.6	29	67	23	98	32	1	13	52	1.50
50711885--50711963	12	7.4	11	70	17	51	34	0	12	53	1.39
50711873--50711956	32	2.7	31	83	8	116	34	0	13	52	1.40
50711974--50712037	16	3.9	16	78	8	56	32	1	18	46	1.59
50712047--50712166	62	1.9	62	91	0	195	50	8	5	35	1.56
50712109--50712146	16	2.4	16	91	4	60	52	5	0	42	1.24
50712156--50712188	17	1.9	17	100	0	66	51	6	6	36	1.51
50712028--50712235	62	3.5	57	76	13	152	50	8	5	36	1.55
50712834--50713877	521	2.0	522	96	0	1928	47	18	11	22	1.81
50716394--50716448	20	2.7	21	74	2	58	38	34	3	23	1.73
50716817--50717228	133	3.1	133	83	6	521	31	21	14	31	1.94
50721747--50721818	19	3.7	20	85	7	94	52	6	0	40	1.28
50722175--50722215	21	2.0	21	85	4	57	58	21	9	9	1.59
50722923--50722950	14	2.0	14	100	0	56	14	0	35	50	1.43
50723076--50723122	24	1.9	25	82	4	60	68	6	6	19	1.34
50728758--50728801	18	2.4	18	84	0	52	13	2	11	72	1.21
50731529--50731650	61	2.0	59	82	7	147	31	14	18	34	1.91
50735831--50735977	58	2.6	58	81	1	179	46	26	10	17	1.79
50740326--50740361	16	2.2	16	100	0	72	38	36	0	25	1.56
50758779--50758830	23	2.3	22	75	21	54	9	23	1	65	1.32
50761372--50761544	87	2.0	87	98	0	337	19	23	23	33	1.97
50764378--50764778	200	2.0	200	98	0	775	33	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50771187--50771251	20	3.3	19	73	16	51	38	16	21	23	1.93
50779281--50779399	63	1.9	63	96	0	220	35	12	11	40	1.80
50780596--50780967	62	6.0	62	100	0	744	24	17	11	46	1.81
50783572--50783723	76	2.0	76	100	0	304	27	15	15	40	1.88
50788273--50788313	21	2.0	21	90	0	64	29	21	29	19	1.98
50796884--50796918	16	2.1	17	89	5	54	51	0	8	40	1.33
50798275--50798310	18	2.0	18	94	0	63	41	8	11	38	1.71
50799294--50799321	14	2.0	14	100	0	56	85	0	0	14	0.59
50799316--50799394	30	2.7	29	78	4	77	32	22	6	37	1.80
50799628--50799669	22	1.9	22	95	0	75	66	2	16	14	1.35
50800038--50800093	10	5.8	10	81	6	62	75	0	23	1	0.90
50800038--50800093	19	2.9	20	84	7	71	75	0	23	1	0.90
50800070--50800098	13	2.3	13	94	5	51	89	0	10	0	0.48
50800057--50800096	9	4.3	9	81	6	53	82	0	17	0	0.67
50808408--50808471	11	5.9	11	76	9	51	81	7	9	1	0.94
50808407--50808488	22	4.0	20	75	19	71	81	6	10	1	0.91
50808405--50808489	23	3.7	23	82	6	86	82	5	10	1	0.89
50809373--50810220	78	10.8	79	85	5	813	28	17	20	33	1.95
50809380--50810202	154	5.3	155	86	5	873	28	17	20	33	1.95
50810229--50810258	15	1.9	16	93	6	53	0	16	0	83	0.65
50810592--50810621	8	3.6	8	91	8	51	86	3	0	10	0.67
50811343--50811418	10	7.9	10	76	14	70	76	0	22	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50811343--50811407	19	3.4	19	80	18	73	75	0	23	1	0.89
50811358--50811424	22	3.5	18	78	21	66	80	1	17	0	0.79
50811353--50811418	29	2.3	29	82	10	82	78	0	19	1	0.82
50811349--50811424	38	2.0	38	82	10	93	77	1	19	1	0.91
50811502--50811546	16	2.6	17	82	6	56	26	37	28	6	1.82
50811697--50811740	9	4.8	9	80	2	52	79	2	18	0	0.83
50812247--50812290	17	2.5	18	85	7	63	29	15	9	45	1.77
50812257--50812300	16	2.8	16	86	10	56	31	11	11	45	1.76
50812266--50812344	34	2.3	35	82	6	99	37	11	10	40	1.75
50812266--50812336	33	2.1	34	84	7	92	40	9	9	39	1.72
50814704--50814753	24	2.1	24	85	7	66	38	4	24	34	1.74
50818469--50818505	16	2.4	17	82	17	53	51	0	0	48	1.00
50818565--50818602	18	2.2	17	90	4	58	34	2	0	63	1.09
50818446--50818886	120	3.7	118	93	4	751	42	0	3	53	1.24
50818649--50818840	56	3.3	55	73	16	197	42	1	3	53	1.23
50820261--50820295	18	2.0	17	88	5	52	54	0	0	45	0.99
50824301--50824516	91	2.4	91	100	0	432	36	13	10	39	1.78
50831407--50831468	32	1.9	32	96	0	115	38	22	9	29	1.86
50831684--50831744	30	2.0	30	96	0	113	19	19	39	21	1.93
50845128--50845186	30	2.0	30	83	9	77	45	5	0	49	1.24
50848467--50848570	47	2.2	47	92	0	172	36	27	5	29	1.80
50850067--50850106	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50850053--50850118	34	1.9	35	90	3	107	31	9	13	45	1.75
50850196--50850247	18	2.7	20	74	17	56	36	3	0	59	1.16
50863179--50863215	9	4.1	9	92	0	65	45	13	10	29	1.77
50875340--50875414	38	2.0	38	92	5	125	17	18	18	45	1.86
50876991--50877045	16	3.4	16	82	0	65	29	21	7	41	1.80
50877189--50877337	26	6.2	23	72	15	86	61	5	5	27	1.39
50877211--50877459	51	4.7	50	74	14	155	61	4	4	28	1.37
50877286--50877334	22	2.3	22	86	10	66	63	4	4	28	1.31
50877185--50877574	25	15.2	24	71	18	188	60	3	6	29	1.40
50877313--50877461	29	5.4	28	76	11	146	61	3	5	30	1.35
50877308--50877461	28	5.6	28	79	11	144	61	3	5	29	1.33
50877511--50877582	29	2.4	29	77	11	83	66	0	6	26	1.16
50880552--50880585	11	3.1	11	86	0	50	67	2	0	29	1.05
50880561--50880603	17	2.6	17	85	3	52	60	2	0	37	1.10
50882924--50882959	6	5.7	6	93	6	54	80	0	13	5	0.88
50883593--50883639	17	2.7	17	80	9	51	61	10	0	27	1.29
50891600--50891642	17	2.5	17	84	0	59	39	32	16	11	1.84
50894160--50894228	33	2.1	32	81	7	77	23	5	18	52	1.67
50896161--50896237	23	3.2	23	71	8	64	33	23	27	15	1.95
50896223--50896291	26	2.7	26	80	6	70	36	21	24	17	1.95
50896679--50896718	20	2.0	20	85	9	55	37	0	2	60	1.11
50897181--50897220	21	1.9	21	89	0	62	40	25	0	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50900089--50900150	28	2.2	28	88	2	90	37	8	38	16	1.78
50900089--50900161	28	2.6	28	85	6	78	39	6	38	15	1.74
50902241--50902306	27	2.4	27	84	0	78	21	27	15	36	1.93
50905068--50905206	42	3.5	39	75	16	135	30	28	20	20	1.98
50905066--50905241	76	2.3	76	89	1	255	32	28	21	18	1.96
50907082--50907149	21	3.2	21	79	10	68	64	20	5	8	1.43
50907094--50907149	21	2.7	21	91	0	85	64	23	3	8	1.38
50907727--50907760	16	2.1	16	94	0	59	61	0	0	38	0.96
50917148--50917223	17	4.6	17	95	3	120	27	0	36	35	1.57
50917148--50917223	33	2.3	33	90	4	118	27	0	36	35	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313