genome.fa.s26.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  149  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47436286--47436534	87	2.9	88	90	1	385	24	26	23	26	2.00
47436566--47436893	44	7.5	44	83	0	413	23	25	21	29	1.99
47436566--47436893	132	2.5	132	86	0	458	23	25	21	29	1.99
47438193--47438280	46	1.9	46	88	0	131	18	15	19	46	1.84
47442767--47442792	13	2.0	13	100	0	52	23	7	7	61	1.49
47442884--47442952	24	2.8	25	78	10	81	49	10	5	34	1.61
47446023--47446400	125	3.0	125	86	3	571	30	22	17	29	1.97
47454343--47454377	2	17.5	2	100	0	70	51	0	48	0	1.00
47470694--47470718	13	1.9	13	100	0	50	40	0	8	52	1.31
47479126--47479187	27	2.3	27	88	0	88	22	22	32	22	1.98
47482585--47482648	33	2.0	32	84	9	85	26	17	43	12	1.84
47484300--47484326	5	5.4	5	100	0	54	0	0	59	40	0.98
47484446--47484515	17	3.9	17	79	18	72	50	0	0	50	1.00
47484459--47484514	16	3.2	17	79	16	62	53	0	0	46	1.00
47484464--47484502	20	2.0	20	90	10	62	48	0	0	51	1.00
47484448--47484517	18	3.9	17	75	14	61	50	0	0	50	1.00
47484637--47484663	5	5.4	5	100	0	54	40	59	0	0	0.98
47487231--47487266	13	2.7	13	86	4	54	33	2	0	63	1.08
47491384--47491431	23	2.1	23	88	0	69	39	2	4	54	1.32
47495680--47495723	21	2.2	21	88	8	65	45	22	25	6	1.77
47495692--47495732	21	2.0	21	85	0	55	46	24	19	9	1.80
47495717--47495835	21	5.7	21	64	11	73	44	17	20	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495717--47495834	42	2.8	42	85	2	166	44	17	20	17	1.87
47503027--47503065	18	2.0	20	85	9	55	10	17	2	69	1.28
47503962--47504011	27	2.0	25	85	14	68	42	12	4	42	1.60
47506092--47506250	28	5.7	28	77	5	124	23	14	6	55	1.61
47507507--47507556	24	2.2	21	82	10	55	40	10	10	40	1.72
47507514--47507556	21	1.9	23	86	13	63	39	6	9	44	1.64
47517814--47517870	23	2.3	26	85	11	75	45	5	7	42	1.53
47529653--47529703	13	3.9	13	94	0	84	23	11	25	39	1.89
47529930--47529976	20	2.5	19	75	6	51	55	2	2	40	1.24
47532823--47532864	18	2.4	17	84	15	50	57	7	0	35	1.26
47532859--47532888	15	2.0	15	93	0	51	40	10	0	50	1.36
47533450--47533522	10	7.3	10	83	13	62	10	5	0	83	0.80
47533452--47533545	22	4.0	22	78	13	82	14	4	0	80	0.85
47533490--47533535	4	12.2	4	86	13	71	23	0	0	76	0.79
47533484--47533545	26	2.4	25	92	7	99	22	0	0	77	0.77
47533484--47533545	18	3.5	17	82	10	72	22	0	0	77	0.77
47534587--47534655	17	4.1	17	70	22	65	73	0	4	21	1.00
47534587--47534654	4	16.5	4	74	19	52	73	0	4	22	1.01
47537948--47538058	55	2.0	55	94	0	195	33	22	17	27	1.96
47541145--47541180	15	2.5	14	86	8	54	44	8	0	47	1.33
47543351--47543634	136	2.1	136	87	1	408	26	23	18	32	1.97
47543333--47543615	69	4.1	68	69	8	171	25	24	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47544811--47544874	25	2.5	27	82	7	80	43	0	0	56	0.99
47544820--47544869	14	3.6	14	79	15	59	42	0	0	58	0.98
47544815--47544869	27	2.0	29	89	7	87	43	0	0	56	0.99
47554202--47554312	54	2.1	54	94	0	195	18	17	27	37	1.92
47561452--47561551	41	2.4	42	81	6	116	31	24	18	27	1.97
47563340--47563513	41	4.2	41	87	0	240	27	24	21	25	1.99
47563301--47563513	82	2.6	82	78	3	241	26	25	21	26	2.00
47566518--47566546	13	2.3	13	94	5	51	44	20	3	31	1.68
47574420--47574548	67	2.0	65	89	6	197	44	10	17	27	1.82
47574147--47574875	389	1.9	388	97	0	1395	48	7	12	30	1.70
47577457--47577608	46	3.4	46	90	2	238	27	23	14	34	1.93
47578895--47578967	37	2.0	37	94	2	130	24	23	16	35	1.95
47578931--47579245	46	6.6	46	83	8	369	30	21	13	34	1.92
47579037--47579231	52	3.9	52	82	8	258	29	22	13	34	1.92
47578931--47579245	98	3.3	98	90	2	471	30	21	13	34	1.92
47578930--47579245	144	2.2	138	84	9	443	30	22	13	34	1.92
47581561--47581826	37	7.0	37	90	7	392	25	20	16	37	1.93
47581744--47582156	46	8.6	46	84	9	520	28	21	14	35	1.93
47581744--47582156	98	4.3	98	94	1	667	28	21	14	35	1.93
47585278--47585423	49	3.0	49	90	1	229	32	29	13	23	1.93
47586675--47587561	37	24.0	37	99	0	1740	24	19	16	40	1.91
47587525--47587793	46	5.6	46	90	6	358	27	22	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47587568--47587784	52	4.2	52	87	8	320	27	23	14	35	1.93
47587525--47587793	98	2.8	94	83	12	348	27	22	14	34	1.94
47594224--47594249	6	4.3	6	100	0	52	15	30	0	53	1.42
47599541--47599605	32	2.0	33	93	3	114	29	26	16	27	1.97
47600198--47600262	20	3.4	19	69	14	62	33	4	16	44	1.69
47600173--47600285	37	3.1	37	92	1	192	31	4	15	47	1.66
47600182--47600288	17	5.9	17	65	16	54	30	2	15	50	1.59
47600292--47600358	9	7.0	9	74	12	62	23	5	28	41	1.78
47600288--47600358	29	2.4	29	92	0	124	23	7	26	42	1.80
47600288--47600358	20	3.7	19	73	15	74	23	7	26	42	1.80
47601401--47601512	40	2.8	41	81	9	115	50	8	5	35	1.57
47603596--47603763	84	2.0	84	97	0	318	34	1	8	55	1.39
47607315--47607371	2	28.5	2	96	0	105	49	1	49	0	1.11
47612709--47612782	22	3.5	22	71	23	77	60	17	4	17	1.51
47612719--47612789	19	3.6	19	72	10	70	57	18	5	18	1.59
47612738--47612767	11	2.7	11	89	0	51	60	13	10	16	1.59
47613183--47613208	9	2.9	9	100	0	52	11	34	19	34	1.88
47615665--47615929	13	21.2	13	67	18	134	52	5	5	36	1.47
47615625--47615788	79	2.1	79	94	0	283	51	4	5	37	1.46
47615633--47615929	27	11.8	26	71	16	171	52	5	5	37	1.45
47615665--47615870	40	5.3	40	72	15	157	52	5	5	35	1.48
47615812--47615919	55	2.0	55	94	0	189	52	5	4	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47615828--47615891	20	3.0	21	86	6	76	53	7	4	34	1.51
47615879--47615920	22	2.0	21	90	4	66	54	4	2	38	1.34
47617238--47617305	29	2.3	30	84	5	93	55	26	4	13	1.56
47617780--47617930	75	2.0	75	98	0	293	18	28	33	19	1.96
47618193--47618458	37	7.0	37	90	7	392	25	20	16	37	1.93
47618376--47618788	46	8.6	46	84	9	520	28	21	14	35	1.93
47618376--47618788	98	4.3	98	94	1	667	28	21	14	35	1.93
47621922--47622181	58	4.9	50	88	7	290	31	30	13	23	1.94
47622006--47622182	58	3.0	58	99	0	345	31	31	13	23	1.93
47627787--47627837	19	2.6	19	87	3	66	31	0	5	62	1.19
47627780--47627908	9	13.9	9	69	16	68	31	3	3	62	1.26
47627801--47627848	19	2.5	19	86	0	60	31	2	4	62	1.26
47628252--47628307	27	2.1	27	96	0	103	42	1	3	51	1.29
47628256--47628322	27	2.5	27	85	4	73	41	2	2	52	1.32
47638844--47638887	22	2.0	22	100	0	88	9	50	4	36	1.55
47640239--47640288	13	3.9	13	82	15	68	16	18	4	62	1.48
47640234--47640287	12	4.3	12	82	13	56	18	18	3	59	1.52
47642791--47642921	67	2.0	66	95	1	235	26	32	19	20	1.97
47646994--47647037	23	1.9	23	90	0	70	61	4	2	31	1.28
47646998--47647040	11	3.8	11	80	17	52	65	2	2	30	1.18
47656001--47656156	37	4.2	37	66	9	95	34	7	7	50	1.58
47656075--47656131	19	3.0	19	80	7	62	35	3	8	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47659917--47659951	17	2.1	16	89	5	52	17	17	20	45	1.85
47662320--47662359	19	2.1	19	86	9	55	12	10	7	70	1.35
47663290--47663331	13	3.2	13	86	10	50	66	0	19	14	1.25
47663287--47663331	21	2.2	20	88	11	65	64	0	20	15	1.29
47664591--47664931	89	3.8	90	93	1	564	30	17	23	29	1.97
47664605--47664931	45	7.4	45	78	3	351	31	16	23	28	1.96
47668794--47668883	21	4.3	21	81	5	110	4	42	18	34	1.71
47668794--47668883	42	2.1	42	87	4	128	4	42	18	34	1.71
47670419--47670485	9	7.4	9	79	12	57	35	2	11	49	1.55
47670415--47670485	27	2.6	27	80	8	81	36	2	11	49	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313