Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  96  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31973988--31974047
19
3.2
19
77
11
70
68
0
0
31
0.90
31973972--31974047
37
2.1
36
85
7
102
68
0
0
31
0.90
31974002--31974068
16
4.4
16
74
22
63
74
1
1
22
0.98
31973973--31974036
9
7.6
9
78
19
59
67
0
0
32
0.91
31973975--31974046
7
9.7
7
84
13
58
68
0
0
31
0.90
31974016--31974068
26
2.1
24
82
6
61
75
1
1
20
0.99
31988888--31988942
10
5.5
10
80
6
67
65
1
3
29
1.20
31988899--31988964
20
3.3
20
74
4
62
63
3
4
28
1.29
31988888--31988941
14
3.7
14
80
14
56
64
1
3
29
1.21
31992735--31992775
6
6.8
6
100
0
82
17
0
14
68
1.22
31992850--31992903
15
3.5
15
78
14
56
59
0
1
38
1.08
31992840--31992890
20
2.7
19
80
14
61
58
0
0
41
0.98
31998768--31998826
31
1.9
31
86
6
84
55
8
25
10
1.61
31999980--32000031
22
2.4
22
80
0
68
38
7
1
51
1.42
31999980--32000038
22
2.7
22
70
15
59
40
6
1
50
1.39
32008549--32008595
19
2.3
20
78
10
60
40
4
19
36
1.71
32009189--32009246
26
2.2
26
96
0
107
32
5
25
36
1.78
32010042--32010107
33
2.0
33
82
8
82
48
0
4
46
1.22
32010571--32010607
19
1.9
19
88
0
56
43
2
16
37
1.62
32011265--32011293
14
2.0
15
93
6
51
68
6
20
3
1.27
32011312--32011345
16
2.2
16
89
5
52
64
0
35
0
0.94
32012230--32012270
15
3.0
14
80
13
50
58
0
12
29
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32012620--32012727
23
4.9
23
83
7
118
18
20
24
37
1.94
32012639--32012726
21
4.1
21
82
7
106
17
22
23
36
1.94
32012639--32012726
44
2.1
41
85
6
113
17
22
23
36
1.94
32015608--32015644
15
2.5
15
100
0
74
35
13
13
37
1.84
32018091--32018191
53
2.0
50
86
9
141
56
1
5
35
1.35
32018493--32018588
20
4.8
20
70
3
68
35
6
0
58
1.23
32018677--32018727
10
5.3
10
76
9
52
41
1
1
54
1.22
32018676--32018720
18
2.4
18
85
3
54
37
2
2
57
1.23
32019595--32019648
20
2.6
20
85
5
63
62
0
1
35
1.06
32024539--32024625
21
4.0
23
80
10
92
37
25
21
14
1.92
32024612--32024658
23
2.0
23
88
8
69
40
19
19
21
1.92
32025896--32025932
5
7.2
5
96
3
65
56
0
0
43
0.99
32026736--32026836
42
2.4
42
98
0
193
42
9
10
36
1.73
32031199--32031239
20
2.0
20
95
0
73
26
31
9
31
1.89
32033538--32033601
23
2.9
21
80
17
51
68
3
0
28
1.04
32033659--32033729
23
3.2
23
70
6
56
63
1
5
29
1.26
32047743--32047830
42
2.1
42
89
0
131
15
18
22
43
1.88
32058542--32058579
17
2.2
18
85
4
51
55
2
10
31
1.48
32061451--32061485
18
1.9
18
88
0
52
17
0
22
60
1.37
32071227--32071274
21
2.3
21
100
0
96
35
0
18
45
1.50
32073283--32073314
16
2.0
16
100
0
64
56
6
12
25
1.59
32073387--32073438
23
2.2
24
89
6
88
44
19
3
32
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32075596--32075638
6
6.8
6
84
10
59
79
4
0
16
0.90
32075596--32075633
20
1.9
20
94
0
67
76
5
0
18
0.97
32075596--32075641
20
2.4
19
85
3
65
78
4
0
17
0.91
32075656--32075722
9
7.4
9
89
0
89
25
5
23
44
1.76
32075656--32075722
18
3.7
18
85
0
98
25
5
23
44
1.76
32077544--32077590
17
2.6
19
80
16
64
57
12
10
19
1.64
32080703--32080739
18
2.1
18
90
5
58
62
2
0
35
1.10
32080702--32080749
17
2.5
19
80
16
55
56
2
4
37
1.30
32084503--32084572
35
2.0
35
94
0
122
31
20
21
27
1.98
32084538--32084740
88
2.3
88
86
1
273
27
23
23
25
2.00
32084796--32085202
88
4.6
87
78
4
372
21
23
20
34
1.97
32085054--32085185
44
3.0
44
64
16
119
24
23
19
32
1.98
32085296--32085487
64
3.0
64
93
0
312
35
11
18
33
1.87
32086351--32086428
39
2.0
39
94
0
138
20
35
16
26
1.94
32088777--32088938
47
3.5
47
94
0
272
43
15
23
17
1.87
32090284--32090335
18
2.7
19
76
11
52
0
19
7
73
1.07
32097020--32097107
39
2.3
38
84
7
115
53
3
2
40
1.30
32097223--32097259
20
1.9
19
89
10
58
48
2
0
48
1.15
32098043--32098096
26
2.1
26
83
10
67
25
3
3
66
1.25
32100450--32100488
19
2.1
19
85
9
53
28
5
7
58
1.47
32110530--32110611
41
2.0
41
95
0
146
25
12
25
36
1.91
32111386--32111526
45
3.2
44
72
9
126
27
9
18
43
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32111598--32111677
41
2.0
39
97
2
142
11
5
60
22
1.50
32115587--32115658
22
3.4
22
64
21
62
41
6
8
43
1.62
32115585--32115669
42
2.0
42
100
0
170
37
7
9
45
1.64
32117118--32117156
20
2.0
20
94
0
69
51
17
12
17
1.76
32117463--32117503
11
3.7
11
80
0
55
17
14
9
58
1.62
32117532--32117562
12
2.7
11
90
9
53
29
0
0
70
0.87
32117725--32117757
11
2.9
12
86
13
52
66
0
0
33
0.92
32128390--32128435
19
2.4
19
85
0
56
58
0
4
36
1.18
32135909--32135980
16
4.3
16
75
16
65
43
9
12
34
1.76
32135884--32135929
20
2.3
18
82
17
56
32
6
8
52
1.58
32136033--32136070
18
2.2
18
86
9
53
39
7
5
47
1.55
32135976--32136077
36
2.7
37
73
8
91
42
10
8
38
1.71
32136116--32136184
24
3.0
23
83
12
88
40
7
7
44
1.60
32136078--32136319
96
2.5
96
92
2
387
46
8
9
35
1.67
32136213--32136279
22
3.0
21
89
6
89
40
7
7
44
1.61
32135918--32136451
17
29.5
18
68
17
170
45
9
11
33
1.73
32136259--32136428
35
4.9
34
74
11
114
45
10
14
29
1.77
32143290--32143482
100
1.9
100
98
0
377
43
20
4
32
1.71
32145737--32145799
31
2.0
31
96
0
117
34
15
12
36
1.86
32146550--32146605
23
2.6
22
81
10
62
51
0
0
48
1.00
32146869--32146910
13
3.2
13
93
3
66
64
4
0
30
1.14
32154157--32154190
3
11.3
3
87
0
50
0
26
0
73
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32154157--32154193
18
2.1
18
94
0
65
0
24
0
75
0.80
32154755--32154814
29
2.0
30
93
3
104
41
15
10
33
1.80
32155332--32155359
3
9.3
3
100
0
56
32
0
0
67
0.91
32155594--32155627
12
2.7
13
86
9
52
29
2
0
67
1.05
32159875--32159971
20
4.8
20
80
8
90
9
34
24
31
1.87
32159896--32159971
40
1.9
40
86
5
109
7
34
25
32
1.85
32160667--32160825
47
3.4
47
84
3
230
24
15
23
37
1.93
32167122--32167180
21
2.8
21
92
0
73
22
30
22
25
1.99
32176676--32176728
5
10.0
5
80
11
61
41
0
1
56
1.10
32176673--32176729
8
6.6
9
74
22
59
43
0
1
54
1.10
32176674--32176729
12
4.5
12
81
16
69
42
0
1
55
1.10
32178267--32178400
39
3.4
39
73
10
103
25
20
26
28
1.99
32178524--32178564
19
2.2
19
87
12
59
46
0
24
29
1.53
32178512--32178551
13
3.2
13
80
19
50
50
0
25
25
1.50
32179654--32179747
46
2.0
47
95
4
172
19
28
21
30
1.97
32182443--32182483
19
2.2
19
86
8
57
0
2
21
75
0.92
32182453--32182491
20
2.0
20
85
10
53
0
2
25
71
0.98
32187041--32187071
6
5.2
6
92
0
53
0
12
16
70
1.16
32191372--32191439
35
2.0
33
86
13
95
27
2
19
50
1.62
32192748--32192814
34
1.9
35
90
3
109
43
11
10
34
1.76
32193399--32193443
15
3.2
15
69
18
51
26
0
15
57
1.38
32193399--32193454
27
2.1
27
89
0
85
26
1
16
55
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32193509--32193597
46
1.9
46
90
0
142
30
6
14
48
1.70
32193675--32193735
31
2.0
31
100
0
122
24
9
19
45
1.80
32203611--32203638
5
5.6
5
100
0
56
42
0
0
57
0.99
32203641--32203701
24
2.4
24
83
10
68
75
4
11
8
1.18
32216513--32216603
43
2.1
44
85
2
121
37
10
2
49
1.50
32226880--32226991
37
3.1
35
73
12
116
41
3
0
54
1.24
32226872--32226979
38
2.9
37
75
13
121
41
4
0
52
1.28
32226862--32226995
24
5.4
25
67
23
70
41
3
1
53
1.28
32230757--32230807
18
2.8
18
93
0
84
27
25
15
31
1.96
32234853--32234883
11
2.8
11
95
0
53
19
48
3
29
1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313