Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  129  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41735177--41735209
17
2.0
17
88
5
50
75
18
0
6
1.00
41741474--41741501
13
2.2
13
100
0
56
64
0
0
35
0.94
41743355--41743382
13
2.2
13
100
0
56
64
0
0
35
0.94
41744608--41744650
22
1.9
23
85
4
61
48
2
2
46
1.27
41746098--41746122
3
8.3
3
100
0
50
32
32
0
36
1.58
41749843--41749883
10
4.0
10
87
12
57
60
2
0
36
1.10
41749853--41749899
20
2.3
20
89
7
69
68
4
0
27
1.08
41749845--41749904
10
5.8
10
79
14
50
68
3
0
28
1.05
41749865--41749902
10
3.6
11
82
10
53
73
5
0
21
1.02
41764734--41764880
73
2.0
74
97
1
278
48
12
12
26
1.75
41764807--41765214
118
3.6
118
81
12
541
42
14
16
25
1.87
41764644--41765287
191
3.2
193
70
13
589
43
13
15
26
1.85
41764836--41765159
105
3.0
101
84
11
371
39
15
18
26
1.90
41765144--41765296
73
2.1
73
98
0
297
47
13
12
26
1.78
41767307--41767445
46
3.0
46
93
2
235
34
9
25
30
1.88
41768629--41768722
28
3.4
28
87
0
134
31
23
10
34
1.89
41772021--41772062
16
2.4
17
84
11
50
54
0
4
40
1.21
41782508--41782580
23
3.2
23
92
0
119
24
8
23
43
1.81
41783396--41783463
30
2.3
29
85
10
84
29
8
14
47
1.75
41785622--41785745
38
3.0
38
72
20
131
16
12
20
50
1.78
41802741--41802853
4
27.8
4
72
16
63
66
0
10
23
1.22
41807097--41807157
20
3.1
19
73
22
54
27
0
4
67
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41814073--41814115
22
1.9
23
85
4
61
46
0
4
48
1.22
41820322--41820385
27
2.4
28
84
10
89
46
3
0
50
1.17
41821211--41821255
25
1.9
23
82
13
56
57
4
6
31
1.44
41825561--41825599
19
2.1
19
90
0
60
53
0
0
46
1.00
41825891--41825917
5
5.4
5
100
0
54
81
0
0
18
0.69
41829609--41829666
28
2.0
29
96
3
109
17
31
17
34
1.93
41831892--41831949
27
2.1
27
90
0
89
53
15
0
31
1.42
41831902--41831954
27
2.0
27
100
0
106
52
16
0
30
1.44
41841468--41841599
31
4.4
29
74
17
110
34
21
3
40
1.69
41841468--41841603
59
2.3
61
87
7
199
33
23
2
40
1.70
41841489--41841603
31
3.8
31
83
4
155
33
23
1
40
1.65
41842123--41842195
11
7.4
10
74
21
57
69
0
30
0
0.88
41842128--41842183
28
2.0
28
89
0
85
73
0
26
0
0.84
41842139--41842195
16
3.5
16
82
2
69
70
0
29
0
0.88
41842280--41842315
16
2.2
16
90
5
54
75
0
25
0
0.81
41846704--41846757
24
2.3
23
87
9
74
72
3
7
16
1.22
41846891--41847040
3
50.0
3
70
6
81
60
3
8
28
1.41
41846876--41846923
16
2.8
18
84
6
64
64
4
6
25
1.35
41846908--41846968
25
2.5
25
84
7
72
65
0
6
27
1.17
41848961--41849010
20
2.5
20
80
3
66
56
6
14
24
1.60
41851192--41851262
27
2.5
28
79
6
81
64
1
1
32
1.11
41852158--41852204
17
2.5
20
87
12
66
38
4
4
53
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41852158--41852206
20
2.6
18
84
12
62
36
4
4
55
1.38
41859436--41859484
26
1.9
25
83
4
62
44
2
6
46
1.39
41863648--41863692
19
2.3
20
81
11
58
64
4
0
31
1.13
41863799--41863837
19
2.1
19
90
9
62
69
0
7
23
1.14
41866584--41866791
109
1.9
107
89
1
317
32
19
18
30
1.95
41867316--41867712
197
2.0
198
98
0
760
55
3
8
33
1.46
41870250--41870431
98
1.9
94
86
6
258
39
4
10
45
1.60
41872178--41872230
13
4.1
13
73
9
54
35
20
7
35
1.81
41872180--41872230
26
2.0
26
88
0
75
35
19
7
37
1.81
41873691--41873724
9
3.9
9
88
3
52
44
2
5
47
1.42
41876601--41876678
19
4.1
19
76
3
84
39
20
6
33
1.78
41877307--41877407
10
10.4
10
70
10
66
57
0
5
35
1.30
41877795--41877835
19
2.1
18
86
13
55
41
4
0
53
1.22
41877828--41877892
30
2.2
30
83
10
80
36
3
1
58
1.23
41884369--41884428
30
2.0
31
86
3
86
40
0
40
20
1.52
41884647--41884683
9
4.1
9
89
0
56
32
10
10
45
1.74
41885093--41885135
14
2.9
15
86
6
52
60
4
0
34
1.17
41885374--41885446
20
3.5
20
71
15
60
32
0
2
64
1.08
41885419--41885469
13
4.1
13
77
10
52
29
1
7
60
1.36
41885419--41885467
24
2.0
24
84
0
62
28
2
6
63
1.30
41893247--41893297
3
17.3
3
75
4
50
35
1
1
60
1.19
41893422--41893448
3
9.0
3
100
0
54
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41907814--41907850
16
2.4
15
86
8
56
75
8
16
0
1.02
41913612--41913654
10
4.4
9
85
11
50
72
2
6
18
1.19
41913626--41913663
20
2.0
20
89
5
60
71
0
7
21
1.11
41915519--41915878
120
3.0
120
95
0
630
42
18
13
25
1.87
41934779--41934812
6
5.5
6
86
6
50
52
11
2
32
1.53
41935294--41935328
11
2.9
12
91
8
54
48
0
51
0
1.00
41940540--41940762
111
2.0
111
92
0
374
42
10
12
34
1.78
41940980--41941007
11
2.5
11
100
0
56
46
10
0
42
1.38
41942122--41942154
17
2.0
17
94
5
59
51
0
6
42
1.26
41944255--41944314
28
2.2
28
80
17
72
45
3
1
50
1.28
41944297--41944386
37
2.5
36
78
8
94
48
1
5
44
1.33
41948684--41948710
13
2.1
13
100
0
54
55
7
0
37
1.28
41948814--41949143
97
3.4
97
98
0
624
40
13
7
37
1.74
41949181--41949225
23
2.0
23
82
8
56
44
6
2
46
1.42
41952518--41952569
15
3.6
15
80
12
56
44
0
1
53
1.11
41952393--41952805
120
3.4
120
95
1
722
41
2
5
50
1.39
41952638--41952689
15
3.6
15
80
12
56
44
0
1
53
1.11
41952767--41952808
15
2.7
16
82
14
52
45
0
2
52
1.13
41952758--41952799
15
2.9
15
82
10
52
47
0
0
52
1.00
41952742--41953064
157
2.0
159
93
3
551
47
4
3
43
1.40
41952911--41952945
18
2.0
17
88
5
52
45
0
0
54
0.99
41954071--41954144
24
2.7
28
80
20
102
45
4
1
48
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41968622--41968671
19
2.6
19
87
9
66
74
10
10
6
1.23
41971511--41971550
15
2.7
15
100
0
80
12
32
25
30
1.92
41977486--41977548
30
2.1
30
96
0
117
57
15
3
23
1.53
41978977--41979018
17
2.7
15
85
10
57
50
0
0
50
1.00
41978978--41979011
17
2.1
16
94
5
59
52
0
0
47
1.00
41979051--41979094
22
2.0
23
82
13
56
61
2
9
27
1.38
41989507--41989552
17
2.9
16
81
12
51
60
6
2
30
1.34
41994694--41994721
3
9.3
3
100
0
56
35
0
0
64
0.94
42002350--42002395
22
2.1
22
87
0
65
21
23
17
36
1.94
42003443--42003469
13
2.1
13
100
0
54
55
0
0
44
0.99
42004186--42004223
17
2.2
17
90
0
58
31
7
10
50
1.66
42016701--42016805
53
2.0
53
96
0
192
28
7
31
32
1.85
42026652--42026693
22
1.9
22
90
0
66
59
2
2
35
1.23
42026651--42026717
32
2.1
33
86
8
93
59
1
2
35
1.22
42026651--42026698
10
4.6
10
82
10
60
60
2
2
35
1.20
42026801--42026905
52
2.0
53
96
1
194
57
1
8
32
1.40
42027525--42027549
10
2.5
10
100
0
50
84
0
0
16
0.63
42041479--42041525
21
2.2
22
92
3
78
21
19
38
21
1.94
42043872--42043933
30
2.0
32
87
9
94
41
0
3
54
1.16
42055619--42056597
512
1.9
512
99
0
1949
32
12
22
31
1.92
42057342--42057377
17
2.0
18
89
10
56
41
5
0
52
1.24
42064016--42064042
13
2.1
13
100
0
54
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42076790--42076876
44
2.0
44
93
0
147
29
9
10
50
1.67
42077707--42077737
6
5.2
6
100
0
62
35
0
0
64
0.94
42084112--42084253
43
3.2
42
70
19
117
46
2
2
48
1.28
42084073--42084287
90
2.3
89
84
7
279
46
3
4
46
1.38
42084073--42084278
91
2.3
91
88
1
297
46
3
3
46
1.38
42084310--42084352
15
2.9
14
80
12
50
48
0
0
51
1.00
42084332--42084650
59
5.2
62
68
20
224
42
1
5
50
1.38
42084294--42084711
120
3.5
120
94
1
703
43
1
5
50
1.35
42084419--42084470
15
3.6
15
80
12
56
44
0
1
53
1.11
42084539--42084590
15
3.6
15
80
12
56
44
0
1
53
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313