genome.fa.s26.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  164  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51571159--51571202	16	2.8	16	78	0	52	27	6	9	56	1.55
51582019--51582043	13	1.9	13	100	0	50	8	24	8	60	1.52
51586314--51586345	15	2.1	15	94	0	55	18	9	6	65	1.42
51597470--51597618	9	16.3	9	70	17	76	29	2	2	65	1.17
51597473--51597567	38	2.6	36	77	11	95	27	2	3	67	1.17
51597855--51597942	10	9.0	9	70	22	54	35	1	2	61	1.16
51597857--51597895	18	2.2	17	90	4	60	35	0	2	61	1.10
51597830--51597951	11	11.6	11	70	20	75	36	3	1	59	1.24
51597874--51597924	23	2.3	22	93	3	84	33	1	1	62	1.17
51597885--51597977	40	2.2	42	86	5	127	33	2	2	62	1.19
51597908--51597941	17	2.0	17	88	0	50	35	0	0	64	0.94
51597830--51597950	51	2.3	52	84	4	174	36	3	1	58	1.24
51602419--51602462	9	4.9	9	81	10	54	25	31	0	43	1.55
51605311--51605337	14	1.9	14	100	0	54	37	0	25	37	1.57
51605559--51605584	10	2.6	10	100	0	52	57	0	0	42	0.98
51605669--51605710	13	2.9	14	80	13	50	52	0	2	45	1.13
51608451--51608661	110	1.9	109	84	2	280	30	26	20	22	1.98
51608675--51608788	40	2.8	41	81	2	131	40	26	20	13	1.89
51614185--51614224	17	2.3	18	95	4	73	45	5	5	45	1.47
51624295--51624492	26	7.4	27	72	12	106	30	17	24	27	1.97
51624215--51624492	54	5.2	54	72	11	185	31	17	23	26	1.97
51624218--51624493	27	10.3	27	72	14	137	31	18	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51625801--51625838	6	5.9	7	90	9	55	57	0	26	15	1.38
51629930--51629993	28	2.3	28	86	2	85	32	21	23	21	1.98
51630098--51630152	26	2.1	26	93	0	92	36	21	21	20	1.95
51630326--51630493	27	6.3	27	84	5	189	18	16	20	45	1.86
51630326--51630493	54	3.1	54	88	2	241	18	16	20	45	1.86
51637657--51637711	26	2.1	26	86	0	74	34	23	20	21	1.97
51637889--51638008	27	4.4	27	89	6	156	18	19	17	45	1.86
51643672--51643696	12	2.1	12	100	0	50	48	8	8	36	1.62
51648865--51648953	28	3.2	27	86	0	106	41	16	16	24	1.89
51648879--51648989	28	3.9	29	83	9	99	39	15	16	28	1.89
51649125--51649209	37	2.3	37	83	0	107	30	18	21	29	1.97
51651584--51651630	13	3.8	13	83	11	71	21	17	0	61	1.34
51651580--51651629	24	2.1	24	100	0	100	20	20	0	60	1.37
51653850--51653942	27	3.4	27	80	0	96	25	25	18	30	1.98
51655661--51655747	38	2.3	38	93	0	147	28	14	21	34	1.94
51657986--51658045	18	3.2	18	72	19	50	26	5	8	60	1.47
51657992--51658035	21	2.0	22	91	4	72	25	6	4	63	1.38
51658014--51658052	18	2.2	17	86	4	51	30	5	5	58	1.41
51672180--51672258	39	2.0	39	95	0	140	35	21	8	34	1.85
51673589--51673624	10	3.6	10	92	0	63	52	11	0	36	1.37
51673587--51673633	20	2.4	20	78	3	51	57	10	0	31	1.33
51678354--51678395	18	2.3	18	87	0	57	16	9	47	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51688435--51688484	17	2.8	17	78	6	55	6	14	0	80	0.90
51689860--51689924	29	2.2	29	84	13	89	38	13	10	36	1.80
51694081--51694117	18	2.1	18	89	0	56	56	32	0	10	1.34
51697103--51697297	108	1.8	108	83	4	259	29	14	19	36	1.91
51699797--51699834	20	2.1	18	85	14	51	31	0	13	55	1.38
51700505--51700563	21	2.8	21	100	0	118	15	23	18	42	1.88
51703422--51703451	9	3.3	9	90	0	51	70	0	30	0	0.88
51710798--51710928	43	3.0	42	75	18	124	30	29	17	22	1.97
51719531--51719578	26	1.9	25	87	8	71	43	10	12	33	1.77
51719795--51719848	12	4.3	12	78	17	56	59	3	18	18	1.52
51719792--51719843	13	4.1	13	78	14	63	61	5	17	15	1.52
51720931--51720971	20	2.0	20	100	0	82	65	4	14	14	1.42
51721213--51721261	23	2.1	23	100	0	98	32	4	53	10	1.54
51722740--51722901	37	4.0	40	69	24	115	17	5	7	69	1.31
51726430--51727506	179	6.0	179	90	1	1631	32	21	18	27	1.97
51726793--51727408	44	13.7	45	71	7	290	32	21	18	27	1.97
51728956--51728984	12	2.3	13	94	5	51	17	0	6	75	1.01
51736913--51736964	26	2.0	26	92	0	86	23	26	19	30	1.98
51737936--51737987	25	2.0	26	85	3	70	38	11	11	38	1.78
51739018--51739053	14	2.5	15	91	8	58	58	8	5	27	1.50
51740797--51741254	51	9.7	48	72	15	280	28	19	17	34	1.95
51740848--51741402	44	12.1	44	73	8	390	29	18	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51740791--51741500	95	7.5	95	81	6	551	29	18	17	34	1.94
51741143--51741400	89	2.9	89	84	4	324	30	19	15	34	1.93
51741058--51741356	134	2.2	135	80	7	327	31	20	15	33	1.93
51741393--51741418	12	2.2	12	100	0	52	34	7	15	42	1.75
51741349--51741457	57	1.9	56	83	5	139	31	13	17	37	1.89
51741937--51741987	22	2.3	22	86	3	66	47	15	9	27	1.77
51741950--51741994	22	2.0	22	95	0	81	44	11	8	35	1.71
51750450--51750522	32	2.3	31	85	2	92	45	4	4	46	1.41
51751297--51751429	53	2.7	47	79	12	133	50	4	2	42	1.35
51751321--51751419	47	2.1	47	81	7	112	51	4	1	43	1.27
51751344--51751393	21	2.3	21	89	3	73	52	6	2	40	1.38
51751370--51751421	26	2.0	26	100	0	104	50	3	0	46	1.20
51756191--51756373	40	4.6	40	94	0	312	27	21	19	30	1.98
51765583--51766044	231	2.0	231	100	0	924	26	35	12	25	1.91
51766001--51766812	48	16.9	48	77	2	606	25	49	4	19	1.67
51765998--51766812	96	8.5	96	84	0	775	25	49	4	19	1.67
51766011--51766828	144	5.7	144	83	0	828	26	49	4	19	1.66
51766112--51766291	21	7.7	21	67	20	72	25	53	4	16	1.62
51766358--51766435	21	3.4	21	71	19	66	24	55	3	16	1.58
51766376--51766462	27	3.5	26	71	18	85	27	52	3	16	1.59
51766394--51766467	21	3.1	24	69	21	73	28	54	2	14	1.55
51766703--51766777	24	3.1	24	66	27	68	22	49	5	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51766712--51766798	27	3.5	26	67	23	69	26	48	4	20	1.69
51766704--51766950	125	2.0	125	90	0	395	25	49	3	20	1.65
51766855--51767684	96	8.6	96	77	5	620	25	50	4	19	1.65
51766966--51767040	21	3.3	21	68	20	60	24	54	4	17	1.59
51766829--51767321	144	3.4	144	97	0	907	25	49	4	20	1.66
51767110--51767184	21	3.3	21	68	20	60	25	54	4	16	1.59
51767339--51767369	16	2.0	16	93	6	55	9	77	6	6	1.12
51766829--51767669	144	5.8	144	88	1	781	25	50	4	19	1.65
51767605--51767684	27	3.2	26	67	20	71	26	50	3	20	1.65
51767697--51768389	48	14.4	48	81	0	704	25	50	4	19	1.66
51767710--51767786	21	3.4	21	70	19	64	25	54	5	14	1.60
51767557--51767807	123	2.0	123	87	1	360	26	51	4	17	1.65
51767701--51767819	24	5.0	24	65	23	63	26	52	5	15	1.65
51767605--51767903	75	4.1	74	71	17	253	25	50	4	19	1.66
51767461--51767906	219	2.0	219	88	1	653	25	50	4	18	1.66
51773112--51773159	15	2.8	17	78	18	55	58	0	0	41	0.98
51773090--51773182	31	2.9	33	71	12	86	55	4	2	37	1.31
51773307--51773390	24	3.7	23	77	14	84	47	2	9	40	1.49
51773375--51773454	22	3.7	21	75	12	72	52	2	7	37	1.43
51778954--51779004	26	2.0	24	85	7	66	35	3	3	56	1.36
51780009--51780035	12	2.2	12	100	0	54	48	22	11	18	1.79
51790261--51790315	19	3.0	19	81	5	51	45	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51791749--51791803	19	3.0	19	81	5	51	45	3	0	50	1.19
51792917--51792978	32	1.9	32	83	0	79	40	4	11	43	1.62
51800610--51800638	14	2.0	15	93	6	51	0	3	6	89	0.57
51802478--51802702	113	2.0	114	86	9	316	44	12	9	33	1.74
51802504--51802826	113	2.9	111	76	15	303	42	10	10	36	1.74
51802616--51802810	108	1.8	107	81	10	245	42	10	10	36	1.74
51803850--51803909	28	2.1	29	79	14	72	56	1	0	41	1.09
51803852--51803925	27	2.8	26	77	18	73	56	1	0	41	1.07
51806422--51806494	38	1.9	38	82	0	92	17	27	8	46	1.76
51807167--51807207	18	2.3	18	86	0	55	65	14	9	9	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313