genome.fa.s26.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  92  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30642681--30642728	15	3.1	15	84	6	60	66	6	2	25	1.26
30642809--30642848	17	2.4	17	87	8	55	67	0	2	30	1.04
30643462--30643567	55	1.9	54	86	1	149	17	27	33	20	1.96
30644655--30644902	44	5.6	43	72	13	175	27	27	17	28	1.98
30644544--30644996	177	2.6	176	83	5	574	27	26	17	28	1.98
30657243--30657292	22	2.3	21	80	6	55	60	2	14	24	1.45
30663051--30663087	16	2.2	17	85	9	58	24	0	37	37	1.56
30663057--30663088	16	2.0	16	100	0	64	31	0	37	31	1.58
30666257--30666314	24	2.4	24	82	0	71	25	3	8	62	1.40
30666497--30666560	16	4.2	16	76	13	64	39	1	3	56	1.25
30666501--30666577	39	2.0	39	84	5	102	37	1	2	58	1.20
30666504--30666576	25	3.0	23	76	18	69	38	1	2	57	1.22
30666752--30666819	3	22.0	3	79	11	75	30	5	1	61	1.28
30674092--30674156	32	2.0	32	96	0	121	30	24	32	12	1.92
30679255--30679869	44	14.2	44	86	3	761	30	15	31	22	1.95
30679255--30679869	260	2.4	253	85	4	804	30	15	31	22	1.95
30679255--30679859	128	4.7	129	83	4	690	29	16	31	22	1.95
30693497--30693547	26	2.0	26	88	0	75	66	1	3	27	1.20
30693519--30693593	19	4.3	18	76	10	75	60	1	2	36	1.20
30695461--30695515	16	3.5	15	80	9	65	58	1	21	18	1.49
30699374--30699502	49	2.7	47	80	4	150	29	34	13	22	1.93
30728030--30728083	22	2.5	21	87	3	81	51	12	16	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30731726--30731776	26	2.0	26	100	0	102	37	19	11	31	1.88
30732448--30732498	25	2.0	25	88	0	75	43	1	31	23	1.65
30733665--30733700	8	4.4	8	89	3	54	52	0	0	47	1.00
30742367--30742419	22	2.3	22	74	6	52	37	3	1	56	1.28
30742704--30742792	44	2.0	44	95	0	160	30	8	15	44	1.77
30747757--30747819	28	2.2	30	76	21	73	26	15	4	52	1.63
30748138--30748175	18	2.1	18	95	0	67	26	13	10	50	1.73
30749828--30749857	2	15.0	2	100	0	60	50	0	0	50	1.00
30752064--30752098	16	2.2	16	89	0	52	28	0	2	68	1.04
30758286--30758318	13	2.4	14	95	5	59	72	6	15	6	1.24
30768412--30769051	76	8.6	74	90	2	838	29	18	20	31	1.96
30769016--30769241	87	2.6	86	78	7	224	29	15	20	34	1.94
30769865--30769918	18	3.3	18	66	28	57	24	50	7	18	1.72
30769855--30769941	30	2.9	30	96	0	156	25	50	6	17	1.70
30770832--30770881	19	2.4	22	80	12	61	56	6	0	38	1.24
30770832--30770887	19	2.7	20	72	10	51	57	5	0	37	1.22
30774821--30775025	94	2.2	91	85	2	257	38	13	5	42	1.68
30787400--30787462	31	2.0	31	100	0	126	12	6	22	58	1.56
30789953--30790202	82	3.1	81	62	24	177	45	4	4	46	1.40
30789956--30790265	157	2.0	157	93	0	530	47	5	3	43	1.42
30790395--30790462	16	4.2	16	90	0	109	38	35	0	26	1.57
30799592--30799621	15	2.0	15	93	0	51	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30802953--30803177	40	5.7	40	84	4	222	24	21	27	26	1.99
30803006--30803175	40	4.3	40	90	0	225	24	21	27	27	1.99
30803028--30803210	79	2.3	79	81	1	215	25	20	27	26	1.99
30814551--30814977	44	9.5	44	71	12	233	35	17	18	28	1.94
30814385--30814964	182	3.2	182	87	2	812	36	17	18	28	1.93
30814676--30814963	85	3.3	85	73	12	258	35	19	16	29	1.93
30814710--30815061	137	2.6	138	80	6	367	34	19	17	28	1.94
30816672--30816906	3	76.7	3	65	18	74	30	6	5	58	1.45
30821850--30821891	14	3.0	14	77	22	52	23	4	0	71	1.05
30824319--30824348	14	2.1	15	93	6	53	20	10	13	56	1.65
30824531--30824639	54	2.0	54	94	0	191	34	10	22	33	1.87
30831761--30831827	33	2.0	33	100	0	134	17	8	28	44	1.79
30832149--30832225	9	8.6	9	82	0	91	46	20	6	25	1.75
30832148--30832225	18	4.3	18	85	0	111	47	20	6	25	1.74
30834264--30834295	12	2.6	12	95	5	55	34	6	12	46	1.67
30834276--30834338	31	2.0	31	96	0	117	33	12	6	47	1.67
30835408--30835476	28	2.5	28	80	7	77	26	1	7	65	1.27
30835724--30835765	19	2.2	19	83	8	50	73	0	2	23	0.94
30835729--30835795	16	4.1	16	76	14	57	70	0	5	23	1.09
30835891--30835968	31	2.6	30	84	12	97	16	12	2	67	1.33
30835881--30835968	30	3.0	30	76	17	103	15	11	4	68	1.36
30836596--30836639	2	22.0	2	100	0	88	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30845526--30845573	23	2.1	23	100	0	96	29	12	8	50	1.69
30853160--30853219	31	1.9	31	93	0	102	36	8	8	46	1.64
30859033--30859069	7	5.6	7	93	3	51	24	2	16	56	1.53
30859003--30859102	33	3.2	33	64	25	90	24	12	18	46	1.82
30864783--30864821	16	2.5	16	87	4	53	51	5	0	43	1.24
30865928--30866009	10	8.4	10	71	22	59	35	2	2	59	1.24
30865939--30865972	17	1.9	17	88	5	50	35	2	0	61	1.11
30867457--30867532	5	15.0	5	75	19	61	55	3	0	40	1.18
30867455--30867496	21	2.0	21	90	9	68	54	0	0	45	0.99
30867457--30867536	29	2.9	27	79	20	85	53	3	0	42	1.18
30873151--30873260	54	2.0	56	91	3	179	20	25	16	37	1.93
30874822--30874971	51	2.9	51	85	2	194	32	10	22	34	1.87
30879927--30879956	14	2.1	14	93	0	51	30	3	0	66	1.07
30882062--30882107	16	2.8	16	86	6	56	28	4	28	39	1.76
30882512--30882550	20	2.0	20	94	0	69	51	12	7	28	1.67
30882521--30882565	20	2.2	20	84	7	56	48	13	8	28	1.72
30886046--30886317	143	1.9	143	82	3	336	43	8	13	34	1.74
30886543--30886589	17	2.9	15	80	20	58	29	0	0	70	0.88
30886896--30886924	14	2.1	14	100	0	58	48	0	0	51	1.00
30894729--30894765	20	1.9	18	89	10	56	43	0	21	35	1.53
30898023--30898243	46	4.9	44	76	8	171	25	19	30	24	1.98
30904740--30904795	16	3.5	16	81	13	55	30	1	1	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30917507--30917913	44	9.3	44	88	0	593	29	15	26	28	1.96
30917811--30918021	114	1.9	114	93	0	368	28	15	27	27	1.96
30917918--30918143	44	5.1	44	90	0	326	31	15	25	27	1.95
30917761--30918065	158	1.9	157	87	0	439	30	15	26	27	1.96
30919616--30919674	21	2.8	21	78	19	61	44	0	1	54	1.10
30919686--30919781	16	5.4	18	72	24	71	31	2	2	64	1.16
30919685--30919773	25	3.5	25	73	19	76	32	2	2	62	1.19
30919710--30919797	41	2.1	42	81	6	99	31	4	1	62	1.23
30925954--30926216	40	6.6	40	88	3	325	24	20	27	26	1.99
30925993--30926251	80	3.3	80	85	3	256	25	20	27	25	1.99
30930269--30930499	40	5.8	40	89	2	322	23	29	23	24	1.99
30939032--30939209	27	6.6	26	82	6	178	26	16	28	28	1.97
30939033--30939188	82	1.9	81	86	3	224	26	16	28	28	1.97
30939029--30939209	82	2.2	81	82	2	220	27	16	27	28	1.97
30939114--30939220	27	3.9	27	83	1	79	26	15	28	29	1.96
30947067--30947244	27	6.6	26	80	6	169	26	15	28	29	1.96
30947068--30947223	82	1.9	81	85	3	215	26	16	28	28	1.97
30947064--30947244	82	2.2	81	81	2	211	27	16	27	29	1.97
30947149--30947255	27	3.9	27	83	1	79	26	15	28	29	1.96
30955107--30955284	27	6.6	26	80	6	160	26	15	28	28	1.96
30955108--30955258	82	1.9	81	85	4	214	27	16	27	28	1.97
30955104--30955284	82	2.2	81	80	2	202	27	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30961546--30961706	43	3.7	43	73	12	134	27	24	20	27	1.99
30969225--30969476	46	5.5	43	77	11	193	24	30	19	25	1.98
30969264--30969478	92	2.3	90	82	6	236	23	31	19	25	1.98
30972340--30972453	27	4.2	27	84	10	153	17	24	23	34	1.96
30972337--30972445	54	2.0	54	96	1	202	17	25	22	33	1.96
30972340--30972471	27	4.9	26	85	7	131	18	25	21	34	1.96
30977626--30977670	22	2.0	22	95	0	81	17	15	22	44	1.86
30983147--30983186	17	2.2	20	86	13	59	0	7	10	82	0.84
30986028--30986052	5	5.0	5	100	0	50	40	0	0	60	0.97
30991305--30991387	31	2.7	31	83	3	105	49	2	6	42	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313