Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  142  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45714197--45714240
19
2.2
20
80
4
54
13
9
2
75
1.14
45715020--45715070
3
17.0
3
87
0
66
37
0
1
60
1.08
45715617--45716029
99
3.9
107
86
8
578
35
19
16
28
1.94
45718515--45718571
27
2.2
25
81
6
69
63
0
5
31
1.17
45718950--45719016
12
5.6
12
80
0
71
56
1
8
32
1.39
45718950--45719016
3
22.3
3
76
0
62
56
1
8
32
1.39
45718960--45719015
21
2.7
21
85
0
76
57
1
7
33
1.37
45719677--45719711
12
3.0
12
87
4
54
71
2
8
17
1.23
45728487--45728988
94
5.3
94
81
5
471
31
18
18
31
1.95
45728487--45728948
187
2.5
190
82
4
537
30
18
19
31
1.95
45728794--45728926
50
2.9
44
68
20
117
33
18
16
31
1.93
45728707--45728950
44
5.3
44
68
19
140
31
17
18
32
1.94
45730427--45730460
14
2.2
16
90
10
54
14
5
0
79
0.91
45734264--45734410
75
2.0
75
97
0
276
41
12
19
25
1.87
45736152--45736193
21
1.9
23
85
9
61
42
0
0
57
0.99
45738654--45738682
14
2.0
15
93
6
51
41
0
6
51
1.28
45739084--45739130
16
3.0
16
73
14
53
31
6
8
53
1.57
45741728--45741775
25
2.0
24
84
8
62
52
0
6
41
1.27
45744964--45745023
29
2.1
29
84
6
77
40
1
3
55
1.27
45747707--45747814
57
1.9
57
94
0
189
25
13
25
35
1.93
45760299--45760350
14
3.8
13
77
7
59
61
3
0
34
1.14
45760296--45760359
27
2.7
23
78
19
76
60
3
0
35
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45767698--45767741
16
2.8
16
85
0
61
45
18
13
22
1.84
45769265--45769310
18
2.6
17
83
6
56
30
2
2
65
1.16
45771891--45771943
22
2.4
21
78
9
61
33
3
0
62
1.13
45771959--45772117
87
1.8
84
80
12
189
33
11
6
47
1.66
45772716--45772741
12
2.2
12
100
0
52
30
7
23
38
1.83
45776098--45776137
20
2.0
20
90
0
62
27
10
12
50
1.72
45776083--45776149
34
1.9
35
90
3
109
31
8
13
46
1.74
45776077--45776153
14
5.0
15
71
20
52
32
9
15
42
1.78
45776773--45776811
18
2.2
18
100
0
78
46
10
0
43
1.37
45777444--45777470
13
2.1
13
100
0
54
55
14
7
22
1.64
45778456--45778546
41
2.2
41
88
0
128
27
21
19
30
1.98
45781175--45781214
19
2.1
19
95
0
71
47
7
45
0
1.31
45788838--45788879
22
1.9
22
85
0
57
52
9
14
23
1.71
45790626--45790690
30
2.2
30
83
5
78
44
0
1
53
1.09
45798670--45798811
57
2.5
57
90
1
223
40
13
18
27
1.88
45798670--45798841
56
3.1
56
83
2
175
43
12
17
26
1.84
45805698--45805745
6
8.2
6
79
4
53
47
31
4
16
1.65
45808127--45808182
4
14.0
4
96
0
103
26
0
23
50
1.50
45811992--45812273
42
6.5
42
79
10
268
29
19
22
27
1.98
45812076--45812230
83
1.9
83
86
4
222
29
19
21
29
1.98
45814242--45814313
5
14.8
5
74
21
64
38
1
4
55
1.28
45814271--45814313
19
2.3
19
92
8
70
41
2
0
55
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45814316--45814350
17
2.1
17
94
0
61
80
2
11
5
1.00
45815559--45815693
39
3.5
36
72
13
92
22
20
28
28
1.99
45828233--45828275
22
2.0
22
95
0
77
9
20
27
41
1.83
45828434--45828782
43
8.2
43
75
9
146
25
26
20
26
1.99
45828565--45828808
43
5.7
42
77
13
207
29
29
16
25
1.97
45828518--45828782
128
2.1
127
82
5
320
27
27
17
27
1.98
45828565--45828808
85
2.9
82
75
15
228
29
29
16
25
1.97
45829165--45829257
21
4.4
21
82
2
107
4
41
16
37
1.68
45829208--45829277
21
3.3
21
80
4
61
4
38
18
38
1.71
45831621--45831648
14
2.0
14
100
0
56
28
28
7
35
1.84
45834371--45834622
9
30.2
9
69
16
116
38
2
15
43
1.60
45834376--45834495
16
7.9
16
69
19
96
35
1
17
45
1.58
45834390--45834529
25
5.7
25
78
6
133
36
2
16
45
1.60
45834551--45834583
16
2.1
16
100
0
66
30
0
24
45
1.53
45834447--45834588
25
5.6
25
70
17
80
38
2
16
42
1.61
45834447--45834588
34
4.2
33
71
16
96
38
2
16
42
1.61
45834575--45834697
56
2.2
56
95
0
219
42
2
10
44
1.52
45834609--45834654
22
2.1
22
91
0
74
43
0
10
45
1.39
45834746--45834791
22
2.1
22
95
0
83
41
0
10
47
1.38
45834584--45834735
56
3.0
48
74
18
132
42
1
11
44
1.52
45834712--45835230
56
9.2
56
98
0
975
41
1
10
45
1.50
45834802--45834846
22
2.0
22
95
0
81
42
0
11
46
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45834858--45834902
22
2.0
22
95
0
81
42
0
11
46
1.39
45834914--45834959
22
2.1
22
95
0
83
41
0
10
47
1.38
45834970--45835014
22
2.0
22
95
0
81
42
0
11
46
1.39
45835026--45835071
22
2.1
22
95
0
83
41
0
10
47
1.38
45835082--45835126
22
2.0
22
95
0
81
42
0
11
46
1.39
45835138--45835183
22
2.1
22
95
0
83
41
0
10
47
1.38
45838080--45838148
35
2.0
36
86
11
99
37
0
7
55
1.28
45838304--45838366
30
2.1
30
82
5
74
38
39
1
20
1.62
45838319--45838390
38
1.9
37
83
13
94
36
43
1
19
1.60
45839366--45839403
15
2.5
15
86
0
58
36
42
0
21
1.53
45839961--45840200
41
5.8
40
76
7
169
37
23
22
16
1.94
45839986--45840200
82
2.6
81
83
1
234
37
25
22
14
1.92
45840280--45840355
40
1.9
40
83
5
100
19
30
21
28
1.97
45841243--45841295
3
17.7
3
100
0
106
33
32
0
33
1.58
45844196--45844373
27
6.6
27
83
3
205
26
15
28
29
1.96
45844197--45844352
82
1.9
81
88
3
233
26
15
28
29
1.96
45844193--45844373
82
2.2
81
83
2
229
27
15
27
29
1.96
45846312--45846349
3
12.7
3
89
10
60
34
0
0
65
0.93
45846718--45846765
18
2.6
19
80
9
55
18
4
4
72
1.17
45847305--45847334
9
3.3
9
90
0
51
26
13
23
36
1.92
45847629--45847688
30
2.0
31
86
3
86
20
40
0
40
1.52
45847718--45848166
225
2.0
225
95
1
803
34
22
1
41
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45857432--45857508
37
2.1
37
92
0
127
33
16
15
33
1.91
45857968--45858017
25
2.0
25
88
0
73
4
34
4
58
1.36
45858205--45858230
11
2.4
11
100
0
52
23
0
15
61
1.33
45860516--45860554
20
2.0
20
94
0
69
48
0
2
48
1.15
45860637--45860746
14
6.9
15
68
23
57
44
15
9
30
1.77
45860653--45860726
20
4.0
20
73
20
79
48
13
9
28
1.73
45860641--45860741
34
2.9
34
95
1
175
46
13
8
30
1.74
45864333--45864438
30
3.5
30
90
5
160
36
3
0
59
1.16
45864403--45864461
11
5.4
11
73
20
52
37
1
0
61
1.07
45864373--45864461
41
2.1
44
89
6
139
37
3
0
59
1.14
45866899--45866974
31
2.5
31
77
0
80
32
13
13
40
1.83
45868297--45868359
25
2.4
25
77
20
65
47
0
1
50
1.10
45872007--45872032
2
13.0
2
100
0
52
0
50
0
50
1.00
45890657--45890703
18
2.7
17
87
6
67
36
0
0
63
0.94
45890662--45890742
18
4.2
18
73
16
72
30
1
0
67
0.98
45890657--45890765
41
2.5
43
85
10
150
33
0
0
65
0.99
45892474--45892530
20
2.8
20
80
15
55
68
3
1
26
1.15
45894307--45894345
20
2.0
20
85
10
53
17
0
5
76
0.96
45894629--45894675
17
2.7
18
81
15
62
34
10
8
46
1.69
45894742--45894784
21
2.0
22
86
4
61
39
6
9
44
1.64
45894765--45895230
17
26.1
18
72
15
317
32
12
10
44
1.77
45894780--45894823
21
2.1
21
87
4
63
38
15
9
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45894765--45895230
18
26.1
18
71
16
285
32
12
10
44
1.77
45894776--45895236
53
8.5
55
70
15
263
32
12
10
43
1.77
45894847--45894932
19
4.6
20
81
16
71
36
12
11
39
1.80
45894857--45895230
35
10.6
34
72
13
219
32
12
10
44
1.76
45894900--45895088
104
1.8
103
89
3
299
33
12
11
42
1.78
45894900--45895089
52
3.6
51
70
21
137
34
12
11
42
1.78
45895003--45895266
71
3.7
72
81
9
301
31
10
11
46
1.74
45903984--45904008
13
1.9
13
100
0
50
64
4
16
16
1.44
45921788--45921831
20
2.3
20
88
7
65
68
0
4
27
1.09
45924033--45924104
33
2.2
33
85
7
92
55
8
6
29
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313